Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05802 Nelumbo nucifera HOM05D002605 ORTHO05D002842 6.6e-59 230.7 136 100.0
Ciclev10031553m.g Citrus clementina HOM05D002605 ORTHO05D002842 1.4e-11 73.6 42 83.3
TAR622G0457 Trochodendron aralioides HOM05D002605 ORTHO05D002842 2.3e-11 72.8 42 81.0
Rhsim12G0089300 Rhododendron simsii HOM05D002605 ORTHO05D002842 3.9e-11 72.0 42 81.0
Aqoxy3G04314 Aquilegia oxysepala HOM05D002605 ORTHO05D002842 5.1e-11 71.6 42 78.6
TWI74G1069 Tripterygium wilfordii HOM05D002605 ORTHO05D002842 8.8e-11 70.9 42 81.0
AUR62017732 Chenopodium quinoa HOM05D002605 ORTHO05D002842 1.5e-10 70.1 42 76.2
AUR62032949 Chenopodium quinoa HOM05D002605 ORTHO05D002842 1.5e-10 70.1 42 76.2
Atru.chr11.1241 Acer truncatum HOM05D002605 ORTHO05D002842 2.0e-10 69.7 41 80.5
ATR0618G294 Amborella trichopoda HOM05D002605 ORTHO05D002842 2.0e-10 69.7 42 76.2
TWI53G1397 Tripterygium wilfordii HOM05D002605 ORTHO05D002842 2.0e-10 69.7 42 78.6
Ah.01g012760 Amaranthus hybridus HOM05D002605 ORTHO05D002842 2.6e-10 69.3 42 76.2
Nn4g25144 Nelumbo nucifera HOM05D002605 ORTHO05D002842 5.7e-10 68.2 42 73.8
PGR142G2512 Punica granatum HOM05D002605 ORTHO05D002842 5.7e-10 68.2 42 76.2
QL03p045458 Quercus lobata HOM05D002605 ORTHO05D002842 5.7e-10 68.2 42 76.2
Gohir.A04G109432 Gossypium hirsutum HOM05D002605 ORTHO05D002842 7.4e-10 67.8 42 73.8
Gohir.D04G149000 Gossypium hirsutum HOM05D002605 ORTHO05D002842 7.4e-10 67.8 42 73.8
Hund08635 Selenicereus undatus HOM05D002605 ORTHO05D002842 7.4e-10 67.8 42 69.0
vmacro15996 Vaccinium macrocarpon HOM05D002605 ORTHO05D002842 7.4e-10 67.8 42 76.2
Actinidia04345 Actinidia chinensis HOM05D002605 ORTHO05D002842 9.7e-10 67.4 42 73.8
Sed0012946 Sechium edule HOM05D002605 ORTHO05D002842 9.7e-10 67.4 42 71.4
EL10Ac9g22982 Beta vulgaris HOM05D002605 ORTHO05D002842 1.3e-09 67.0 42 73.8
CSS0024357 Camellia sinensis var. sinensis HOM05D002605 ORTHO05D002842 1.3e-09 67.0 42 73.8
ClCG01G008080 Citrullus lanatus HOM05D002605 ORTHO05D002842 1.3e-09 67.0 42 73.8
COL.COLO4_33108 Corchorus olitorius HOM05D002605 ORTHO05D002842 1.3e-09 67.0 52 61.5
SalBow2G0240 Salvia bowleyana HOM05D002605 ORTHO05D002842 1.3e-09 67.0 42 71.4
CANSAT78G0826 Cannabis sativa HOM05D002605 ORTHO05D002842 1.7e-09 66.6 42 73.8
Duzib248G0110 Durio zibethinus HOM05D002605 ORTHO05D002842 1.7e-09 66.6 42 71.4
Manes.04G162900 Manihot esculenta HOM05D002605 ORTHO05D002842 1.7e-09 66.6 42 73.8
