Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06459 Nelumbo nucifera HOM05D000291 ORTHO05D277395 1.9e-68 262.3 127 100.0
Nn7g37453 Nelumbo nucifera HOM05D000291 ORTHO05D001358 4.6e-38 161.4 151 60.9
Nn8g39507 Nelumbo nucifera HOM05D000291 ORTHO05D001358 5.1e-37 157.9 99 79.8
Nn2g12086 Nelumbo nucifera HOM05D000291 ORTHO05D001358 1.1e-26 123.6 105 64.8
CSS0002122 Camellia sinensis var. sinensis HOM05D000291 ORTHO05D001358 2.5e-20 102.4 101 55.4
TAR625G0677 Trochodendron aralioides HOM05D000291 ORTHO05D001358 5.7e-20 101.3 126 48.4
Cpa.g.sc954.1 Carica papaya HOM05D000291 ORTHO05D001358 4.5e-17 91.7 91 57.1
COL.COLO4_18863 Corchorus olitorius HOM05D000291 ORTHO05D001358 5.9e-17 91.3 107 49.5
Gorai.001G033900 Gossypium raimondii HOM05D000291 ORTHO05D001358 5.0e-16 88.2 106 49.1
Thecc.09G024200 Theobroma cacao HOM05D000291 ORTHO05D001358 5.0e-16 88.2 109 49.5
Actinidia22341 Actinidia chinensis HOM05D000291 ORTHO05D001358 6.5e-16 87.8 100 50.0
Duzib168G0437 Durio zibethinus HOM05D000291 ORTHO05D001358 6.5e-16 87.8 105 49.5
Gohir.A07G028400 Gossypium hirsutum HOM05D000291 ORTHO05D001358 1.1e-15 87.0 109 47.7
Peaxi162Scf00870g00003 Petunia axillaris HOM05D000291 ORTHO05D001358 2.5e-15 85.9 96 52.1
PSO017G0748 Papaver somniferum HOM05D000291 ORTHO05D001358 4.2e-15 85.1 106 48.1
PSO170G4237 Papaver somniferum HOM05D000291 ORTHO05D001358 4.2e-15 85.1 106 48.1
Duzib187G1002 Durio zibethinus HOM05D000291 ORTHO05D001358 5.5e-15 84.7 106 49.1
Gohir.D07G032500 Gossypium hirsutum HOM05D000291 ORTHO05D001358 5.5e-15 84.7 109 46.8
Sopen08g009580 Solanum pennellii HOM05D000291 ORTHO05D001358 5.5e-15 84.7 95 51.6
Dinv30130 Davidia involucrata HOM05D000291 ORTHO05D001358 9.4e-15 84.0 92 52.2
Hma1.2p1_0243F.1_g100841 Hydrangea macrophylla HOM05D000291 ORTHO05D001358 9.4e-15 84.0 102 48.0
Gohir.A05G053600 Gossypium hirsutum HOM05D000291 ORTHO05D001358 1.2e-14 83.6 107 48.6
Nitab4.5_0000209g0250 Nicotiana tabacum HOM05D000291 ORTHO05D001358 2.1e-14 82.8 95 51.6
Nitab4.5_0001354g0040 Nicotiana tabacum HOM05D000291 ORTHO05D001358 2.1e-14 82.8 95 51.6
AUR62012377 Chenopodium quinoa HOM05D000291 ORTHO05D001358 2.7e-14 82.4 98 51.0
AUR62031524 Chenopodium quinoa HOM05D000291 ORTHO05D001358 2.7e-14 82.4 98 51.0
Nitab4.5_0013235g0010 Nicotiana tabacum HOM05D000291 ORTHO05D001358 4.6e-14 81.6 95 50.5
PGSC0003DMG400015846 Solanum tuberosum HOM05D000291 ORTHO05D001358 6.1e-14 81.3 95 48.4
Solyc08g059660.3 Solanum lycopersicum HOM05D000291 ORTHO05D001358 7.9e-14 80.9 95 49.5
CAN.G19.16 Capsicum annuum HOM05D000291 ORTHO05D001358 1.0e-13 80.5 95 49.5
PGSC0003DMG400013761 Solanum tuberosum HOM05D000291 ORTHO05D001358 1.4e-13 80.1 95 49.5
Gohir.D05G057400 Gossypium hirsutum HOM05D000291 ORTHO05D001358 2.3e-13 79.3 107 47.7
