Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06542 Nelumbo nucifera HOM05D002724 ORTHO05D002995 2.3e-70 268.9 140 100.0
Nn1g04091 Nelumbo nucifera HOM05D002724 ORTHO05D002995 9.2e-56 220.3 140 83.6
TAR629G0183 Trochodendron aralioides HOM05D002724 ORTHO05D002995 6.8e-51 204.1 133 76.7
CsaV3_1G017090 Cucumis sativus L. HOM05D002724 ORTHO05D002995 8.4e-49 197.2 139 72.7
Manes.16G027900 Manihot esculenta HOM05D002724 ORTHO05D002995 1.4e-48 196.4 130 76.2
Manes.17G045800 Manihot esculenta HOM05D002724 ORTHO05D002995 2.4e-48 195.7 130 75.4
MELO3C025549.2 Cucumis melo HOM05D002724 ORTHO05D002995 7.1e-48 194.1 139 72.7
Thecc.06G187300 Theobroma cacao HOM05D002724 ORTHO05D002995 1.6e-47 193.0 139 73.4
Sed0008019 Sechium edule HOM05D002724 ORTHO05D002995 3.5e-47 191.8 133 73.7
PSO210G5715 Papaver somniferum HOM05D002724 ORTHO05D002995 1.0e-46 190.3 139 67.6
Potri.011G052800 Populus trichocarpa HOM05D002724 ORTHO05D002995 1.7e-46 189.5 126 77.8
PSO832G3329 Papaver somniferum HOM05D002724 ORTHO05D002995 2.3e-46 189.1 139 67.6
Prupe.4G047600 Prunus persica HOM05D002724 ORTHO05D002995 2.3e-46 189.1 140 70.0
AT4G04910 Arabidopsis thaliana HOM05D002724 ORTHO05D002995 3.0e-46 188.7 127 74.8
Carub.0006s3283 Capsella rubella HOM05D002724 ORTHO05D002995 3.0e-46 188.7 127 74.8
A03p30230 Brassica napus HOM05D002724 ORTHO05D002995 3.9e-46 188.3 127 74.8
Potri.004G043900 Populus trichocarpa HOM05D002724 ORTHO05D002995 3.9e-46 188.3 126 77.0
Sp6g04050 Schrenkiella parvula HOM05D002724 ORTHO05D002995 3.9e-46 188.3 127 74.8
SpUn0051_0030 Schrenkiella parvula HOM05D002724 ORTHO05D002995 3.9e-46 188.3 127 74.8
THA.LOC104812936 Tarenaya hassleriana HOM05D002724 ORTHO05D002995 3.9e-46 188.3 139 69.8
Duzib160G0569 Durio zibethinus HOM05D002724 ORTHO05D002995 5.1e-46 188.0 139 70.5
AL6G48420 Arabidopsis lyrata HOM05D002724 ORTHO05D002995 6.6e-46 187.6 127 74.0
CARHR252620 Cardamine hirsuta HOM05D002724 ORTHO05D002995 6.6e-46 187.6 139 71.2
CSS0027753 Camellia sinensis var. sinensis HOM05D002724 ORTHO05D002995 8.6e-46 187.2 139 71.9
C03p36480 Brassica napus HOM05D002724 ORTHO05D002995 1.1e-45 186.8 127 74.0
Thhalv10028462m.g Eutrema salsugineum HOM05D002724 ORTHO05D002995 1.9e-45 186.0 140 71.4
MD05G1312500 Malus domestica HOM05D002724 ORTHO05D002995 5.6e-45 184.5 140 67.9
THA.LOC104806293 Tarenaya hassleriana HOM05D002724 ORTHO05D002995 5.6e-45 184.5 139 68.3
CiPaw.13G137300 Carya illinoinensis HOM05D002724 ORTHO05D002995 9.6e-45 183.7 133 70.7
CSS0016915 Camellia sinensis var. sinensis HOM05D002724 ORTHO05D002995 1.6e-44 183.0 125 74.4
