Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05489 Nelumbo nucifera HOM05D000844 ORTHO05D000680 9.1e-47 189.9 95 100.0
Nn8g38741 Nelumbo nucifera HOM05D000844 ORTHO05D000680 7.0e-31 137.1 96 79.2
Nn6g35574 Nelumbo nucifera HOM05D000844 ORTHO05D000680 7.5e-25 117.1 96 66.7
Nn3g19424 Nelumbo nucifera HOM05D000844 ORTHO05D000680 4.8e-24 114.4 95 64.2
Nn1g05587 Nelumbo nucifera HOM05D000844 ORTHO05D000680 2.4e-23 112.1 96 63.5
QL02p061264 Quercus lobata HOM05D000844 ORTHO05D000680 5.9e-22 107.5 95 67.4
QL02p061377 Quercus lobata HOM05D000844 ORTHO05D000680 5.9e-22 107.5 95 67.4
Cfa003037 Carpinus fangiana HOM05D000844 ORTHO05D000680 1.7e-21 105.9 95 66.3
Cfa003039 Carpinus fangiana HOM05D000844 ORTHO05D000680 1.7e-21 105.9 95 66.3
Nn7g37758 Nelumbo nucifera HOM05D000844 ORTHO05D000680 1.7e-21 105.9 90 70.0
Nn3g20362 Nelumbo nucifera HOM05D000844 ORTHO05D000680 2.9e-21 105.1 96 60.4
TAR624G1211 Trochodendron aralioides HOM05D000844 ORTHO05D000680 2.9e-21 105.1 96 67.7
Cfa003036 Carpinus fangiana HOM05D000844 ORTHO05D000680 3.8e-21 104.8 95 65.3
Haze_25962 Corylus avellana HOM05D000844 ORTHO05D000680 5.0e-21 104.4 95 65.3
CDE06G2597 Ceratophyllum demersum HOM05D000844 ORTHO05D000680 8.5e-21 103.6 96 64.6
CDE07G1529 Ceratophyllum demersum HOM05D000844 ORTHO05D000680 1.9e-20 102.4 96 63.5
CiPaw.04G146100 Carya illinoinensis HOM05D000844 ORTHO05D000680 3.2e-20 101.7 95 65.3
CDE06G0737 Ceratophyllum demersum HOM05D000844 ORTHO05D000680 3.2e-20 101.7 94 64.9
CiPaw.04G145900 Carya illinoinensis HOM05D000844 ORTHO05D000680 5.5e-20 100.9 95 65.3
CiPaw.04G146000 Carya illinoinensis HOM05D000844 ORTHO05D000680 5.5e-20 100.9 95 65.3
PSO421G0737 Papaver somniferum HOM05D000844 ORTHO05D000680 4.7e-19 97.8 100 62.0
PSO063G0499 Papaver somniferum HOM05D000844 ORTHO05D000680 6.1e-19 97.4 100 62.0
Manes.16G098200 Manihot esculenta HOM05D000844 ORTHO05D000680 1.4e-18 96.3 95 58.9
MBI19_g19953_MAGBIO Magnolia biondii HOM05D000844 ORTHO05D000680 4.0e-18 94.7 97 56.7
GSVIVG01015124001 Vitis vinifera HOM05D000844 ORTHO05D000680 8.8e-18 93.6 96 58.3
GSVIVG01015138001 Vitis vinifera HOM05D000844 ORTHO05D000680 8.8e-18 93.6 96 57.3
Duzib168G1200 Durio zibethinus HOM05D000844 ORTHO05D000680 1.5e-17 92.8 95 58.9
GSVIVG01015140001 Vitis vinifera HOM05D000844 ORTHO05D000680 2.6e-17 92.0 95 58.9
ATR0598G039 Amborella trichopoda HOM05D000844 ORTHO05D000680 3.4e-17 91.7 97 55.7
Eucgr.C03570 Eucalyptus grandis HOM05D000844 ORTHO05D000680 3.4e-17 91.7 95 58.9
ATR0598G058 Amborella trichopoda HOM05D000844 ORTHO05D000680 4.4e-17 91.3 97 57.7
Gohir.A06G074800 Gossypium hirsutum HOM05D000844 ORTHO05D000680 2.8e-16 88.6 94 56.4
