Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06550 Nelumbo nucifera HOM05D003674 ORTHO05D004226 9.3e-98 360.1 175 100.0
TAR624G0345 Trochodendron aralioides HOM05D003674 ORTHO05D004226 4.1e-77 291.6 172 80.8
Dinv23635 Davidia involucrata HOM05D003674 ORTHO05D004226 1.0e-75 287.0 172 80.2
TAR624G0173 Trochodendron aralioides HOM05D003674 ORTHO05D004226 6.5e-75 284.3 172 80.2
TWI75G1008 Tripterygium wilfordii HOM05D003674 ORTHO05D004226 1.9e-74 282.7 172 78.5
Eucgr.K01031 Eucalyptus grandis HOM05D003674 ORTHO05D004226 5.5e-74 281.2 172 76.7
Haze_13165 Corylus avellana HOM05D003674 ORTHO05D004226 1.2e-73 280.0 172 78.5
Sc12g0003090 Simmondsia chinensis HOM05D003674 ORTHO05D004226 2.1e-73 279.3 172 77.9
DCAR_021245 Daucus carota HOM05D003674 ORTHO05D004226 2.7e-73 278.9 172 75.0
CSS0035927 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 3.6e-73 278.5 172 76.7
Eucgr.K01029 Eucalyptus grandis HOM05D003674 ORTHO05D004226 4.7e-73 278.1 172 76.2
Cpa.g.sc848.1 Carica papaya HOM05D003674 ORTHO05D004226 6.1e-73 277.7 172 76.2
FAN05G0320 Fragaria x ananassa HOM05D000230 ORTHO05D000176 6.1e-73 277.7 172 76.2
CSS0005418 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 7.9e-73 277.3 172 76.2
FvH4_6g26210 Fragaria vesca HOM05D003674 ORTHO05D004226 7.9e-73 277.3 172 75.6
Eucgr.K01030 Eucalyptus grandis HOM05D003674 ORTHO05D004226 1.0e-72 276.9 172 76.2
QL08p038784 Quercus lobata HOM05D003674 ORTHO05D004226 1.0e-72 276.9 172 76.2
QL08p038841 Quercus lobata HOM05D003674 ORTHO05D004226 1.0e-72 276.9 172 75.6
Oeu058850.1 Olea europaea HOM05D003674 ORTHO05D004226 1.4e-72 276.6 172 79.1
FAN09G3196 Fragaria x ananassa HOM05D000230 ORTHO05D004226 2.3e-72 275.8 172 75.6
Manes.13G146400 Manihot esculenta HOM05D003674 ORTHO05D004226 6.7e-72 274.2 172 76.2
RcHm_v2.0_Chr2g0126551 Rosa chinensis HOM05D003674 ORTHO05D004226 6.7e-72 274.2 172 74.4
Cfa014617 Carpinus fangiana HOM05D003674 ORTHO05D004226 1.1e-71 273.5 172 75.6
Oeu017490.2 Olea europaea HOM05D003674 ORTHO05D004226 1.5e-71 273.1 172 76.7
Actinidia11076 Actinidia chinensis HOM05D003674 ORTHO05D004226 2.6e-71 272.3 172 74.4
MELO3C018734.2 Cucumis melo HOM05D003674 ORTHO05D004226 2.6e-71 272.3 172 75.0
CsaV3_7G004450 Cucumis sativus L. HOM05D003674 ORTHO05D004226 4.4e-71 271.6 172 74.4
CiPaw.04G126100 Carya illinoinensis HOM05D003674 ORTHO05D004226 5.7e-71 271.2 172 76.2
Duzib132G0159 Durio zibethinus HOM05D003674 ORTHO05D004226 7.4e-71 270.8 172 76.2
RcHm_v2.0_Chr2g0126531 Rosa chinensis HOM05D003674 ORTHO05D004226 9.7e-71 270.4 172 74.4
ClCG07G002890 Citrullus lanatus HOM05D003674 ORTHO05D004226 1.3e-70 270.0 172 75.0
Rhsim06G0142000 Rhododendron simsii HOM05D003674 ORTHO05D004226 1.3e-70 270.0 172 75.0
Thecc.02G180000 Theobroma cacao HOM05D003674 ORTHO05D004226 1.3e-70 270.0 172 76.2
COL.COLO4_30194 Corchorus olitorius HOM05D003674 ORTHO05D004226 1.7e-70 269.6 172 75.0
Ciclev10014388m.g Citrus clementina HOM05D003674 ORTHO05D004226 3.7e-70 268.5 172 73.3
FAN02G2237 Fragaria x ananassa HOM05D003674 ORTHO05D004226 3.7e-70 268.5 186 70.4
Sed0011332 Sechium edule HOM05D003674 ORTHO05D004226 3.7e-70 268.5 172 75.0