Duzib192G0701 Durio zibethinus HOM05D002724 ORTHO05D002995 2.8e-44 182.2 139 68.3
CANSAT35G0352 Cannabis sativa HOM05D002724 ORTHO05D002995 4.7e-44 181.4 139 70.5
Glyma.07G195900 Glycine max HOM05D002724 ORTHO05D002995 4.7e-44 181.4 135 69.6
MD10G1294300 Malus domestica HOM05D002724 ORTHO05D002995 6.2e-44 181.0 140 67.9
Ciclev10011146m.g Citrus clementina HOM05D002724 ORTHO05D002995 8.1e-44 180.6 140 68.6
Hma1.2p1_0885F.1_g232610 Hydrangea macrophylla HOM05D002724 ORTHO05D002995 8.1e-44 180.6 139 67.6
RcHm_v2.0_Chr5g0008441 Rosa chinensis HOM05D002724 ORTHO05D002995 8.1e-44 180.6 129 75.2
FvH4_4g01371 Fragaria vesca HOM05D002724 ORTHO05D002995 1.1e-43 180.3 134 71.6
Gorai.010G153600 Gossypium raimondii HOM05D002724 ORTHO05D002995 5.2e-43 177.9 133 70.7
Atru.chr12.2148 Acer truncatum HOM05D002724 ORTHO05D002995 6.9e-43 177.6 137 67.9
Phvul.002G228500 Phaseolus vulgaris HOM05D002724 ORTHO05D002995 8.9e-43 177.2 134 67.9
Glyma.13G180100 Glycine max HOM05D002724 ORTHO05D002995 1.2e-42 176.8 135 67.4
Gohir.D06G131800 Gossypium hirsutum HOM05D002724 ORTHO05D002995 1.2e-42 176.8 139 66.2
QL05p060587 Quercus lobata HOM05D002724 ORTHO05D002995 1.2e-42 176.8 146 65.1
Gohir.A06G126900 Gossypium hirsutum HOM05D002724 ORTHO05D002995 1.5e-42 176.4 139 66.2
GSVIVG01014341001 Vitis vinifera HOM05D002724 ORTHO05D002995 2.0e-42 176.0 126 74.6
Eucgr.E03294 Eucalyptus grandis HOM05D002724 ORTHO05D002995 2.6e-42 175.6 139 63.3
PGR004G1438 Punica granatum HOM05D002724 ORTHO05D002995 2.6e-42 175.6 139 65.5
AL7G31640 Arabidopsis lyrata HOM05D002724 ORTHO05D002995 4.4e-42 174.9 139 64.7
Migut.H01936 Erythranthe guttata HOM05D002724 ORTHO05D002995 4.4e-42 174.9 126 68.3
FvH4_4g01320 Fragaria vesca HOM05D002724 ORTHO05D002995 5.8e-42 174.5 134 68.7
TAR627G0194 Trochodendron aralioides HOM05D002724 ORTHO05D002995 1.3e-41 173.3 141 65.2
FvH4_3g09180 Fragaria vesca HOM05D002724 ORTHO05D002995 2.2e-41 172.6 126 72.2
QL05p060484 Quercus lobata HOM05D002724 ORTHO05D002995 3.8e-41 171.8 146 63.7
Gohir.A06G210200 Gossypium hirsutum HOM05D002724 ORTHO05D002995 4.9e-41 171.4 139 64.7
TWI38G0591 Tripterygium wilfordii HOM05D002724 ORTHO05D002995 6.4e-41 171.0 139 65.5
Rhsim06G0198500 Rhododendron simsii HOM05D002724 ORTHO05D002995 8.4e-41 170.6 156 59.6
Cfa000464 Carpinus fangiana HOM05D002724 ORTHO05D002995 1.1e-40 170.2 128 70.3
FAN16G0141 Fragaria x ananassa HOM05D002724 ORTHO05D002995 1.4e-40 169.9 126 70.6
Gohir.D06G210800 Gossypium hirsutum HOM05D002724 ORTHO05D002995 1.9e-40 169.5 139 64.0
Gorai.010G255500 Gossypium raimondii HOM05D002724 ORTHO05D002995 1.9e-40 169.5 139 64.0