PSO063G6937 Papaver somniferum HOM05D000844 ORTHO05D000680 3.7e-16 88.2 100 57.0
Gorai.010G086000 Gossypium raimondii HOM05D000844 ORTHO05D000680 4.8e-16 87.8 95 55.8
ATR0598G114 Amborella trichopoda HOM05D000844 ORTHO05D000680 8.3e-16 87.0 97 57.7
Gohir.D06G073600 Gossypium hirsutum HOM05D000844 ORTHO05D000680 1.1e-15 86.7 95 55.8
SEGI_18771 Sequoiadendron giganteum HOM05D000844 ORTHO05D000680 2.4e-15 85.5 96 53.1
Sed0026887 Sechium edule HOM05D000844 ORTHO05D000680 1.0e-13 80.1 97 48.5
MELO3C015503.2 Cucumis melo HOM05D000844 ORTHO05D000680 5.0e-13 77.8 96 51.0
CsaV3_1G040750 Cucumis sativus L. HOM05D000844 ORTHO05D000680 6.5e-13 77.4 96 51.0
COL.COLO4_18142 Corchorus olitorius HOM05D000844 ORTHO05D000680 1.5e-12 76.3 94 52.1
AagrBONN_evm.TU.Sc2ySwM_228.5205 Anthoceros agrestis HOM05D000844 ORTHO05D000680 7.5e-09 63.9 88 44.3
SEGI_12427 Sequoiadendron giganteum HOM05D000844 ORTHO05D000680 1.3e-08 63.2 96 42.7
AagrBONN_evm.TU.Sc2ySwM_228.725 Anthoceros agrestis HOM05D000844 ORTHO05D000680 3.7e-08 61.6 96 44.8
Sed0013151 Sechium edule HOM05D000844 ORTHO05D000680 3.7e-08 61.6 82 43.9
Gohir.D11G343500 Gossypium hirsutum HOM05D000844 ORTHO05D000680 4.9e-08 61.2 82 42.7
Gorai.007G373600 Gossypium raimondii HOM05D000844 ORTHO05D000680 4.9e-08 61.2 82 42.7
Gorai.007G373700 Gossypium raimondii HOM05D000844 ORTHO05D000680 4.9e-08 61.2 82 42.7
Pp3c13_12190 Physcomitrium patens HOM05D000844 ORTHO05D000680 8.3e-08 60.5 88 38.6
Cfa001659 Carpinus fangiana HOM05D000844 ORTHO05D000680 1.1e-07 60.1 82 42.7
ECA233G6263 Erigeron canadensis HOM05D000844 ORTHO05D000680 1.4e-07 59.7 96 39.6
Eucgr.G02850 Eucalyptus grandis HOM05D000844 ORTHO05D000680 1.4e-07 59.7 82 39.0
Eucgr.G02851 Eucalyptus grandis HOM05D000844 ORTHO05D000680 1.4e-07 59.7 82 39.0
Gohir.A11G324340 Gossypium hirsutum HOM05D000844 ORTHO05D000680 1.4e-07 59.7 82 41.5
Gorai.009G416400 Gossypium raimondii HOM05D000844 ORTHO05D000680 1.4e-07 59.7 82 39.0
PSO339G2188 Papaver somniferum HOM05D000844 ORTHO05D000680 1.4e-07 59.7 96 40.6
PSO801G0780 Papaver somniferum HOM05D000844 ORTHO05D000680 1.8e-07 59.3 96 40.6
Eucgr.G02849 Eucalyptus grandis HOM05D000844 ORTHO05D000680 2.4e-07 58.9 82 39.0
Prupe.6G235400 Prunus persica HOM05D000844 ORTHO05D000680 3.1e-07 58.5 82 41.5
Migut.F01977 Erythranthe guttata HOM05D000844 ORTHO05D000680 4.1e-07 58.2 82 42.7
HanXRQChr02g0053471 Helianthus annuus HOM05D000844 ORTHO05D000680 4.1e-07 58.2 96 38.5
Sabra08G0025700 Salix brachista HOM05D000844 ORTHO05D000680 4.1e-07 58.2 82 39.0
MD04G1096200 Malus domestica HOM05D000844 ORTHO05D000680 5.4e-07 57.8 82 41.5
