Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000844', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '707', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A04p06200' => 'bna', 'A04p15880' => 'bna', 'A04p28310' => 'bna', 'A05p08780' => 'bna', 'A05p38810' => 'bna', 'A07p21490' => 'bna', 'A09p46290' => 'bna', 'Aa31LG3G2910' => 'aar', 'Aa31LG5G22310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4622' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5205' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.725' => 'aag', 'Actinidia06760' => 'ach', 'Actinidia07153' => 'ach', 'Actinidia13078' => 'ach', 'Actinidia22446' => 'ach', 'Actinidia24116' => 'ach', 'Actinidia31339' => 'ach', 'Actinidia31340' => 'ach', 'Actinidia32439' => 'ach', 'Actinidia32440' => 'ach', 'Actinidia32441' => 'ach', 'Ah.15g092440' => 'amhyb', 'AL3G21670' => 'aly', 'AL4G33370' => 'aly', 'AL5G34170' => 'aly', 'AL6G13850' => 'aly', 'Aqoxy1G01205' => 'aox', 'Aqoxy2G01818' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0B4MFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5H4H17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9CK4GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EEZ4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI9C9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Z3VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB2RRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PUMP6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2YH27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULT2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1SQAY' => 'arhy', 'AT2G37040' => 'ath', 'AT3G10340' => 'ath', 'AT3G53260' => 'ath', 'AT5G04230' => 'ath', 'ATR0048G051' => 'atr', 'ATR0598G039' => 'atr', 'ATR0598G058' => 'atr', 'ATR0598G114' => 'atr', 'ATR0763G117' => 'atr', 'Atru.chr12.710' => 'acertr', 'Atru.chr3.3599' => 'acertr', 'Atru.chr7.1656' => 'acertr', 'Atru.chr8.1402' => 'acertr', 'AUR62039879' => 'cqu', 'AUR62040467' => 'cqu', 'BcaB01g00295' => 'bca', 'BcaB01g03796' => 'bca', 'BcaB01g03798' => 'bca', 'BcaB02g07797' => 'bca', 'BcaB02g08531' => 'bca', 'BcaB02g09307' => 'bca', 'BcaB05g21767' => 'bca', 'BcaB05g21768' => 'bca', 'BcaB06g28973' => 'bca', 'BcaC02g07551' => 'bca', 'BcaC02g07552' => 'bca', 'BcaC02g07553' => 'bca', 'BcaC02g07556' => 'bca', 'BcaC02g09174' => 'bca', 'BcaC02g09175' => 'bca', 'BcaC02g11831' => 'bca', 'BcaC02g12836' => 'bca', 'BcaC03g12950' => 'bca', 'BcaC05g29476' => 'bca', 'BcaC07g39687' => 'bca', 'BcaC07g39688' => 'bca', 'BcaC07g39689' => 'bca', 'BcaNung04594' => 'bca', 'BcaNung06565' => 'bca', 'BolC2t06142H' => 'bol', 'BolC4t22683H' => 'bol', 'BolC4t25500H' => 'bol', 