SEGI_20250 Sequoiadendron giganteum HOM05D002605 ORTHO05D002842 1.7e-09 66.6 40 72.5
SEGI_21614 Sequoiadendron giganteum HOM05D002605 ORTHO05D002842 1.7e-09 66.6 42 69.0
Thecc.02G154700 Theobroma cacao HOM05D002605 ORTHO05D002842 2.2e-09 66.2 41 73.2
MELO3C005068.2 Cucumis melo HOM05D002605 ORTHO05D002842 2.8e-09 65.9 39 79.5
Gorai.012G135500 Gossypium raimondii HOM05D002605 ORTHO05D002842 2.8e-09 65.9 42 71.4
Nitab4.5_0008280g0010 Nicotiana tabacum HOM05D002605 ORTHO05D002842 2.8e-09 65.9 41 73.2
Os06g0730300 Oryza sativa ssp. japonica HOM05D002605 ORTHO05D002842 2.8e-09 65.9 42 71.4
PSO782G2004 Papaver somniferum HOM05D002605 ORTHO05D002842 2.8e-09 65.9 42 73.8
Solyc02g020890.4 Solanum lycopersicum HOM05D002605 ORTHO05D002842 2.8e-09 65.9 41 70.7
FAN03G2715 Fragaria x ananassa HOM05D002605 ORTHO05D002842 3.7e-09 65.5 41 75.6
MBI10_g18268_MAGBIO Magnolia biondii HOM05D002605 ORTHO05D002842 3.7e-09 65.5 42 64.3
Potri.005G089000 Populus trichocarpa HOM05D002605 ORTHO05D002842 3.7e-09 65.5 42 73.8
Sabra05G0073200 Salix brachista HOM05D002605 ORTHO05D002842 3.7e-09 65.5 42 73.8
CAN.G472.31 Capsicum annuum HOM05D002605 ORTHO05D002842 4.8e-09 65.1 39 74.4
Haze_11789 Corylus avellana HOM05D002605 ORTHO05D002842 4.8e-09 65.1 42 71.4
FvH4_4g37150 Fragaria vesca HOM05D002605 ORTHO05D002842 4.8e-09 65.1 42 69.0
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 4.8e-09 65.1 42 69.0
FAN17G1320 Fragaria x ananassa HOM05D002605 ORTHO05D002842 4.8e-09 65.1 42 69.0
Hma1.2p1_0044F.1_g026300 Hydrangea macrophylla HOM05D002605 ORTHO05D002842 4.8e-09 65.1 42 73.8
Peaxi162Scf00129g00237 Petunia axillaris HOM05D002605 ORTHO05D002842 4.8e-09 65.1 41 70.7
RcHm_v2.0_Chr4g0446951 Rosa chinensis HOM05D002605 ORTHO05D002842 4.8e-09 65.1 42 69.0
Sopen02g004920 Solanum pennellii HOM05D002605 ORTHO05D002842 4.8e-09 65.1 42 69.0
PGSC0003DMG400002618 Solanum tuberosum HOM05D002605 ORTHO05D002842 4.8e-09 65.1 42 69.0
CANSAT01G2762 Cannabis sativa HOM05D002605 ORTHO05D002842 6.3e-09 64.7 42 61.9
Cc00_g09980 Coffea canephora HOM05D002605 ORTHO05D002842 6.3e-09 64.7 42 71.4
Migut.E00681 Erythranthe guttata HOM05D002605 ORTHO05D002842 6.3e-09 64.7 42 69.0
Gohir.A03G166100 Gossypium hirsutum HOM05D002605 ORTHO05D002842 6.3e-09 64.7 42 71.4
Gohir.D02G189500 Gossypium hirsutum HOM05D002605 ORTHO05D002842 6.3e-09 64.7 42 71.4
PSO063G2536 Papaver somniferum HOM05D002605 ORTHO05D002842 6.3e-09 64.7 42 71.4