Lj8A156G76 Lonicera japonica HOM05D002724 ORTHO05D002995 1.9e-40 169.5 127 69.3
CsaV3_UNG045320 Cucumis sativus L. HOM05D002724 ORTHO05D002995 4.2e-40 168.3 140 65.0
ECA236G0664 Erigeron canadensis HOM05D002724 ORTHO05D002995 5.4e-40 167.9 139 62.6
FAN13G1355 Fragaria x ananassa HOM05D002724 ORTHO05D002995 9.3e-40 167.2 127 69.3
FAN25G1567 Fragaria x ananassa HOM05D002724 ORTHO05D002995 1.2e-39 166.8 149 61.7
BolC3t15961H Brassica oleracea HOM05D002724 ORTHO05D002995 1.6e-39 166.4 127 66.9
CANSAT11G0259 Cannabis sativa HOM05D002724 ORTHO05D002995 2.7e-39 165.6 133 68.4
C09p32960 Brassica napus HOM05D002724 ORTHO05D002995 3.5e-39 165.2 139 63.3
BraA03t12207Z Brassica rapa HOM05D002724 ORTHO05D002995 7.8e-39 164.1 127 68.5
Lj4g0025106 Lotus japonicus HOM05D002724 ORTHO05D002995 1.3e-38 163.3 137 63.5
PGSC0003DMG401029739 Solanum tuberosum HOM05D002724 ORTHO05D002995 1.7e-38 162.9 124 64.5
Cpa.g.sc27.27 Carica papaya HOM05D002724 ORTHO05D002995 2.3e-38 162.5 151 62.3
Aa31LG9G9580 Aethionema arabicum HOM05D002724 ORTHO05D002995 8.7e-38 160.6 150 60.0
HanXRQChr15g0494651 Helianthus annuus HOM05D002724 ORTHO05D002995 1.1e-37 160.2 139 64.0
AL7G32210 Arabidopsis lyrata HOM05D002724 ORTHO05D002995 1.5e-37 159.8 126 65.9
A09p26000 Brassica napus HOM05D002724 ORTHO05D002995 1.9e-37 159.5 139 62.6
BolC9t56131H Brassica oleracea HOM05D002724 ORTHO05D002995 2.5e-37 159.1 151 57.6
Eucgr.E03298 Eucalyptus grandis HOM05D002724 ORTHO05D002995 3.3e-37 158.7 146 60.3
vmacro11862 Vaccinium macrocarpon HOM05D002724 ORTHO05D002995 4.3e-37 158.3 194 50.5
Psat7g113520 Pisum sativum HOM05D002724 ORTHO05D002995 7.3e-37 157.5 141 59.6
Rhsim04G0021300 Rhododendron simsii HOM05D002724 ORTHO05D002995 9.6e-37 157.1 129 67.4
Aqoxy7G02579 Aquilegia oxysepala HOM05D002724 ORTHO05D002995 1.6e-36 156.4 134 59.7
VMungo0251G0637 Vigna mungo HOM05D002724 ORTHO05D002995 2.1e-36 156.0 126 67.5
Medtr4g088885 Medicago truncatula HOM05D002724 ORTHO05D002995 2.8e-36 155.6 146 60.3
Sabra11G0036700 Salix brachista HOM05D002724 ORTHO05D002995 1.8e-35 152.9 146 60.3
arahy.Tifrunner.gnm1.ann1.9ZT65R Arachis hypogaea HOM05D002724 ORTHO05D002995 2.4e-35 152.5 133 60.9
arahy.Tifrunner.gnm1.ann1.JB3DWX Arachis hypogaea HOM05D002724 ORTHO05D002995 2.4e-35 152.5 133 60.9
BolC1t02617H Brassica oleracea HOM05D002724 ORTHO05D002995 3.1e-35 152.1 139 58.3
Lsat_1_v5_gn_7_105121 Lactuca sativa HOM05D002724 ORTHO05D002995 3.1e-35 152.1 139 61.2
Peaxi162Scf00027g00235 Petunia axillaris HOM05D002724 ORTHO05D002995 3.1e-35 152.1 139 59.0
Lalb_Chr09g0327631 Lupinus albus HOM05D002724 ORTHO05D002995 9.0e-35 150.6 127 63.8