'BolC4t25539H' => 'bol', 'BolC4t26629H' => 'bol', 'BolC4t28059H' => 'bol', 'BolC5t34439H' => 'bol', 'BolC6t37294H' => 'bol', 'BolC8t50456H' => 'bol', 'BraA02t04805Z' => 'bra', 'BraA04t16324Z' => 'bra', 'BraA04t17217Z' => 'bra', 'BraA04t17220Z' => 'bra', 'BraA04t17221Z' => 'bra', 'BraA04t18313Z' => 'bra', 'BraA05t19846Z' => 'bra', 'BraA05t22672Z' => 'bra', 'BraA07t29836Z' => 'bra', 'BraA09t40092Z' => 'bra', 'C02p01850' => 'bna', 'C04p10910' => 'bna', 'C04p39320' => 'bna', 'C04p39330' => 'bna', 'C04p39690' => 'bna', 'C04p39700' => 'bna', 'C04p50310' => 'bna', 'C04p65660' => 'bna', 'C05p57840' => 'bna', 'C06p21090' => 'bna', 'C08p28490' => 'bna', 'CAN.G3578.1' => 'can', 'CAN.G363.12' => 'can', 'CAN.G363.13' => 'can', 'CAN.G363.14' => 'can', 'CAN.G363.7' => 'can', 'CAN.G363.8' => 'can', 'CAN.G509.12' => 'can', 'CAN.G694.92' => 'can', 'CAN.G806.3' => 'can', 'CANSAT56G4207' => 'cansat', 'CANSAT80G0523' => 'cansat', 'CANSAT80G0733' => 'cansat', 'CANSAT80G0924' => 'cansat', 'CANSAT80G1719' => 'cansat', 'CANSAT80G1948' => 'cansat', 'CANSAT80G2016' => 'cansat', 'CARHR084820' => 'chi', 'CARHR131540' => 'chi', 'CARHR289320' => 'chi', 'Carub.0003s0952' => 'cru', 'Carub.0004s1892' => 'cru', 'Carub.0005s1980' => 'cru', 'Ca_06487_v3' => 'car', 'Ca_08848_v3' => 'car', 'Ca_10557_v3' => 'car', 'Ca_11483_v3' => 'car', 'Ca_29940_v3' => 'car', 'CBR_g34530' => 'cbr', 'CBR_g57646' => 'cbr', 'Cc00_g20750' => 'ccan', 'Cc01_g10880' => 'ccan', 'Cc02_g11230' => 'ccan', 'Cc06_g03980' => 'ccan', 'CDE03G0013' => 'cde', 'CDE03G0030' => 'cde', 'CDE03G0232' => 'cde', 'CDE04G0744' => 'cde', 'CDE04G2639' => 'cde', 'CDE04G3431' => 'cde', 'CDE04G3557' => 'cde', 'CDE05G0703' => 'cde', 'CDE05G2606' => 'cde', 'CDE06G0268' => 'cde', 'CDE06G0737' => 'cde', 'CDE06G2597' => 'cde', 'CDE07G0082' => 'cde', 'CDE07G0918' => 'cde', 'CDE07G1529' => 'cde', 'CDE07G1531' => 'cde', 'Cfa001659' => 'cfa', 'Cfa001660' => 'cfa', 'Cfa003036' => 'cfa', 'Cfa003037' => 'cfa', 'Cfa003039' => 'cfa', 'Cfa017574' => 'cfa', 'Ciclev10010874m.g' => 'ccl', 'Ciclev10011134m.g' => 'ccl', 'Ciclev10011175m.g' => 'ccl', 'Ciclev10027912m.g' => 'ccl', 'Ciclev10027913m.g' => 'ccl', 'Ciclev10029946m.g' => 'ccl', 'Ciclev10030821m.g' => 'ccl', 'CiPaw.01G271300' => 'cil', 'CiPaw.02G173200' => 'cil', 'CiPaw.04G145900' => 'cil', 'CiPaw.04G146000' => 'cil', 'CiPaw.04G146100' => 'cil', 'CiPaw.09G174400' => 'cil', 'COL.COLO4_18142' => 'col', 'COL.COLO4_21739' => 'col', 'COL.COLO4_26994' => 'col', 'COL.COLO4_36662' => 'col', 'Cpa.g.c40737' => 'cpa', 'Cpa.g.sc2443.2' => 'cpa', 'Cpa.g.sc311.1' => 'cpa', 'Cpa.g.sc390.3' => 'cpa', 'Cpa.g.sc92.120' => 'cpa', 'CsaV3_1G040750' => 'csa', 'CsaV3_4G002290' => 'csa', 'CsaV3_4G002300' => 