Pp3c10_21810 Physcomitrium patens HOM05D000844 ORTHO05D000680 5.4e-07 57.8 96 38.5
Pp3c13_9000 Physcomitrium patens HOM05D000844 ORTHO05D000680 5.4e-07 57.8 96 38.5
Pp3c21_7640 Physcomitrium patens HOM05D000844 ORTHO05D000680 5.4e-07 57.8 96 38.5
Pp3c21_7670 Physcomitrium patens HOM05D000844 ORTHO05D000680 5.4e-07 57.8 96 38.5
Pp3c21_7680 Physcomitrium patens HOM05D000844 ORTHO05D000680 5.4e-07 57.8 96 38.5
Pp3c24_13110 Physcomitrium patens HOM05D000844 ORTHO05D000680 5.4e-07 57.8 96 38.5
Pp3c2_32410 Physcomitrium patens HOM05D000844 ORTHO05D000680 5.4e-07 57.8 96 38.5
Eucgr.G02848 Eucalyptus grandis HOM05D000844 ORTHO05D000680 7.0e-07 57.4 82 37.8
Pp3c2_30610 Physcomitrium patens HOM05D000844 ORTHO05D000680 7.0e-07 57.4 96 38.5
Phvul.007G096300 Phaseolus vulgaris HOM05D000844 ORTHO05D000680 9.2e-07 57.0 82 39.0
Pp3c14_11870 Physcomitrium patens HOM05D000844 ORTHO05D000680 9.2e-07 57.0 96 39.6
Sabra08G0025800 Salix brachista HOM05D000844 ORTHO05D000680 9.2e-07 57.0 96 37.5
Sabra08G0025900 Salix brachista HOM05D000844 ORTHO05D000680 9.2e-07 57.0 82 39.0
Sed0003527 Sechium edule HOM05D000844 ORTHO05D000680 9.2e-07 57.0 82 37.8
Sed0018797 Sechium edule HOM05D000844 ORTHO05D000680 9.2e-07 57.0 82 36.6
vmacro08771 Vaccinium macrocarpon HOM05D000844 ORTHO05D000680 9.2e-07 57.0 96 41.7
CSS0018870 Camellia sinensis var. sinensis HOM05D000844 ORTHO05D000680 1.2e-06 56.6 82 41.5
CSS0021474 Camellia sinensis var. sinensis HOM05D000844 ORTHO05D000680 1.2e-06 56.6 82 41.5
Haze_16875 Corylus avellana HOM05D000844 ORTHO05D000680 1.2e-06 56.6 81 40.7
MD12G1116700 Malus domestica HOM05D000844 ORTHO05D000680 1.2e-06 56.6 82 40.2
SEGI_38051 Sequoiadendron giganteum HOM05D000844 ORTHO05D000680 1.2e-06 56.6 91 38.5
Cpa.g.sc390.3 Carica papaya HOM05D000844 ORTHO05D000680 1.6e-06 56.2 88 39.8
Cpa.g.sc92.120 Carica papaya HOM05D000844 ORTHO05D000680 1.6e-06 56.2 88 39.8
CsaV3_6G039680 Cucumis sativus L. HOM05D000844 ORTHO05D000680 1.6e-06 56.2 82 39.0
Dinv35765 Davidia involucrata HOM05D000844 ORTHO05D000680 1.6e-06 56.2 82 40.2
Gohir.D04G112140 Gossypium hirsutum HOM05D000844 ORTHO05D000680 1.6e-06 56.2 82 39.0
Gorai.009G416300 Gossypium raimondii HOM05D000844 ORTHO05D000680 1.6e-06 56.2 82 39.0
MBI03_g42616_MAGBIO Magnolia biondii HOM05D000844 ORTHO05D000680 1.6e-06 56.2 94 42.6
Oeu045213.2 Olea europaea HOM05D000844 ORTHO05D000680 1.6e-06 56.2 82 40.2
THA.LOC104806492 Tarenaya hassleriana HOM05D000844 ORTHO05D000680 1.6e-06 56.2 82 37.8
CANSAT80G0523 Cannabis sativa HOM05D000844 ORTHO05D000680 2.0e-06 55.8 70 40.0
FAN10G2959 Fragaria x ananassa HOM05D000844 ORTHO05D000680 2.0e-06 55.8 82 41.5