Prupe.1G349300 Prunus persica HOM05D002605 ORTHO05D002842 6.3e-09 64.7 42 69.0
RcHm_v2.0_Chr1g0365791 Rosa chinensis HOM05D002605 ORTHO05D002842 6.3e-09 64.7 42 69.0
GSVIVG01034414001 Vitis vinifera HOM05D002605 ORTHO05D002842 6.3e-09 64.7 42 73.8
CsaV3_5G020750 Cucumis sativus L. HOM05D002605 ORTHO05D002842 8.2e-09 64.3 39 76.9
Manes.11G001601 Manihot esculenta HOM05D002605 ORTHO05D002842 8.2e-09 64.3 42 71.4
SMO115G0355 Selaginella moellendorffii HOM05D002605 ORTHO05D002842 8.2e-09 64.3 39 71.8
SGA_v2.0_scaffold65G22223 Striga asiatica HOM05D002605 ORTHO05D002842 8.2e-09 64.3 42 71.4
Potri.007G075400 Populus trichocarpa HOM05D002605 ORTHO05D002842 1.1e-08 63.9 42 71.4
Sabra07G0063700 Salix brachista HOM05D002605 ORTHO05D002842 1.1e-08 63.9 42 71.4
AT3G19970 Arabidopsis thaliana HOM05D002605 ORTHO05D002842 1.4e-08 63.5 39 76.9
arahy.Tifrunner.gnm1.ann1.454AC4 Arachis hypogaea HOM05D002605 ORTHO05D002842 1.4e-08 63.5 42 64.3
MSTRG.2069 Avicennia marina HOM05D002605 ORTHO05D002842 1.4e-08 63.5 42 69.0
Glyma.10G286500 Glycine max HOM05D002605 ORTHO05D002842 1.4e-08 63.5 42 64.3
Glyma.20G102600 Glycine max HOM05D002605 ORTHO05D002842 1.4e-08 63.5 42 64.3
Nitab4.5_0001916g0060 Nicotiana tabacum HOM05D002605 ORTHO05D002842 1.4e-08 63.5 41 70.7
Peaxi162Scf00366g00534 Petunia axillaris HOM05D002605 ORTHO05D002842 1.4e-08 63.5 42 66.7
SHI21210 Sapria himalayana HOM05D002605 ORTHO05D002842 1.4e-08 63.5 41 68.3
Cfa008777 Carpinus fangiana HOM05D002605 ORTHO05D002842 1.8e-08 63.2 42 69.0
Oeu006330.1 Olea europaea HOM05D002605 ORTHO05D002842 1.8e-08 63.2 42 66.7
Oeu027931.1 Olea europaea HOM05D002605 ORTHO05D002842 1.8e-08 63.2 42 66.7
PGSC0003DMG400017794 Solanum tuberosum HOM05D002605 ORTHO05D002842 1.8e-08 63.2 42 66.7
AL3G33620 Arabidopsis lyrata HOM05D002605 ORTHO05D002842 2.4e-08 62.8 39 76.9
Carub.0003s1987 Capsella rubella HOM05D002605 ORTHO05D002842 2.4e-08 62.8 39 76.9
CiPaw.05G172200 Carya illinoinensis HOM05D002605 ORTHO05D002842 2.4e-08 62.8 42 71.4
Lalb_Chr06g0163951 Lupinus albus HOM05D002605 ORTHO05D002842 2.4e-08 62.8 42 64.3
MD13G1003100 Malus domestica HOM05D002605 ORTHO05D002842 2.4e-08 62.8 42 66.7
Mapoly0019s0001 Marchantia polymorpha HOM05D002605 ORTHO05D002842 2.4e-08 62.8 41 65.9
Nitab4.5_0000178g0270 Nicotiana tabacum HOM05D002605 ORTHO05D002842 2.4e-08 62.8 39 69.2
CAN.G358.63 Capsicum annuum HOM05D002605 ORTHO05D002842 3.1e-08 62.4 42 64.3
Cpa.g.sc60.93 Carica papaya HOM05D002605 ORTHO05D002842 3.1e-08 62.4 42 69.0