'csa', 'CsaV3_4G002310' => 'csa', 'CsaV3_4G002320' => 'csa', 'CsaV3_4G002330' => 'csa', 'CsaV3_6G014060' => 'csa', 'CsaV3_6G036550' => 'csa', 'CsaV3_6G039660' => 'csa', 'CsaV3_6G039670' => 'csa', 'CsaV3_6G039680' => 'csa', 'CsaV3_6G039690' => 'csa', 'CsaV3_6G039700' => 'csa', 'CsaV3_6G039710' => 'csa', 'CsaV3_6G039720' => 'csa', 'CSS0001442' => 'camsi', 'CSS0010367' => 'camsi', 'CSS0018870' => 'camsi', 'CSS0021474' => 'camsi', 'CSS0034802' => 'camsi', 'CSS0041448' => 'camsi', 'CSS0048281' => 'camsi', 'DCAR_014989' => 'dca', 'DCAR_017697' => 'dca', 'DCAR_020833' => 'dca', 'Dinv25385' => 'din', 'Dinv31309' => 'din', 'Dinv31310' => 'din', 'Dinv32720' => 'din', 'Dinv35765' => 'din', 'Dinv36424' => 'din', 'Dinv37296' => 'din', 'Dinv42363' => 'din', 'Duzib093G1956' => 'dzi', 'Duzib106G1669' => 'dzi', 'Duzib106G1705' => 'dzi', 'Duzib114G1045' => 'dzi', 'Duzib128G0518' => 'dzi', 'Duzib128G1271' => 'dzi', 'Duzib168G1200' => 'dzi', 'Duzib168G1693' => 'dzi', 'ECA232G3724' => 'eca', 'ECA233G3222' => 'eca', 'ECA233G6263' => 'eca', 'ECA236G2838' => 'eca', 'ECA238G0266' => 'eca', 'ECA238G0276' => 'eca', 'ECA238G0836' => 'eca', 'ECA238G3831' => 'eca', 'EL10Ac7g16597' => 'bvu', 'Eucgr.A01144' => 'egr', 'Eucgr.C03570' => 'egr', 'Eucgr.G02848' => 'egr', 'Eucgr.G02849' => 'egr', 'Eucgr.G02850' => 'egr', 'Eucgr.G02851' => 'egr', 'Eucgr.G02852' => 'egr', 'Eucgr.J00907' => 'egr', 'Eucgr.J01079' => 'egr', 'FAN01G2698' => 'fan', 'FAN02G0949' => 'fan', 'FAN03G3379' => 'fan', 'FAN06G1111' => 'fan', 'FAN06G2093' => 'fan', 'FAN09G1337' => 'fan', 'FAN10G2818' => 'fan', 'FAN10G2959' => 'fan', 'FAN14G2582' => 'fan', 'FvH4_6g16060' => 'fve', 'FvH4_7g19130' => 'fve', 'Glyma.02G309300' => 'gma', 'Glyma.03G181600' => 'gma', 'Glyma.03G181700' => 'gma', 'Glyma.10G058200' => 'gma', 'Glyma.10G209800' => 'gma', 'Glyma.13G145000' => 'gma', 'Glyma.19G182300' => 'gma', 'Glyma.20G180800' => 'gma', 'Gohir.A01G214800' => 'ghi', 'Gohir.A04G073300' => 'ghi', 'Gohir.A04G073400' => 'ghi', 'Gohir.A06G074800' => 'ghi', 'Gohir.A09G148900' => 'ghi', 'Gohir.A10G204700' => 'ghi', 'Gohir.A11G324340' => 'ghi', 'Gohir.D01G203300' => 'ghi', 'Gohir.D04G112140' => 'ghi', 'Gohir.D04G112180' => 'ghi', 'Gohir.D06G073600' => 'ghi', 'Gohir.D09G144700' => 'ghi', 'Gohir.D10G212700' => 'ghi', 'Gohir.D11G343500' => 'ghi', 'Gorai.002G248000' => 'gra', 'Gorai.006G166000' => 'gra', 'Gorai.007G373600' => 'gra', 'Gorai.007G373700' => 'gra', 'Gorai.009G416300' => 'gra', 'Gorai.009G416400' => 'gra', 'Gorai.010G086000' => 'gra', 'Gorai.011G238400' => 'gra', 'GSVIVG01006148001' => 'vvi', 'GSVIVG01015123001' => 'vvi', 'GSVIVG01015124001' => 'vvi', 'GSVIVG01015138001' => 'vvi', 'GSVIVG01015140001' => 'vvi', 