HanXRQChr07g0195401 Helianthus annuus HOM05D000844 ORTHO05D000680 2.0e-06 55.8 82 40.2
Hma1.2p1_1458F.1_g284720 Hydrangea macrophylla HOM05D000844 ORTHO05D000680 2.0e-06 55.8 82 39.0
Pp3c19_13690 Physcomitrium patens HOM05D000844 ORTHO05D000680 2.0e-06 55.8 96 37.5
Psat3g023040 Pisum sativum HOM05D000844 ORTHO05D000680 2.0e-06 55.8 82 40.2
Psat3g023120 Pisum sativum HOM05D000844 ORTHO05D000680 2.0e-06 55.8 82 40.2
Psat3g072160 Pisum sativum HOM05D000844 ORTHO05D000680 2.0e-06 55.8 71 43.7
Ca_08848_v3 Cicer arietinum L. HOM05D000844 ORTHO05D000680 2.7e-06 55.5 71 43.7
Ciclev10011134m.g Citrus clementina HOM05D000844 ORTHO05D000680 2.7e-06 55.5 96 37.5
FAN10G2818 Fragaria x ananassa HOM05D000844 ORTHO05D000680 2.7e-06 55.5 82 41.5
Lsat_1_v5_gn_2_106520 Lactuca sativa HOM05D000844 ORTHO05D000680 2.7e-06 55.5 96 37.5
Psat0s4534g0080 Pisum sativum HOM05D000844 ORTHO05D000680 2.7e-06 55.5 71 43.7
Psat3g040960 Pisum sativum HOM05D000844 ORTHO05D000680 2.7e-06 55.5 71 43.7
Prupe.2G211800 Prunus persica HOM05D000844 ORTHO05D000680 2.7e-06 55.5 82 39.0
Ah.15g092440 Amaranthus hybridus HOM05D000844 ORTHO05D000680 3.5e-06 55.1 97 41.2
BcaB02g08531 Brassica carinata HOM05D000844 ORTHO05D000680 3.5e-06 55.1 88 37.5
Haze_16876 Corylus avellana HOM05D000844 ORTHO05D000680 3.5e-06 55.1 82 40.2
Eucgr.A01144 Eucalyptus grandis HOM05D000844 ORTHO05D000680 3.5e-06 55.1 82 37.8
FAN01G2698 Fragaria x ananassa HOM05D000844 ORTHO05D000680 3.5e-06 55.1 82 41.5
FAN03G3379 Fragaria x ananassa HOM05D000844 ORTHO05D000680 3.5e-06 55.1 82 41.5
Gohir.A04G073300 Gossypium hirsutum HOM05D000844 ORTHO05D000680 3.5e-06 55.1 82 39.0
Gohir.D01G203300 Gossypium hirsutum HOM05D000844 ORTHO05D000680 3.5e-06 55.1 82 37.8
Gohir.D04G112180 Gossypium hirsutum HOM05D000844 ORTHO05D000680 3.5e-06 55.1 82 35.4
Gorai.002G248000 Gossypium raimondii HOM05D000844 ORTHO05D000680 3.5e-06 55.1 82 37.8
Oeu036623.1 Olea europaea HOM05D000844 ORTHO05D000680 3.5e-06 55.1 82 40.2
Psat1g046920 Pisum sativum HOM05D000844 ORTHO05D000680 3.5e-06 55.1 71 43.7
Psat3g041080 Pisum sativum HOM05D000844 ORTHO05D000680 3.5e-06 55.1 71 43.7
Potri.010G224100 Populus trichocarpa HOM05D000844 ORTHO05D000680 3.5e-06 55.1 88 39.8
Rhsim03G0119100 Rhododendron simsii HOM05D000844 ORTHO05D000680 3.5e-06 55.1 96 37.5
Rhsim13G0096300 Rhododendron simsii HOM05D000844 ORTHO05D000680 3.5e-06 55.1 71 42.3
Dinv36424 Davidia involucrata HOM05D000844 ORTHO05D000680 4.5e-06 54.7 92 35.9
Dinv37297 Davidia involucrata HOM05D001144 ORTHO05D003139 4.5e-06 54.7 82 39.0
ECA236G2838 Erigeron canadensis HOM05D000844 ORTHO05D000680 4.5e-06 54.7 88 40.9