Gorai.005G212200 Gossypium raimondii HOM05D002605 ORTHO05D002842 3.1e-08 62.4 42 69.0
Lj5g0019717 Lotus japonicus HOM05D002605 ORTHO05D002842 3.1e-08 62.4 42 61.9
MBI06_g27488_MAGBIO Magnolia biondii HOM05D002605 ORTHO05D002842 3.1e-08 62.4 39 71.8
Pp3c20_16960 Physcomitrium patens HOM05D002605 ORTHO05D002842 3.1e-08 62.4 39 66.7
Sopen02g029770 Solanum pennellii HOM05D002605 ORTHO05D002842 3.1e-08 62.4 40 65.0
Lj4A203T44 Lonicera japonica HOM05D002605 ORTHO05D002842 4.1e-08 62.0 39 69.2
Pp3c23_5980 Physcomitrium patens HOM05D002605 ORTHO05D002842 4.1e-08 62.0 41 63.4
Sc16g0002650 Simmondsia chinensis HOM05D002605 ORTHO05D002842 4.1e-08 62.0 42 59.5
VMungo0720G0400 Vigna mungo HOM05D002605 ORTHO05D002842 4.1e-08 62.0 42 61.9
Zm00001eb231500 Zea mays HOM05D002605 ORTHO05D002842 4.1e-08 62.0 41 63.4
Ca_11260_v3 Cicer arietinum L. HOM05D002605 ORTHO05D002842 5.3e-08 61.6 42 61.9
Thhalv10020748m.g Eutrema salsugineum HOM05D002605 ORTHO05D002842 5.3e-08 61.6 39 76.9
Pp3c23_11600 Physcomitrium patens HOM05D002605 ORTHO05D002842 5.3e-08 61.6 39 64.1
Zm00001eb271760 Zea mays HOM05D002605 ORTHO05D002842 5.3e-08 61.6 42 69.0
Lj6A713T76 Lonicera japonica HOM05D002605 ORTHO05D002842 7.0e-08 61.2 42 66.7
Lj6C708T13 Lonicera japonica HOM05D002605 ORTHO05D002842 7.0e-08 61.2 42 66.7
TAR625G0131 Trochodendron aralioides HOM05D002605 ORTHO05D002842 7.0e-08 61.2 42 57.1
Eucgr.G02588 Eucalyptus grandis HOM05D002605 ORTHO05D002842 9.1e-08 60.8 42 69.0
Psat6g234120 Pisum sativum HOM05D002605 ORTHO05D002842 9.1e-08 60.8 42 59.5
Aa31LG8G6680 Aethionema arabicum HOM05D002605 ORTHO05D002842 1.2e-07 60.5 39 71.8
BcaB06g26066 Brassica carinata HOM05D002605 ORTHO05D002842 1.2e-07 60.5 39 74.4
BcaC05g28386 Brassica carinata HOM05D002605 ORTHO05D002842 1.2e-07 60.5 39 74.4
A03p41510 Brassica napus HOM05D002605 ORTHO05D002842 1.2e-07 60.5 39 74.4
A05p29140 Brassica napus HOM05D002605 ORTHO05D004431 1.2e-07 60.5 39 74.4
C03p50830 Brassica napus HOM05D002605 ORTHO05D002842 1.2e-07 60.5 39 74.4
C05p44540 Brassica napus HOM05D002605 ORTHO05D004431 1.2e-07 60.5 39 74.4
BolC3t17367H Brassica oleracea HOM05D002605 ORTHO05D002842 1.2e-07 60.5 39 74.4
BolC5t33188H Brassica oleracea HOM05D002605 ORTHO05D002842 1.2e-07 60.5 39 74.4
BraA03t13305Z Brassica rapa HOM05D002605 ORTHO05D002842 1.2e-07 60.5 39 74.4
BraA05t21801Z Brassica rapa HOM05D002605 ORTHO05D002842 1.2e-07 60.5 39 74.4