'GSVIVG01016257001' => 'vvi', 'GSVIVG01024292001' => 'vvi', 'GSVIVG01024293001' => 'vvi', 'GSVIVG01024294001' => 'vvi', 'GSVIVG01024295001' => 'vvi', 'GSVIVG01024299001' => 'vvi', 'GSVIVG01024303001' => 'vvi', 'GSVIVG01024305001' => 'vvi', 'GSVIVG01024306001' => 'vvi', 'GSVIVG01024315001' => 'vvi', 'GSVIVG01025214001' => 'vvi', 'GSVIVG01025703001' => 'vvi', 'HanXRQChr02g0052151' => 'han', 'HanXRQChr02g0052221' => 'han', 'HanXRQChr02g0053471' => 'han', 'HanXRQChr07g0195401' => 'han', 'HanXRQChr09g0246871' => 'han', 'HanXRQChr13g0400161' => 'han', 'HanXRQChr13g0400171' => 'han', 'HanXRQChr13g0400191' => 'han', 'HanXRQChr14g0454551' => 'han', 'Haze_16872' => 'cav', 'Haze_16875' => 'cav', 'Haze_16876' => 'cav', 'Haze_20579' => 'cav', 'Haze_25962' => 'cav', 'Hma1.2p1_0205F.1_g087330' => 'hma', 'Hma1.2p1_0307F.1_g119900' => 'hma', 'Hma1.2p1_0366F.1_g136840' => 'hma', 'Hma1.2p1_1356F.1_g277860' => 'hma', 'Hma1.2p1_1458F.1_g284720' => 'hma', 'HPP92_007441' => 'vpl', 'HPP92_007442' => 'vpl', 'HPP92_007443' => 'vpl', 'HPP92_007444' => 'vpl', 'HPP92_007445' => 'vpl', 'HPP92_008607' => 'vpl', 'HPP92_021022' => 'vpl', 'HPP92_021023' => 'vpl', 'Hund12083' => 'sun', 'Hund20258' => 'sun', 'Lalb_Chr01g0004411' => 'lal', 'Lalb_Chr01g0004421' => 'lal', 'Lalb_Chr01g0018751' => 'lal', 'Lalb_Chr02g0142261' => 'lal', 'Lalb_Chr02g0156081' => 'lal', 'Lalb_Chr06g0171571' => 'lal', 'Lalb_Chr06g0171591' => 'lal', 'Lalb_Chr17g0349331' => 'lal', 'Lalb_Chr21g0306151' => 'lal', 'Lalb_Chr25g0289081' => 'lal', 'Lj1g0001296' => 'lja', 'Lj1g0004105' => 'lja', 'Lj1g0004110' => 'lja', 'Lj1g0024768' => 'lja', 'Lj2A1021G43' => 'lonja', 'Lj2A114T40' => 'lonja', 'Lj2A11G48' => 'lonja', 'Lj2C16G3' => 'lonja', 'Lj3A983T60' => 'lonja', 'Lj3g0012710' => 'lja', 'Lj3g0027359' => 'lja', 'Lj5g0006407' => 'lja', 'Lj5g0017962' => 'lja', 'Lj5g0021838' => 'lja', 'Lj6g0027600' => 'lja', 'LjContig00081g0013598' => 'lja', 'Lsat_1_v5_gn_2_106520' => 'lsa', 'Lsat_1_v5_gn_2_106540' => 'lsa', 'Lsat_1_v5_gn_2_42720' => 'lsa', 'Lsat_1_v5_gn_6_31000' => 'lsa', 'Lsat_1_v5_gn_6_31080' => 'lsa', 'Lsat_1_v5_gn_9_68321' => 'lsa', 'Manes.04G018000' => 'mes', 'Manes.07G098700' => 'mes', 'Manes.08G008400' => 'mes', 'Manes.09G063700' => 'mes', 'Manes.10G047500' => 'mes', 'Manes.16G098200' => 'mes', 'Mapoly0005s0086' => 'mpo', 'Mapoly0005s0089' => 'mpo', 'Mapoly0009s0173' => 'mpo', 'Mapoly0014s0211' => 'mpo', 'Mapoly0044s0114' => 'mpo', 'Mapoly0070s0061' => 'mpo', 'Mapoly0070s0065' => 'mpo', 'Mapoly0070s0066' => 'mpo', 'Mapoly0070s0068' => 'mpo', 'Mapoly0070s0069' => 'mpo', 'Mapoly0070s0071' => 'mpo', 'Mapoly0132s0049' => 'mpo', 'Mapoly0142s0036' => 'mpo', 'MBI03_g42616_MAGBIO' => 'mbi', 