AL7G50070 Arabidopsis lyrata HOM05D002724 ORTHO05D002995 1.2e-34 150.2 128 64.1
CDE08G0699 Ceratophyllum demersum HOM05D002724 ORTHO05D002995 2.6e-34 149.1 130 56.9
Aqoxy4G00812 Aquilegia oxysepala HOM05D002724 ORTHO05D002995 3.4e-34 148.7 135 54.1
Lj1A843G46 Lonicera japonica HOM05D002724 ORTHO05D002995 3.4e-34 148.7 128 63.3
A01p21430 Brassica napus HOM05D002724 ORTHO05D002995 9.9e-34 147.1 145 56.6
BraA01t02048Z Brassica rapa HOM05D002724 ORTHO05D002995 9.9e-34 147.1 139 58.3
BcaC09g50311 Brassica carinata HOM05D002724 ORTHO05D002995 1.7e-33 146.4 139 56.1
DCAR_013103 Daucus carota HOM05D002724 ORTHO05D002995 2.2e-33 146.0 152 55.3
Sp7g19890 Schrenkiella parvula HOM05D002724 ORTHO05D002995 1.1e-32 143.7 127 61.4
BraA09t38166Z Brassica rapa HOM05D002724 ORTHO05D002995 2.4e-32 142.5 151 53.6
Oeu019329.2 Olea europaea HOM05D002724 ORTHO05D002995 3.2e-32 142.1 146 58.9
Sc03g0009950 Simmondsia chinensis HOM05D002724 ORTHO05D002995 4.2e-32 141.7 126 57.9
Hund02192 Selenicereus undatus HOM05D002724 ORTHO05D002995 4.6e-31 138.3 126 54.0
BcaC04g21344 Brassica carinata HOM05D002724 ORTHO05D002995 7.9e-31 137.5 139 55.4
Oeu011340.2 Olea europaea HOM05D002724 ORTHO05D002995 1.0e-30 137.1 138 56.5
FAN11G1358 Fragaria x ananassa HOM05D002724 ORTHO05D002995 1.8e-30 136.3 127 61.4
Ca_18540_v3 Cicer arietinum L. HOM05D002724 ORTHO05D002995 3.0e-30 135.6 140 52.9
Actinidia09684 Actinidia chinensis HOM05D002724 ORTHO05D002995 3.9e-30 135.2 125 59.2
BcaNung00220 Brassica carinata HOM05D002724 ORTHO05D002995 1.9e-29 132.9 122 59.0
C01p26760 Brassica napus HOM05D002724 ORTHO05D002995 1.9e-29 132.9 163 47.9
Haze_06453 Corylus avellana HOM05D002724 ORTHO05D002995 1.9e-29 132.9 129 56.6
Os05g0519400 Oryza sativa ssp. japonica HOM05D002724 ORTHO05D002995 3.6e-28 128.6 128 52.3
Sc16g0006970 Simmondsia chinensis HOM05D002724 ORTHO05D002995 1.8e-27 126.3 125 56.8
Zm00001eb185960 Zea mays HOM05D002724 ORTHO05D002995 3.1e-27 125.6 127 52.8
Zm00001eb293810 Zea mays HOM05D002724 ORTHO05D002995 5.3e-27 124.8 127 52.8
Actinidia12809 Actinidia chinensis HOM05D002724 ORTHO05D002995 9.0e-27 124.0 124 57.3
SEGI_13478 Sequoiadendron giganteum HOM05D002724 ORTHO05D002995 9.0e-27 124.0 145 52.4
RcHm_v2.0_Chr4g0419821 Rosa chinensis HOM05D002724 ORTHO05D002995 3.4e-26 122.1 111 63.1
AUR62004451 Chenopodium quinoa HOM05D002724 ORTHO05D002995 2.9e-25 119.0 134 47.0
SMO122G0002 Selaginella moellendorffii HOM05D002724 ORTHO05D002995 2.9e-25 119.0 126 50.0
SEGI_12329 Sequoiadendron giganteum HOM05D002724 ORTHO05D002995 6.4e-25 117.9 185 43.8