Hma1.2p1_0789F.1_g218240 Hydrangea macrophylla HOM05D002605 ORTHO05D002842 1.2e-07 60.5 39 66.7
Nitab4.5_0007490g0060 Nicotiana tabacum HOM05D002605 ORTHO05D002842 1.2e-07 60.5 39 66.7
Sp3g17990 Schrenkiella parvula HOM05D002605 ORTHO05D002842 1.2e-07 60.5 39 74.4
PGSC0003DMG400003604 Solanum tuberosum HOM05D002605 ORTHO05D002842 1.2e-07 60.5 40 62.5
CSS0041408 Camellia sinensis var. sinensis HOM05D002605 ORTHO05D002842 1.5e-07 60.1 39 64.1
CARHR095500 Cardamine hirsuta HOM05D002605 ORTHO05D002842 1.5e-07 60.1 39 74.4
DCAR_002606 Daucus carota HOM05D002605 ORTHO05D002842 1.5e-07 60.1 42 64.3
Medtr1g114600 Medicago truncatula HOM05D002605 ORTHO05D002842 1.5e-07 60.1 42 59.5
vmacro17821 Vaccinium macrocarpon HOM05D002605 ORTHO05D002842 1.5e-07 60.1 39 64.1
AagrBONN_evm.TU.Sc2ySwM_117.2345 Anthoceros agrestis HOM05D002605 ORTHO05D002842 2.0e-07 59.7 39 66.7
THA.LOC104801595 Tarenaya hassleriana HOM05D002605 ORTHO05D002842 2.0e-07 59.7 40 70.0
unitig_736.g22550 Utricularia gibba HOM05D000472 ORTHO05D000344 2.0e-07 59.7 40 60.0
AUR62004072 Chenopodium quinoa HOM05D002605 ORTHO05D002842 2.6e-07 59.3 39 64.1
AUR62007585 Chenopodium quinoa HOM05D002605 ORTHO05D002842 2.6e-07 59.3 39 64.1
Rhsim08G0118700 Rhododendron simsii HOM05D002605 ORTHO05D002842 2.6e-07 59.3 39 64.1
SalBow1G7718 Salvia bowleyana HOM05D002605 ORTHO05D002842 2.6e-07 59.3 41 58.5
TPR.G4049 Trifolium pratense HOM05D002605 ORTHO05D002842 2.6e-07 59.3 38 65.8
CDE05G3560 Ceratophyllum demersum HOM05D002605 ORTHO05D002842 3.4e-07 58.9 42 64.3
Phvul.007G014300 Phaseolus vulgaris HOM05D002605 ORTHO05D002842 3.4e-07 58.9 42 59.5
QL06p046608 Quercus lobata HOM05D002605 ORTHO05D002842 3.4e-07 58.9 39 64.1
DCAR_030357 Daucus carota HOM05D002605 ORTHO05D002842 4.5e-07 58.5 42 64.3
Lsat_1_v5_gn_3_34501 Lactuca sativa HOM05D002605 ORTHO05D002842 4.5e-07 58.5 38 71.1
HPP92_004904 Vanilla planifolia HOM05D002605 ORTHO05D002842 4.5e-07 58.5 41 58.5
Actinidia08345 Actinidia chinensis HOM05D002605 ORTHO05D002842 5.9e-07 58.2 39 64.1
TWI09G1608 Tripterygium wilfordii HOM05D002605 ORTHO05D002842 5.9e-07 58.2 42 59.5
MSTRG.23510 Avicennia marina HOM05D002605 ORTHO05D002842 7.7e-07 57.8 39 59.0
Solyc02g085080.4 Solanum lycopersicum HOM05D002605 ORTHO05D002842 7.7e-07 57.8 40 62.5
unitig_749.g13341 Utricularia gibba HOM05D002605 ORTHO05D002842 7.7e-07 57.8 39 64.1
Oeu023819.1 Olea europaea HOM05D002605 ORTHO05D002842 1.0e-06 57.4 38 60.5