'MBI10_g06947_MAGBIO' => 'mbi', 'MBI18_g13608_MAGBIO' => 'mbi', 'MBI18_g13609_MAGBIO' => 'mbi', 'MBI18_g22096_MAGBIO' => 'mbi', 'MBI18_g31326_MAGBIO' => 'mbi', 'MBI18_g31327_MAGBIO' => 'mbi', 'MBI18_g39298_MAGBIO' => 'mbi', 'MBI19_g19953_MAGBIO' => 'mbi', 'MD01G1106900' => 'mdo', 'MD03G1121400' => 'mdo', 'MD03G1121500' => 'mdo', 'MD04G1096200' => 'mdo', 'MD07G1172700' => 'mdo', 'MD12G1116700' => 'mdo', 'Medtr1g064090' => 'mtr', 'Medtr1g094780' => 'mtr', 'Medtr2g094960' => 'mtr', 'Medtr2g095010' => 'mtr', 'Medtr5g098720' => 'mtr', 'Medtr7g101395' => 'mtr', 'Medtr7g101425' => 'mtr', 'MELO3C014222.2' => 'cme', 'MELO3C014223.2' => 'cme', 'MELO3C014224.2' => 'cme', 'MELO3C014225.2' => 'cme', 'MELO3C014226.2' => 'cme', 'MELO3C014227.2' => 'cme', 'MELO3C014228.2' => 'cme', 'MELO3C014229.2' => 'cme', 'MELO3C015503.2' => 'cme', 'MELO3C017809.2' => 'cme', 'MELO3C017810.2' => 'cme', 'MELO3C017811.2' => 'cme', 'MELO3C019809.2' => 'cme', 'MELO3C025786.2' => 'cme', 'Migut.F01977' => 'egut', 'Migut.J00542' => 'egut', 'Migut.L01685' => 'egut', 'MSTRG.26703' => 'ama', 'MSTRG.5746' => 'ama', 'Nitab4.5_0000071g0170' => 'nta', 'Nitab4.5_0000101g0270' => 'nta', 'Nitab4.5_0000582g0180' => 'nta', 'Nitab4.5_0000754g0260' => 'nta', 'Nitab4.5_0002130g0010' => 'nta', 'Nitab4.5_0005320g0020' => 'nta', 'Nitab4.5_0008883g0010' => 'nta', 'Nitab4.5_0012382g0010' => 'nta', 'Nitab4.5_0018680g0010' => 'nta', 'Nn1g05489' => 'nnu', 'Nn1g05490' => 'nnu', 'Nn1g05587' => 'nnu', 'Nn2g10960' => 'nnu', 'Nn2g11515' => 'nnu', 'Nn2g13724' => 'nnu', 'Nn3g19423' => 'nnu', 'Nn3g19424' => 'nnu', 'Nn3g20361' => 'nnu', 'Nn3g20362' => 'nnu', 'Nn5g29113' => 'nnu', 'Nn5g29114' => 'nnu', 'Nn6g35574' => 'nnu', 'Nn6g35575' => 'nnu', 'Nn7g36418' => 'nnu', 'Nn7g36876' => 'nnu', 'Nn7g37758' => 'nnu', 'Nn8g38741' => 'nnu', 'Nn8g41259' => 'nnu', 'Oeu014383.1' => 'oeu', 'Oeu015307.1' => 'oeu', 'Oeu036623.1' => 'oeu', 'Oeu045213.2' => 'oeu', 'Oeu050307.1' => 'oeu', 'Oeu055571.1' => 'oeu', 'Oeu055584.1' => 'oeu', 'Os02g0626400' => 'osa', 'Os02g0626600' => 'osa', 'Os02g0627100' => 'osa', 'Os04g0518100' => 'osa', 'Os04g0518400' => 'osa', 'Os05g0427400' => 'osa', 'Os08g0308300' => 'osa', 'Os10g0483700' => 'osa', 'Os11g0708900' => 'osa', 'Os12g0461050' => 'osa', 'Os12g0461300' => 'osa', 'Os12g0520200' => 'osa', 'Peaxi162Scf00123g00096' => 'pax', 'Peaxi162Scf00488g00074' => 'pax', 'Peaxi162Scf00858g00215' => 'pax', 'PGR044G1850' => 'pgr', 'PGR142G4008' => 'pgr', 'PGSC0003DMG400005492' => 'stu', 'PGSC0003DMG400019386' => 'stu', 'PGSC0003DMG400023458' => 'stu', 'PGSC0003DMG400031365' => 'stu', 'PGSC0003DMG400031457' => 'stu', 'PGSC0003DMG401021549' => 'stu', 'PGSC0003DMG401021564' => 'stu', 'PGSC0003DMG402021549' => 