Gorai.009G058500 Gossypium raimondii HOM05D000291 ORTHO05D001358 2.3e-13 79.3 107 47.7
Lj7C723T7 Lonicera japonica HOM05D000291 ORTHO05D001358 2.3e-13 79.3 99 49.5
Solyc06g011450.3 Solanum lycopersicum HOM05D000291 ORTHO05D001358 2.3e-13 79.3 95 47.4
Sopen06g006550 Solanum pennellii HOM05D000291 ORTHO05D001358 3.0e-13 79.0 95 47.4
TAR636G1365 Trochodendron aralioides HOM05D000291 ORTHO05D001358 5.1e-13 78.2 126 41.3
ECA233G0203 Erigeron canadensis HOM05D000291 ORTHO05D001358 8.8e-13 77.4 96 50.0
Sc09g0008230 Simmondsia chinensis HOM05D000291 ORTHO05D001358 1.5e-12 76.6 96 49.0
CSS0014772 Camellia sinensis var. sinensis HOM05D000291 ORTHO05D001358 1.9e-12 76.3 96 49.0
Ah.10g035840 Amaranthus hybridus HOM05D000291 ORTHO05D001358 4.3e-12 75.1 98 46.9
Ah.10g035850 Amaranthus hybridus HOM05D000291 ORTHO05D001358 4.3e-12 75.1 98 46.9
EL10Ac2g04215 Beta vulgaris HOM05D000291 ORTHO05D001358 5.7e-12 74.7 99 48.5
Eucgr.C04109 Eucalyptus grandis HOM05D000291 ORTHO05D001358 7.4e-12 74.3 111 42.3
TAR626G1092 Trochodendron aralioides HOM05D000291 ORTHO05D001358 1.3e-11 73.6 82 51.2
Eucgr.C02768 Eucalyptus grandis HOM05D000291 ORTHO05D001358 1.7e-11 73.2 97 45.4
MSTRG.1726 Avicennia marina HOM05D000291 ORTHO05D001358 2.8e-11 72.4 97 47.4
Lalb_Chr23g0268481 Lupinus albus HOM05D000291 ORTHO05D001358 2.8e-11 72.4 187 32.6
Ciclev10007706m.g Citrus clementina HOM05D000291 ORTHO05D001358 6.3e-11 71.2 96 45.8
HanXRQChr13g0403001 Helianthus annuus HOM05D000291 ORTHO05D001358 8.2e-11 70.9 95 50.5
Lsat_1_v5_gn_6_21360 Lactuca sativa HOM05D000291 ORTHO05D001358 1.8e-10 69.7 97 44.3
Medtr3g106900 Medicago truncatula HOM05D000291 ORTHO05D001358 1.8e-10 69.7 95 47.4
HanXRQChr02g0050221 Helianthus annuus HOM05D000291 ORTHO05D001358 2.4e-10 69.3 98 46.9
Ca_15740_v3 Cicer arietinum L. HOM05D000291 ORTHO05D001358 3.1e-10 68.9 96 47.9
Manes.16G122400 Manihot esculenta HOM05D000291 ORTHO05D001358 3.1e-10 68.9 105 43.8
TWI63G1638 Tripterygium wilfordii HOM05D000291 ORTHO05D001358 3.1e-10 68.9 81 46.9
unitig_748.g8219 Utricularia gibba HOM05D000291 ORTHO05D001358 4.1e-10 68.6 97 47.4
Lalb_Chr08g0244101 Lupinus albus HOM05D000291 ORTHO05D001358 1.2e-09 67.0 86 51.2
unitig_32.g10921 Utricularia gibba HOM05D000291 ORTHO05D001358 1.2e-09 67.0 94 46.8
CARHR116020 Cardamine hirsuta HOM05D000291 ORTHO05D001358 1.5e-09 66.6 90 48.9
Aqoxy7G03325 Aquilegia oxysepala HOM05D000291 ORTHO05D001358 2.6e-09 65.9 118 44.9
Lj1g0018381 Lotus japonicus HOM05D000291 ORTHO05D001358 2.6e-09 65.9 113 44.2
Carub.0004s0509 Capsella rubella HOM05D000291 ORTHO05D001358 3.4e-09 65.5 86 48.8
TWI32G0991 Tripterygium wilfordii HOM05D000291 ORTHO05D001358 3.4e-09 65.5 81 44.4
Glyma.06G067800 Glycine max HOM05D000291 ORTHO05D001358 4.5e-09 65.1 99 47.5