Potri.013G131100 Populus trichocarpa HOM05D003674 ORTHO05D004226 4.8e-70 268.1 172 75.6
PGR142G3148 Punica granatum HOM05D003674 ORTHO05D004226 6.3e-70 267.7 172 76.2
Actinidia11032 Actinidia chinensis HOM05D003674 ORTHO05D004226 1.1e-69 266.9 172 72.7
MD17G1240200 Malus domestica HOM05D003674 ORTHO05D004226 1.4e-69 266.5 172 73.8
SGA_v2.0_scaffold322G48614 Striga asiatica HOM05D003674 ORTHO05D004226 4.1e-69 265.0 172 75.6
Lalb_Chr22g0356561 Lupinus albus HOM05D003674 ORTHO05D004226 7.0e-69 264.2 172 72.1
MSTRG.14342 Avicennia marina HOM05D003674 ORTHO05D004226 1.2e-68 263.5 172 76.2
HanXRQChr10g0297111 Helianthus annuus HOM05D003674 ORTHO05D004226 1.5e-68 263.1 172 72.7
MD09G1247300 Malus domestica HOM05D003674 ORTHO05D004226 1.5e-68 263.1 172 72.1
GSVIVG01020549001 Vitis vinifera HOM05D003674 ORTHO05D004226 1.5e-68 263.1 172 73.3
Aqoxy4G00814 Aquilegia oxysepala HOM05D003674 ORTHO05D004226 2.6e-68 262.3 172 72.7
QL08p038913 Quercus lobata HOM05D003674 ORTHO05D004226 2.6e-68 262.3 171 74.9
Gorai.005G201400 Gossypium raimondii HOM05D003674 ORTHO05D004226 3.5e-68 261.9 172 74.4
CiPaw.03G177300 Carya illinoinensis HOM05D003674 ORTHO05D004226 5.9e-68 261.2 172 73.8
Cc05_g07170 Coffea canephora HOM05D003674 ORTHO05D004226 5.9e-68 261.2 172 73.3
Gohir.A03G156500 Gossypium hirsutum HOM05D003674 ORTHO05D004226 7.7e-68 260.8 172 73.8
ECA234G3736 Erigeron canadensis HOM05D003674 ORTHO05D004226 1.0e-67 260.4 172 72.1
Oeu017491.1 Olea europaea HOM05D003674 ORTHO05D004226 1.0e-67 260.4 172 72.1
MBI06_g04180_MAGBIO Magnolia biondii HOM05D003674 ORTHO05D004226 1.7e-67 259.6 171 75.4
Sabra13G0110800 Salix brachista HOM05D003674 ORTHO05D004226 2.9e-67 258.8 171 73.7
THA.LOC104826033 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 5.0e-67 258.1 172 70.3
arahy.Tifrunner.gnm1.ann1.1DM7TY Arachis hypogaea HOM05D003674 ORTHO05D004226 6.5e-67 257.7 172 70.9
Glyma.13G296900 Glycine max HOM05D003674 ORTHO05D004226 6.5e-67 257.7 173 72.3
Zm00001eb360320 Zea mays HOM05D003674 ORTHO05D004226 6.5e-67 257.7 172 69.8
Glyma.12G204400 Glycine max HOM05D003674 ORTHO05D004226 8.5e-67 257.3 173 71.7
arahy.Tifrunner.gnm1.ann1.1TZ75T Arachis hypogaea HOM05D003674 ORTHO05D004226 1.1e-66 256.9 172 70.9
Sabra13G0110700 Salix brachista HOM05D003674 ORTHO05D004226 1.9e-66 256.1 172 72.7
THA.LOC104801172 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 1.9e-66 256.1 172 70.9
Nitab4.5_0000512g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 2.5e-66 255.8 172 70.9
Lsat_1_v5_gn_4_66721 Lactuca sativa HOM05D003674 ORTHO05D004226 3.2e-66 255.4 172 70.3
Migut.H01178 Erythranthe guttata HOM05D003674 ORTHO05D004226 5.5e-66 254.6 172 71.5
EL10Ac9g20767 Beta vulgaris HOM05D003674 ORTHO05D004226 7.2e-66 254.2 172 72.1
Sp6g03570 Schrenkiella parvula HOM05D003674 ORTHO05D004226 7.2e-66 254.2 172 70.9
BcaB01g01906 Brassica carinata HOM05D003674 ORTHO05D004226 9.4e-66 253.8 172 69.8
Lj3g0012901 Lotus japonicus HOM05D003674 ORTHO05D004226 9.4e-66 253.8 173 71.1
Nitab4.5_0004344g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 9.4e-66 253.8 172 69.2