'stu', 'PGSC0003DMG402021564' => 'stu', 'Phvul.001G177700' => 'pvu', 'Phvul.001G177800' => 'pvu', 'Phvul.007G096100' => 'pvu', 'Phvul.007G096300' => 'pvu', 'Phvul.007G150500' => 'pvu', 'Phvul.008G289500' => 'pvu', 'Potri.006G126800' => 'ptr', 'Potri.008G038200' => 'ptr', 'Potri.010G224100' => 'ptr', 'Potri.010G224200' => 'ptr', 'Potri.016G091100' => 'ptr', 'Pp3c10_21810' => 'ppa', 'Pp3c11_3080' => 'ppa', 'Pp3c13_12190' => 'ppa', 'Pp3c13_9000' => 'ppa', 'Pp3c14_11870' => 'ppa', 'Pp3c17_7320' => 'ppa', 'Pp3c18_5430' => 'ppa', 'Pp3c19_13690' => 'ppa', 'Pp3c1_18680' => 'ppa', 'Pp3c1_18830' => 'ppa', 'Pp3c1_18940' => 'ppa', 'Pp3c20_4540' => 'ppa', 'Pp3c21_7640' => 'ppa', 'Pp3c21_7670' => 'ppa', 'Pp3c21_7680' => 'ppa', 'Pp3c22_17310' => 'ppa', 'Pp3c22_17320' => 'ppa', 'Pp3c22_17540' => 'ppa', 'Pp3c23_17690' => 'ppa', 'Pp3c23_4450' => 'ppa', 'Pp3c24_13110' => 'ppa', 'Pp3c25_2620' => 'ppa', 'Pp3c26_14610' => 'ppa', 'Pp3c26_2420' => 'ppa', 'Pp3c2_30610' => 'ppa', 'Pp3c2_32330' => 'ppa', 'Pp3c2_32410' => 'ppa', 'Pp3c3_1810' => 'ppa', 'Pp3c7_21960' => 'ppa', 'Pp3c7_24510' => 'ppa', 'Prupe.2G211800' => 'ppe', 'Prupe.6G104500' => 'ppe', 'Prupe.6G235400' => 'ppe', 'Psat0s4534g0080' => 'psa', 'Psat0s4806g0040' => 'psa', 'Psat0s4806g0080' => 'psa', 'Psat1g046920' => 'psa', 'Psat2g001960' => 'psa', 'Psat3g023040' => 'psa', 'Psat3g023120' => 'psa', 'Psat3g040960' => 'psa', 'Psat3g041040' => 'psa', 'Psat3g041080' => 'psa', 'Psat3g072160' => 'psa', 'Psat6g072360' => 'psa', 'Psat6g182520' => 'psa', 'PSO063G0499' => 'pso', 'PSO063G0868' => 'pso', 'PSO063G6937' => 'pso', 'PSO339G2188' => 'pso', 'PSO339G2284' => 'pso', 'PSO421G0737' => 'pso', 'PSO801G0780' => 'pso', 'QL02p061264' => 'qlo', 'QL02p061377' => 'qlo', 'QL07p044148' => 'qlo', 'QL07p044165' => 'qlo', 'QL08p055354' => 'qlo', 'QL93p2013_0042' => 'qlo', 'QL93p2013_0048' => 'qlo', 'RcHm_v2.0_Chr1g0363011' => 'rch', 'RcHm_v2.0_Chr3g0469861' => 'rch', 'RcHm_v2.0_Chr7g0212181' => 'rch', 'Rhsim03G0118900' => 'rsi', 'Rhsim03G0119000' => 'rsi', 'Rhsim03G0119100' => 'rsi', 'Rhsim04G0145800' => 'rsi', 'Rhsim13G0096300' => 'rsi', 'Sabra06G0099900' => 'sbr', 'Sabra08G0025700' => 'sbr', 'Sabra08G0025800' => 'sbr', 'Sabra08G0025900' => 'sbr', 'Sabra10G0173400' => 'sbr', 'Sabra16G0096400' => 'sbr', 'SalBow2G0227' => 'sbo', 'SalBow3G0858' => 'sbo', 'SalBow3G1710' => 'sbo', 'SalBow3G3417' => 'sbo', 'SalBow3G3731' => 'sbo', 'SalBow4G0717' => 'sbo', 'SalBow5G1955' => 'sbo', 'SalBow5G2236' => 'sbo', 'SalBow6G6448' => 'sbo', 'SalBow7G4181' => 'sbo', 'SalBow8G2765' => 'sbo', 'SalBow8G4126' => 'sbo', 'Sc02g0001760' => 'sci', 'Sc09g0006180' => 'sci', 'Sed0003527' => 'sed', 'Sed0007864' => 'sed', 'Sed0008292' => 