PGR044G0748 Punica granatum HOM05D000291 ORTHO05D001358 4.5e-09 65.1 116 39.7
Thhalv10000078m.g Eutrema salsugineum HOM05D000291 ORTHO05D001358 5.9e-09 64.7 110 44.5
MD08G1150700 Malus domestica HOM05D000291 ORTHO05D001358 7.7e-09 64.3 110 44.5
MSTRG.26008 Avicennia marina HOM05D000291 ORTHO05D001358 1.0e-08 63.9 92 44.6
Hma1.2p1_0343F.1_g131020 Hydrangea macrophylla HOM05D000291 ORTHO05D001358 1.7e-08 63.2 64 54.7
MSTRG.14092 Avicennia marina HOM05D000291 ORTHO05D001358 2.9e-08 62.4 97 46.4
AL4G16850 Arabidopsis lyrata HOM05D000291 ORTHO05D001358 3.8e-08 62.0 100 45.0
ECA246G3497 Erigeron canadensis HOM05D000291 ORTHO05D001358 3.8e-08 62.0 94 47.9
Phvul.009G092600 Phaseolus vulgaris HOM05D000291 ORTHO05D001358 3.8e-08 62.0 107 44.9
Dinv08639 Davidia involucrata HOM05D000291 ORTHO05D001358 5.0e-08 61.6 102 43.1
HanXRQChr10g0296821 Helianthus annuus HOM05D000291 ORTHO05D001358 5.0e-08 61.6 93 47.3
Rhsim02G0201500 Rhododendron simsii HOM05D000291 ORTHO05D001358 5.0e-08 61.6 99 45.5
SalBow4G3352 Salvia bowleyana HOM05D000291 ORTHO05D001358 5.0e-08 61.6 98 45.9
CANSAT25G3163 Cannabis sativa HOM05D000291 ORTHO05D001358 6.5e-08 61.2 91 41.8
Sp7g30040 Schrenkiella parvula HOM05D000291 ORTHO05D001358 6.5e-08 61.2 96 46.9
Potri.018G026900 Populus trichocarpa HOM05D000291 ORTHO05D001358 8.5e-08 60.8 94 44.7
THA.LOC104803654 Tarenaya hassleriana HOM05D000291 ORTHO05D001358 8.5e-08 60.8 107 41.1
AT4G32285 Arabidopsis thaliana HOM05D000291 ORTHO05D001358 1.1e-07 60.5 95 43.2
BcaB06g28059 Brassica carinata HOM05D000291 ORTHO05D001358 1.1e-07 60.5 87 42.5
DCAR_001503 Daucus carota HOM05D000291 ORTHO05D001358 1.1e-07 60.5 97 42.3
Dinv36491 Davidia involucrata HOM05D000291 ORTHO05D001358 1.1e-07 60.5 66 56.1
Glyma.04G066400 Glycine max HOM05D000291 ORTHO05D001358 1.1e-07 60.5 110 45.5
vmacro06144 Vaccinium macrocarpon HOM05D000291 ORTHO05D001358 1.1e-07 60.5 48 60.4
BolC4t27070H Brassica oleracea HOM05D000291 ORTHO05D001358 1.4e-07 60.1 84 44.0
Cfa013141 Carpinus fangiana HOM05D000291 ORTHO05D001358 1.4e-07 60.1 103 40.8
Carub.0007s0830 Capsella rubella HOM05D000291 ORTHO05D001358 1.9e-07 59.7 85 44.7
CARHR240180 Cardamine hirsuta HOM05D000291 ORTHO05D001358 1.9e-07 59.7 97 45.4
AL7G19560 Arabidopsis lyrata HOM05D000291 ORTHO05D001358 2.5e-07 59.3 97 43.3
BcaC02g08351 Brassica carinata HOM05D000291 ORTHO05D001358 2.5e-07 59.3 83 45.8
C04p55340 Brassica napus HOM05D000291 ORTHO05D001358 2.5e-07 59.3 83 45.8
Cc08_g00580 Coffea canephora HOM05D000291 ORTHO05D001358 2.5e-07 59.3 97 44.3
Gorai.001G043600 Gossypium raimondii HOM05D000291 ORTHO05D001358 2.5e-07 59.3 38 71.1
Thecc.09G130100 Theobroma cacao HOM05D000291 ORTHO05D001358 3.2e-07 58.9 90 44.4
Thhalv10024663m.g Eutrema salsugineum HOM05D000291 ORTHO05D001358 4.2e-07 58.5 97 43.3