ECA238G3831 Erigeron canadensis HOM05D000844 ORTHO05D000680 4.5e-06 54.7 82 40.2
Lalb_Chr25g0289081 Lupinus albus HOM05D000844 ORTHO05D000680 4.5e-06 54.7 82 39.0
QL07p044165 Quercus lobata HOM05D000844 ORTHO05D000680 4.5e-06 54.7 82 40.2
QL08p055354 Quercus lobata HOM05D000844 ORTHO05D000680 4.5e-06 54.7 82 39.0
QL93p2013_0042 Quercus lobata HOM05D000844 ORTHO05D000680 4.5e-06 54.7 82 40.2
QL93p2013_0048 Quercus lobata HOM05D000844 ORTHO05D000680 4.5e-06 54.7 82 40.2
THA.LOC104805263 Tarenaya hassleriana HOM05D000844 ORTHO05D000680 4.5e-06 54.7 72 41.7
TPR.G16058 Trifolium pratense HOM05D000844 ORTHO05D000680 4.5e-06 54.7 88 40.9
CSS0034802 Camellia sinensis var. sinensis HOM05D000844 ORTHO05D000680 5.9e-06 54.3 82 37.8
CANSAT56G4207 Cannabis sativa HOM05D000844 ORTHO05D000680 5.9e-06 54.3 96 35.4
COL.COLO4_26994 Corchorus olitorius HOM05D000844 ORTHO05D000680 5.9e-06 54.3 82 37.8
Duzib093G1956 Durio zibethinus HOM05D000844 ORTHO05D000680 5.9e-06 54.3 82 37.8
Duzib106G1669 Durio zibethinus HOM05D000844 ORTHO05D000680 5.9e-06 54.3 82 37.8
Gohir.A01G214800 Gossypium hirsutum HOM05D000844 ORTHO05D000680 5.9e-06 54.3 82 37.8
HanXRQChr09g0246871 Helianthus annuus HOM05D000844 ORTHO05D000680 5.9e-06 54.3 88 37.5
Hma1.2p1_0307F.1_g119900 Hydrangea macrophylla HOM05D000844 ORTHO05D000680 5.9e-06 54.3 82 39.0
Lj5g0017962 Lotus japonicus HOM05D000844 ORTHO05D000680 5.9e-06 54.3 82 39.0
QL07p044148 Quercus lobata HOM05D000844 ORTHO05D000680 5.9e-06 54.3 82 40.2
Sed0023091 Sechium edule HOM05D000844 ORTHO05D000680 5.9e-06 54.3 74 41.9
Thecc.09G343800 Theobroma cacao HOM05D000844 ORTHO05D000680 5.9e-06 54.3 74 43.2
unitig_749.g14273 Utricularia gibba HOM05D000844 ORTHO05D000680 5.9e-06 54.3 82 39.0
VMungo0720G2073 Vigna mungo HOM05D000844 ORTHO05D000680 5.9e-06 54.3 82 37.8
CSS0010367 Camellia sinensis var. sinensis HOM05D000844 ORTHO05D000680 7.8e-06 53.9 82 37.8
CANSAT80G0924 Cannabis sativa HOM05D000844 ORTHO05D000680 7.8e-06 53.9 82 39.0
Cc02_g11230 Coffea canephora HOM05D000844 ORTHO05D000680 7.8e-06 53.9 88 38.6
Dinv32720 Davidia involucrata HOM05D000844 ORTHO05D000680 7.8e-06 53.9 82 39.0
FvH4_7g19130 Fragaria vesca HOM05D000844 ORTHO05D000680 7.8e-06 53.9 82 40.2
FAN06G1111 Fragaria x ananassa HOM05D000844 ORTHO05D000680 7.8e-06 53.9 82 40.2
FAN06G2093 Fragaria x ananassa HOM05D000844 ORTHO05D000680 7.8e-06 53.9 82 40.2
Potri.010G224200 Populus trichocarpa HOM05D000844 ORTHO05D000680 7.8e-06 53.9 82 37.8
Sabra16G0096400 Salix brachista HOM05D000844 ORTHO05D000680 7.8e-06 53.9 96 37.5


User provided reference genes

Program Settings