Thhalv10029480m.g Eutrema salsugineum HOM05D003674 ORTHO05D004226 1.2e-65 253.4 172 69.8
CAN.G248.4 Capsicum annuum HOM05D003674 ORTHO05D004226 1.6e-65 253.1 172 69.8
SalBow1G3138 Salvia bowleyana HOM05D003674 ORTHO05D004226 1.6e-65 253.1 173 69.9
BcaC04g23961 Brassica carinata HOM05D003674 ORTHO05D004226 2.1e-65 252.7 172 69.2
BolC9t53217H Brassica oleracea HOM05D003674 ORTHO05D004226 2.1e-65 252.7 172 69.2
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 2.1e-65 252.7 172 69.2
Aa31LG5G2940 Aethionema arabicum HOM05D003674 ORTHO05D004226 2.7e-65 252.3 172 70.9
A09p02830 Brassica napus HOM05D000230 ORTHO05D000176 2.7e-65 252.3 172 69.2
BraA09t35927Z Brassica rapa HOM05D003674 ORTHO05D004226 2.7e-65 252.3 172 69.2
Os01g0678500 Oryza sativa ssp. japonica HOM05D003674 ORTHO05D004226 3.6e-65 251.9 172 69.2
Solyc07g053970.3 Solanum lycopersicum HOM05D003674 ORTHO05D004226 4.7e-65 251.5 172 69.2
SalBow1G0286 Salvia bowleyana HOM05D003674 ORTHO05D004226 6.1e-65 251.1 173 69.9
BcaC01g06668 Brassica carinata HOM05D003674 ORTHO05D004226 8.0e-65 250.8 172 69.2
A03p30360 Brassica napus HOM05D003674 ORTHO05D004226 8.0e-65 250.8 172 69.2
C03p36660 Brassica napus HOM05D003674 ORTHO05D004226 8.0e-65 250.8 172 69.2
BolC3t15980H Brassica oleracea HOM05D003674 ORTHO05D004226 8.0e-65 250.8 172 69.2
BraA03t12218Z Brassica rapa HOM05D003674 ORTHO05D004226 8.0e-65 250.8 172 69.2
AL6G49310 Arabidopsis lyrata HOM05D003674 ORTHO05D004226 1.4e-64 250.0 172 69.2
CARHR251990 Cardamine hirsuta HOM05D003674 ORTHO05D004226 1.4e-64 250.0 172 69.2
VMungo0464G1662 Vigna mungo HOM05D003674 ORTHO05D004226 1.8e-64 249.6 173 71.1
BcaB01g02542 Brassica carinata HOM05D003674 ORTHO05D004226 2.3e-64 249.2 172 69.2
Psat5g272320 Pisum sativum HOM05D003674 ORTHO05D004226 3.0e-64 248.8 173 69.4
AT4G03560 Arabidopsis thaliana HOM05D003674 ORTHO05D004226 3.9e-64 248.4 172 69.2
Hund01095 Selenicereus undatus HOM05D003674 ORTHO05D004226 8.8e-64 247.3 172 70.9
unitig_749.g13960 Utricularia gibba HOM05D003674 ORTHO05D004226 8.8e-64 247.3 173 68.2
HPP92_008135 Vanilla planifolia HOM05D003674 ORTHO05D004226 8.8e-64 247.3 172 69.2
Carub.0006s3351 Capsella rubella HOM05D003674 ORTHO05D004226 1.1e-63 246.9 172 68.6
DCAR_019181 Daucus carota HOM05D003674 ORTHO05D004226 1.1e-63 246.9 172 68.6
Peaxi162Scf00132g00119 Petunia axillaris HOM05D003674 ORTHO05D004226 1.1e-63 246.9 172 69.2
Phvul.004G108300 Phaseolus vulgaris HOM05D003674 ORTHO05D004226 4.4e-63 245.0 173 68.2
PSO210G7128 Papaver somniferum HOM05D003674 ORTHO05D004226 1.7e-62 243.0 173 66.5
TPR.G6424 Trifolium pratense HOM05D003674 ORTHO05D004226 2.8e-62 242.3 173 68.8
Medtr2g090380 Medicago truncatula HOM05D003674 ORTHO05D004226 1.1e-61 240.4 173 67.6
PSO832G0572 Papaver somniferum HOM05D003674 ORTHO05D004226 1.8e-61 239.6 173 65.9
vmacro12305 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 4.5e-60 235.0 237 53.6
Mapoly0002s0274 Marchantia polymorpha HOM05D003674 ORTHO05D004226 1.7e-59 233.0 172 64.0
CSS0020583 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 2.5e-58 229.2 172 66.3