EL10Ac4g08172 Beta vulgaris HOM05D002724 ORTHO05D002995 8.4e-25 117.5 130 46.2
Nitab4.5_0000207g0120 Nicotiana tabacum HOM05D002724 ORTHO05D002995 1.1e-24 117.1 140 52.1
AagrBONN_evm.TU.Sc2ySwM_117.1625 Anthoceros agrestis HOM05D002724 ORTHO05D002995 1.4e-24 116.7 134 50.7
Sopen01g047460 Solanum pennellii HOM05D002724 ORTHO05D002995 1.4e-24 116.7 127 52.8
BcaB05g23705 Brassica carinata HOM05D002724 ORTHO05D002995 1.9e-24 116.3 75 74.7
Pp3c2_19730 Physcomitrium patens HOM05D002724 ORTHO05D002995 3.2e-24 115.5 127 46.5
Solyc01g104920.3 Solanum lycopersicum HOM05D002724 ORTHO05D002995 4.2e-24 115.2 82 67.1
FAN21G2993 Fragaria x ananassa HOM05D002724 ORTHO05D002995 9.3e-24 114.0 126 52.4
Mapoly0104s0033 Marchantia polymorpha HOM05D002724 ORTHO05D002995 9.3e-24 114.0 135 49.6
AUR62034292 Chenopodium quinoa HOM05D002724 ORTHO05D002995 1.6e-23 113.2 114 50.9
vmacro09533 Vaccinium macrocarpon HOM05D002724 ORTHO05D002995 2.7e-23 112.5 73 76.7
BcaC09g51501 Brassica carinata HOM05D002724 ORTHO05D002995 4.6e-23 111.7 73 72.6
SalBow7G4564 Salvia bowleyana HOM05D002724 ORTHO05D002995 1.0e-22 110.5 174 43.7
RcHm_v2.0_Chr5g0005941 Rosa chinensis HOM05D002724 ORTHO05D002995 1.8e-22 109.8 76 72.4
SGA_v2.0_scaffold158G37495 Striga asiatica HOM05D002724 ORTHO05D002995 1.8e-22 109.8 132 50.8
CARHR228460 Cardamine hirsuta HOM05D002724 ORTHO05D002995 2.3e-22 109.4 82 64.6
FAN05G1795 Fragaria x ananassa HOM05D002724 ORTHO05D002995 6.7e-22 107.8 126 46.8
FAN05G4176 Fragaria x ananassa HOM05D002724 ORTHO05D002995 6.7e-22 107.8 126 46.8
Cc05_g12070 Coffea canephora HOM05D002724 ORTHO05D002995 8.7e-22 107.5 81 64.2
FvH4_6g18030 Fragaria vesca HOM05D002724 ORTHO05D002995 8.7e-22 107.5 126 46.8
FAN14G5819 Fragaria x ananassa HOM05D002724 ORTHO05D002995 1.9e-21 106.3 126 46.8
Ah.06g184140 Amaranthus hybridus HOM05D002724 ORTHO05D002995 2.5e-21 105.9 109 48.6
COL.COLO4_31469 Corchorus olitorius HOM05D002724 ORTHO05D002995 3.3e-21 105.5 139 47.5
DCAR_019550 Daucus carota HOM05D002724 ORTHO05D002995 5.6e-21 104.8 127 52.0
SGA_v2.0_scaffold46G17492 Striga asiatica HOM05D002724 ORTHO05D002995 5.6e-21 104.8 125 50.4
PGSC0003DMG402029739 Solanum tuberosum HOM05D002724 ORTHO05D002995 3.7e-20 102.1 187 39.0
FvH4_1g07580 Fragaria vesca HOM05D002724 ORTHO05D002995 4.8e-20 101.7 126 45.2
FAN19G0887 Fragaria x ananassa HOM05D002724 ORTHO05D002995 4.8e-20 101.7 126 45.2
SMO118G0057 Selaginella moellendorffii HOM05D002724 ORTHO05D002995 4.8e-20 101.7 126 43.7
HanXRQChr11g0328421 Helianthus annuus HOM05D002724 ORTHO05D002995 2.4e-19 99.4 126 49.2
FAN23G2429 Fragaria x ananassa HOM05D002724 ORTHO05D002995 3.1e-19 99.0 126 44.4