Prupe.1G481500 Prunus persica HOM05D000291 ORTHO05D001358 5.5e-07 58.2 112 41.1
Zm00001eb397650 Zea mays HOM05D000291 ORTHO05D001358 5.5e-07 58.2 92 43.5
Haze_21514 Corylus avellana HOM05D000291 ORTHO05D001358 7.2e-07 57.8 103 40.8
Rhsim03G0250000 Rhododendron simsii HOM05D000291 ORTHO05D001358 7.2e-07 57.8 60 55.0
Sp4g04660 Schrenkiella parvula HOM05D000291 ORTHO05D001358 7.2e-07 57.8 101 42.6
A04p19690 Brassica napus HOM05D000291 ORTHO05D001358 9.4e-07 57.4 84 42.9
CSS0029054 Camellia sinensis var. sinensis HOM05D000291 ORTHO05D001358 9.4e-07 57.4 89 41.6
CiPaw.07G223500 Carya illinoinensis HOM05D000291 ORTHO05D001358 9.4e-07 57.4 112 42.9
Cc06_g08190 Coffea canephora HOM05D000291 ORTHO05D001358 9.4e-07 57.4 96 43.8
Sabra06G0199200 Salix brachista HOM05D000291 ORTHO05D001358 9.4e-07 57.4 82 47.6
Sed0008664 Sechium edule HOM05D000291 ORTHO05D001358 9.4e-07 57.4 104 41.3
Gohir.D07G041200 Gossypium hirsutum HOM05D000291 ORTHO05D001358 1.2e-06 57.0 95 41.1
BraA04t17559Z Brassica rapa HOM05D000291 ORTHO05D001358 1.6e-06 56.6 83 44.6
Lalb_Chr11g0063691 Lupinus albus HOM05D000291 ORTHO05D001358 1.6e-06 56.6 122 45.1
SGA_v2.0_scaffold64G21942 Striga asiatica HOM05D000291 ORTHO05D001358 1.6e-06 56.6 88 40.9
HPP92_009859 Vanilla planifolia HOM05D000291 ORTHO05D001358 1.6e-06 56.6 81 44.4
VMungo1309G2744 Vigna mungo HOM05D000291 ORTHO05D001358 1.6e-06 56.6 108 41.7
Aqoxy7G03661 Aquilegia oxysepala HOM05D000291 ORTHO05D001358 2.1e-06 56.2 86 45.3
Duzib150G1556 Durio zibethinus HOM05D000291 ORTHO05D001358 2.1e-06 56.2 91 39.6
BcaC07g40868 Brassica carinata HOM05D000291 ORTHO05D001358 2.7e-06 55.8 80 45.0
BolC8t51437H Brassica oleracea HOM05D000291 ORTHO05D001358 2.7e-06 55.8 80 45.0
QL02p089540 Quercus lobata HOM05D000291 ORTHO05D001358 2.7e-06 55.8 38 63.2
Zm00001eb012390 Zea mays HOM05D000291 ORTHO05D001358 3.6e-06 55.5 91 39.6
unitig_32.g11525 Utricularia gibba HOM05D000291 ORTHO05D001358 4.7e-06 55.1 89 42.7
C08p38660 Brassica napus HOM05D000291 ORTHO05D001358 6.1e-06 54.7 64 48.4
Os03g0275500 Oryza sativa ssp. japonica HOM05D000291 ORTHO05D001358 6.1e-06 54.7 95 42.1
AT2G25430 Arabidopsis thaliana HOM05D000291 ORTHO05D001358 7.9e-06 54.3 92 42.4
A09p55670 Brassica napus HOM05D000291 ORTHO05D001358 7.9e-06 54.3 88 43.2
BraA09t40968Z Brassica rapa HOM05D000291 ORTHO05D001358 7.9e-06 54.3 88 43.2
DCAR_006214 Daucus carota HOM05D000291 ORTHO05D001358 7.9e-06 54.3 97 41.2
Duzib168G1735 Durio zibethinus HOM05D000291 ORTHO05D001358 7.9e-06 54.3 92 41.3
MBI04_g19387_MAGBIO Magnolia biondii HOM05D000291 ORTHO05D001358 7.9e-06 54.3 105 38.1
Psat5g029160 Pisum sativum HOM05D000291 ORTHO05D001358 7.9e-06 54.3 101 40.6


User provided reference genes

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