Ah.01g004260 Amaranthus hybridus HOM05D003674 ORTHO05D004226 8.0e-57 224.2 171 65.5
HanXRQChr06g0179591 Helianthus annuus HOM05D003674 ORTHO05D004226 1.5e-55 219.9 171 62.6
PSO675G3793 Papaver somniferum HOM05D003674 ORTHO05D004226 2.0e-55 219.5 172 59.9
DCAR_013011 Daucus carota HOM05D003674 ORTHO05D004226 1.3e-54 216.9 171 60.2
Pp3c15_12230 Physcomitrium patens HOM05D003674 ORTHO05D004226 4.5e-52 208.4 172 57.6
CAN.G1472.4 Capsicum annuum HOM05D003674 ORTHO05D004226 3.2e-50 202.2 172 57.0
AagrBONN_evm.TU.Sc2ySwM_344.5080 Anthoceros agrestis HOM05D003674 ORTHO05D004226 2.3e-48 196.1 173 52.6
Pp3c1_6270 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.3e-48 196.1 171 53.2
Pp3c1_6272 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.3e-48 196.1 171 53.2
DCAR_013010 Daucus carota HOM05D003674 ORTHO05D004226 3.4e-47 192.2 178 55.1
Oeu010988.1 Olea europaea HOM05D003674 ORTHO05D004226 1.2e-44 183.7 125 71.2
MSTRG.14332 Avicennia marina HOM05D003674 ORTHO05D004226 9.5e-42 174.1 115 70.4
Peaxi162Scf00132g00117 Petunia axillaris HOM05D003674 ORTHO05D004226 2.1e-41 172.9 164 54.3
AUR62042592 Chenopodium quinoa HOM05D003674 ORTHO05D004226 6.1e-41 171.4 172 53.5
AUR62037356 Chenopodium quinoa HOM05D003674 ORTHO05D004226 8.0e-41 171.0 172 52.9
MSTRG.14335 Avicennia marina HOM05D003674 ORTHO05D004226 4.0e-40 168.7 126 64.3
Gohir.D02G179566 Gossypium hirsutum HOM05D003674 ORTHO05D004226 2.8e-33 146.0 82 78.0
Lsat_1_v5_gn_4_64281 Lactuca sativa HOM05D003674 ORTHO05D004226 3.1e-32 142.5 147 50.3
Prupe.3G138600 Prunus persica HOM05D003674 ORTHO05D004226 7.5e-31 137.9 172 44.8
Nitab4.5_0012835g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.6e-28 130.2 148 48.0
Ca_01498_v3 Cicer arietinum L. HOM05D003674 ORTHO05D004226 3.9e-27 125.6 96 66.7
SHI10401 Sapria himalayana HOM05D003674 ORTHO05D004226 7.3e-26 121.3 95 65.3
Hma1.2p1_2586F.1_g324940 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 1.3e-22 110.5 58 82.8
Gohir.D02G179632 Gossypium hirsutum HOM05D003674 ORTHO05D004226 2.3e-19 99.8 71 70.4
SEGI_04644 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 4.1e-13 79.0 71 52.1
Pp3c1_28370 Physcomitrium patens HOM05D003674 ORTHO05D004226 9.2e-13 77.8 155 32.9
ATR0737G001 Amborella trichopoda HOM05D003674 ORTHO05D004226 2.1e-12 76.6 45 77.8
Pp3c18_10190 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.1e-12 76.6 158 31.6
Pp3c14_20770 Physcomitrium patens HOM05D003674 ORTHO05D004226 4.6e-12 75.5 158 31.6
Pp3c19_18680 Physcomitrium patens HOM05D003674 ORTHO05D004226 4.6e-12 75.5 151 31.1
Pp3c2_10230 Physcomitrium patens HOM05D003674 ORTHO05D004226 6.0e-12 75.1 140 37.1
Pp3c21_11410 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.0e-11 74.3 151 33.1
Mapoly0062s0036 Marchantia polymorpha HOM05D003674 ORTHO05D004226 3.6e-09 65.9 172 27.3
CBR_g54426 Chara braunii HOM05D003674 ORTHO05D004226 5.2e-08 62.0 116 32.8
SHI10399 Sapria himalayana HOM05D003674 ORTHO05D004226 5.2e-08 62.0 36 72.2
BcaC01g01194 Brassica carinata HOM05D003674 ORTHO05D004226 1.5e-07 60.5 46 63.0


User provided reference genes

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