FAN26G3213 Fragaria x ananassa HOM05D002724 ORTHO05D002995 4.0e-19 98.6 126 44.4
Nitab4.5_0002383g0080 Nicotiana tabacum HOM05D002724 ORTHO05D002995 6.9e-19 97.8 123 52.8
Sp1g30090 Schrenkiella parvula HOM05D002724 ORTHO05D002995 9.0e-19 97.4 73 64.4
ATR0737G106 Amborella trichopoda HOM05D002724 ORTHO05D002995 1.2e-18 97.1 139 43.9
RcHm_v2.0_Chr3g0472291 Rosa chinensis HOM05D002724 ORTHO05D002995 1.3e-17 93.6 134 44.0
Migut.H01935 Erythranthe guttata HOM05D002724 ORTHO05D002995 2.2e-17 92.8 127 44.1
MBI07_g30175_MAGBIO Magnolia biondii HOM05D002724 ORTHO05D002995 6.5e-17 91.3 137 45.3
Mapoly0104s0034 Marchantia polymorpha HOM05D002724 ORTHO05D002995 1.1e-16 90.5 134 42.5
FAN28G0882 Fragaria x ananassa HOM05D002724 ORTHO05D002995 1.9e-16 89.7 106 49.1
SMO351G0294 Selaginella moellendorffii HOM05D002724 ORTHO05D002995 1.6e-15 86.7 78 55.1
FAN26G2256 Fragaria x ananassa HOM05D002724 ORTHO05D002995 2.1e-15 86.3 126 42.1
FvH4_4g07250 Fragaria vesca HOM05D002724 ORTHO05D002995 4.6e-15 85.1 64 70.3
PRCOL_00004338 Prasinoderma coloniale HOM05D002724 ORTHO05D002995 7.9e-15 84.3 125 43.2
unitig_747.g22010 Utricularia gibba HOM05D002724 ORTHO05D002995 1.8e-14 83.2 125 41.6
FAN09G0464 Fragaria x ananassa HOM05D001859 ORTHO05D001836 8.7e-14 80.9 51 78.4
FAN13G2558 Fragaria x ananassa HOM05D002724 ORTHO05D002995 1.1e-13 80.5 51 76.5
Hund22909 Selenicereus undatus HOM05D002724 ORTHO05D002995 9.6e-13 77.4 107 42.1
Sabra04G0027100 Salix brachista HOM05D002724 ORTHO05D002995 8.2e-12 74.3 69 59.4
QL05p060533 Quercus lobata HOM05D002724 ORTHO05D002995 1.1e-11 73.9 50 72.0
QL05p060525 Quercus lobata HOM05D002724 ORTHO05D002995 1.8e-11 73.2 47 78.7
arahy.Tifrunner.gnm1.ann1.20Y790 Arachis hypogaea HOM05D003641 ORTHO05D004915 1.2e-10 70.5 56 58.9
CAN.G199.6 Capsicum annuum HOM05D002724 ORTHO05D002995 3.4e-10 68.9 45 68.9
Eucgr.E03103 Eucalyptus grandis HOM05D002724 ORTHO05D002995 3.4e-10 68.9 55 63.6
FAN02G2915 Fragaria x ananassa HOM05D002724 ORTHO05D002995 6.5e-09 64.7 78 47.4
arahy.Tifrunner.gnm1.ann1.6JI55L Arachis hypogaea HOM05D009422 ORTHO05D086738 2.5e-08 62.8 50 60.0
CBR_g39167 Chara braunii HOM05D002724 ORTHO05D002995 7.2e-08 61.2 134 30.6
AUR62023499 Chenopodium quinoa HOM05D002724 ORTHO05D002995 1.6e-07 60.1 48 62.5
MCO11G655 Micromonas commoda HOM05D002724 ORTHO05D002995 1.6e-07 60.1 82 45.1
Cre10.g461250 Chlamydomonas reinhardtii HOM05D002724 ORTHO05D002995 1.0e-06 57.4 124 33.1
C04p31210 Brassica napus HOM05D031744 ORTHO05D032404 1.3e-06 57.0 52 59.6


User provided reference genes

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