Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06334 Nelumbo nucifera HOM05D005035 ORTHO05D006141 4.3e-22 107.1 53 100.0
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 2.1e-13 78.2 44 86.4
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 2.1e-13 78.2 44 86.4
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 6.2e-13 76.6 46 80.4
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 1.8e-12 75.1 46 80.4
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 2.4e-12 74.7 38 94.7
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 2.4e-12 74.7 38 94.7
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 2.4e-12 74.7 38 94.7
Nn3g17009 Nelumbo nucifera HOM05D005035 ORTHO05D006141 2.4e-12 74.7 38 94.7
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 2.4e-12 74.7 38 94.7
QL02p078176 Quercus lobata HOM05D005035 ORTHO05D006141 2.4e-12 74.7 39 89.7
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 2.4e-12 74.7 39 89.7
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 2.4e-12 74.7 38 94.7
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 2.4e-12 74.7 38 94.7
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 2.4e-12 74.7 38 94.7
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 2.4e-12 74.7 38 94.7
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 2.4e-12 74.7 38 94.7
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 3.1e-12 74.3 50 74.0
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 4.0e-12 73.9 47 76.6
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 4.0e-12 73.9 48 81.2
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 4.0e-12 73.9 46 80.4
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 5.3e-12 73.6 38 92.1
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 5.3e-12 73.6 38 92.1
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 5.3e-12 73.6 38 92.1
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 5.3e-12 73.6 38 92.1
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 5.3e-12 73.6 38 92.1
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 5.3e-12 73.6 38 92.1
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 5.3e-12 73.6 38 92.1
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 5.3e-12 73.6 38 92.1
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 5.3e-12 73.6 38 92.1
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 5.3e-12 73.6 38 92.1
Gohir.D09G023800 Gossypium hirsutum HOM05D005035 ORTHO05D006141 5.3e-12 73.6 38 92.1
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 5.3e-12 73.6 38 92.1
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 5.3e-12 73.6 38 92.1
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 5.3e-12 73.6 38 92.1
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 5.3e-12 73.6 39 87.2
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 5.3e-12 73.6 38 92.1
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 5.3e-12 73.6 38 92.1
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 6.9e-12 73.2 38 89.5
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 6.9e-12 73.2 37 94.6
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 6.9e-12 73.2 38 89.5
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 6.9e-12 73.2 37 94.6
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 9.0e-12 72.8 38 89.5
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 9.0e-12 72.8 38 89.5
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 9.0e-12 72.8 46 78.3
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 1.2e-11 72.4 38 89.5
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 1.2e-11 72.4 38 89.5
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.2e-11 72.4 38 89.5
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.2e-11 72.4 38 89.5
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.2e-11 72.4 38 89.5
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 1.2e-11 72.4 38 89.5
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 1.2e-11 72.4 38 89.5
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 1.2e-11 72.4 38 89.5
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 1.2e-11 72.4 38 89.5
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 1.2e-11 72.4 47 76.6
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 1.2e-11 72.4 43 79.1
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 1.2e-11 72.4 43 79.1
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 1.2e-11 72.4 38 89.5
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 1.2e-11 72.4 38 89.5
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 1.5e-11 72.0 37 91.9
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 1.5e-11 72.0 37 91.9
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 1.5e-11 72.0 37 91.9
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 1.5e-11 72.0 37 91.9
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 1.5e-11 72.0 37 91.9
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 1.5e-11 72.0 37 91.9
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 1.5e-11 72.0 37 91.9
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 1.5e-11 72.0 37 91.9
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 1.5e-11 72.0 37 91.9
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 1.5e-11 72.0 37 91.9
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 1.5e-11 72.0 37 91.9
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 1.5e-11 72.0 37 91.9
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 1.5e-11 72.0 38 86.8
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 1.5e-11 72.0 47 78.7
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 1.5e-11 72.0 37 91.9
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 1.5e-11 72.0 37 91.9
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 1.5e-11 72.0 37 91.9
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 1.5e-11 72.0 38 89.5
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 1.5e-11 72.0 37 91.9
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 1.5e-11 72.0 48 72.9
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 1.5e-11 72.0 37 91.9
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 1.5e-11 72.0 37 91.9
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 2.0e-11 71.6 37 89.2
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 2.0e-11 71.6 37 89.2
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 2.0e-11 71.6 46 73.9
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 2.6e-11 71.2 43 86.0
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 2.6e-11 71.2 46 71.7
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 2.6e-11 71.2 38 86.8
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 2.6e-11 71.2 38 86.8
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 3.4e-11 70.9 44 79.5
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 3.4e-11 70.9 38 86.8
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 3.4e-11 70.9 37 89.2
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 4.5e-11 70.5 39 79.5
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 4.5e-11 70.5 38 89.5
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 4.5e-11 70.5 35 97.1
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 5.8e-11 70.1 43 76.7
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 5.8e-11 70.1 41 82.9
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 5.8e-11 70.1 38 86.8
vmacro18227 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 5.8e-11 70.1 43 79.1
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 7.6e-11 69.7 38 86.8
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 7.6e-11 69.7 47 72.3
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 7.6e-11 69.7 41 80.5
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 7.6e-11 69.7 37 86.5
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 7.6e-11 69.7 37 86.5
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 7.6e-11 69.7 37 89.2
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 7.6e-11 69.7 38 84.2
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 9.9e-11 69.3 38 84.2
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 9.9e-11 69.3 38 86.8
Atru.chr8.2413 Acer truncatum HOM05D005035 ORTHO05D006141 1.3e-10 68.9 38 84.2
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.3e-10 68.9 48 70.8
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.3e-10 68.9 48 70.8
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 1.3e-10 68.9 38 78.9
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 1.7e-10 68.6 38 84.2
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 1.7e-10 68.6 37 86.5
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 2.2e-10 68.2 37 83.8
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 2.2e-10 68.2 39 82.1
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 2.9e-10 67.8 34 94.1
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 3.8e-10 67.4 38 81.6
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 4.9e-10 67.0 37 86.5
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 6.4e-10 66.6 39 76.9
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 8.4e-10 66.2 34 91.2
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 1.1e-09 65.9 38 76.3
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 7.1e-09 63.2 37 78.4
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 9.3e-09 62.8 37 75.7
BcaC04g21225 Brassica carinata HOM05D005035 ORTHO05D006141 2.1e-08 61.6 35 85.7
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 1.8e-07 58.5 29 93.1
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 2.3e-07 58.2 35 71.4
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 3.0e-07 57.8 39 64.1
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 3.9e-07 57.4 37 67.6
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 1.5e-06 55.5 33 72.7
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 9.6e-06 52.8 28 82.1


User provided reference genes

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