PSO731G0123 Papaver somniferum HOM05D002605 ORTHO05D002842 1.3e-06 57.0 42 59.5
ATR0568G069 Amborella trichopoda HOM05D002605 ORTHO05D002842 1.7e-06 56.6 42 57.1
Cpa.g.sc6.138 Carica papaya HOM05D002605 ORTHO05D002842 1.7e-06 56.6 39 59.0
Eucgr.I02424 Eucalyptus grandis HOM05D002605 ORTHO05D002842 1.7e-06 56.6 38 65.8
Cfa004330 Carpinus fangiana HOM05D002605 ORTHO05D002842 2.2e-06 56.2 39 61.5
Haze_15076 Corylus avellana HOM05D002605 ORTHO05D002842 2.2e-06 56.2 39 61.5
HanXRQChr17g0541061 Helianthus annuus HOM05D002605 ORTHO05D002842 2.2e-06 56.2 38 68.4
HPP92_021822 Vanilla planifolia HOM05D002605 ORTHO05D002842 2.2e-06 56.2 41 58.5
arahy.Tifrunner.gnm1.ann1.4YR43N Arachis hypogaea HOM05D002605 ORTHO05D002842 2.9e-06 55.8 35 62.9
Cc07_g09730 Coffea canephora HOM05D002605 ORTHO05D002842 2.9e-06 55.8 41 51.2
DCAR_025952 Daucus carota HOM05D002605 ORTHO05D002842 2.9e-06 55.8 41 56.1
ECA246G5028 Erigeron canadensis HOM05D002605 ORTHO05D002842 2.9e-06 55.8 34 73.5
HanXRQChr06g0171701 Helianthus annuus HOM05D002605 ORTHO05D002842 2.9e-06 55.8 38 68.4
Lalb_Chr09g0333441 Lupinus albus HOM05D002605 ORTHO05D002842 2.9e-06 55.8 36 63.9
FvH4_1g13010 Fragaria vesca HOM05D002605 ORTHO05D002842 3.8e-06 55.5 41 56.1
FAN23G0209 Fragaria x ananassa HOM05D002605 ORTHO05D002842 3.8e-06 55.5 41 56.1
Lj3C846T17 Lonicera japonica HOM05D002605 ORTHO05D002842 3.8e-06 55.5 42 59.5
SMO142G0067 Selaginella moellendorffii HOM05D002605 ORTHO05D002842 3.8e-06 55.5 40 60.0
TPR.G2372 Trifolium pratense HOM05D002605 ORTHO05D002842 3.8e-06 55.5 36 61.1
Ca_24866_v3 Cicer arietinum L. HOM05D002605 ORTHO05D002842 5.0e-06 55.1 36 63.9
HanXRQChr09g0261351 Helianthus annuus HOM05D002605 ORTHO05D002842 5.0e-06 55.1 39 56.4
Manes.01G136900 Manihot esculenta HOM05D002605 ORTHO05D002842 5.0e-06 55.1 42 52.4
PSO764G0346 Papaver somniferum HOM05D002605 ORTHO05D002842 5.0e-06 55.1 42 59.5
Psat2g158320 Pisum sativum HOM05D002605 ORTHO05D002842 5.0e-06 55.1 35 62.9
THA.LOC104807844 Tarenaya hassleriana HOM05D002605 ORTHO05D002842 5.0e-06 55.1 39 56.4
Atru.chr3.609 Acer truncatum HOM05D002605 ORTHO05D002842 6.5e-06 54.7 37 59.5
arahy.Tifrunner.gnm1.ann1.XP1AI4 Arachis hypogaea HOM05D002605 ORTHO05D002842 6.5e-06 54.7 35 60.0
Migut.H00961 Erythranthe guttata HOM05D002605 ORTHO05D002842 6.5e-06 54.7 38 60.5
MD15G1258300 Malus domestica HOM05D002605 ORTHO05D002842 8.5e-06 54.3 41 51.2


User provided reference genes

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