'sed', 'Sed0012846' => 'sed', 'Sed0013151' => 'sed', 'Sed0015918' => 'sed', 'Sed0018325' => 'sed', 'Sed0018797' => 'sed', 'Sed0023091' => 'sed', 'Sed0025747' => 'sed', 'Sed0026131' => 'sed', 'Sed0026761' => 'sed', 'Sed0026887' => 'sed', 'Sed0027608' => 'sed', 'SEGI_00732' => 'sgi', 'SEGI_06616' => 'sgi', 'SEGI_12036' => 'sgi', 'SEGI_12427' => 'sgi', 'SEGI_18771' => 'sgi', 'SEGI_22248' => 'sgi', 'SEGI_33141' => 'sgi', 'SEGI_38051' => 'sgi', 'SGA_v2.0_scaffold126G33933' => 'sas', 'SGA_v2.0_scaffold35G14141' => 'sas', 'SGA_v2.0_scaffold452G51823' => 'sas', 'SHI12490' => 'shi', 'SMO268G0021' => 'smo', 'Solyc00g500095.1' => 'sly', 'Solyc00g500353.1' => 'sly', 'Solyc03g042560.3' => 'sly', 'Solyc03g071870.1' => 'sly', 'Solyc03g078270.2' => 'sly', 'Solyc03g078280.3' => 'sly', 'Solyc05g056170.3' => 'sly', 'Solyc09g007890.1' => 'sly', 'Solyc09g007900.4' => 'sly', 'Solyc09g007910.4' => 'sly', 'Solyc09g007920.4' => 'sly', 'Solyc10g011920.3' => 'sly', 'Solyc10g011925.1' => 'sly', 'Solyc10g011930.1' => 'sly', 'Solyc10g086180.2' => 'sly', 'Sopen03g007350' => 'spe', 'Sopen03g007390' => 'spe', 'Sopen03g021000' => 'spe', 'Sopen03g021010' => 'spe', 'Sopen05g034580' => 'spe', 'Sopen09g002720' => 'spe', 'Sopen09g002730' => 'spe', 'Sopen09g002740' => 'spe', 'Sopen09g002750' => 'spe', 'Sopen10g005710' => 'spe', 'Sopen10g035560' => 'spe', 'Sp3g08610' => 'spa', 'Sp4g19350' => 'spa', 'Sp5g09080' => 'spa', 'TAR369G0708' => 'tar', 'TAR624G1211' => 'tar', 'TAR633G2197' => 'tar', 'TAR636G3614' => 'tar', 'THA.LOC104805263' => 'tha', 'THA.LOC104806492' => 'tha', 'THA.LOC104816418' => 'tha', 'THA.LOC104823458' => 'tha', 'Thecc.05G062400' => 'tca', 'Thecc.09G343800' => 'tca', 'Thecc.10G076600' => 'tca', 'Thhalv10006288m.g' => 'esa', 'Thhalv10010153m.g' => 'esa', 'Thhalv10016314m.g' => 'esa', 'Thhalv10020168m.g' => 'esa', 'TPR.G11497' => 'tpr', 'TPR.G11622' => 'tpr', 'TPR.G16033' => 'tpr', 'TPR.G16051' => 'tpr', 'TPR.G16058' => 'tpr', 'TPR.G16065' => 'tpr', 'TPR.G1967' => 'tpr', 'TPR.G35217' => 'tpr', 'TPR.G35895' => 'tpr', 'TPR.G36469' => 'tpr', 'TPR.G9372' => 'tpr', 'TWI38G1740' => 'twi', 'TWI38G1917' => 'twi', 'TWI53G2138' => 'twi', 'TWI63G1305' => 'twi', 'TWI74G1356' => 'twi', 'TWI77G0988' => 'twi', 'unitig_26.g9224' => 'ugi', 'unitig_749.g14273' => 'ugi', 'unitig_749.g14274' => 'ugi', 'unitig_8.g4336' => 'ugi', 'unitig_8.g4337' => 'ugi', 'unitig_8.g4338' => 'ugi', 'vmacro03214' => 'vma', 'vmacro07061' => 'vma', 'vmacro08770' => 'vma', 'vmacro08771' => 'vma', 'vmacro08772' => 'vma', 'VMungo0647G0568' => 'vmu', 'VMungo0720G0549' => 'vmu', 'VMungo0720G2073' => 'vmu', 'VMungo0720G2437' => 'vmu', 'VMungo1383G0800' => 'vmu', 'VMungo1383G2201' => 'vmu', 'Zm00001eb000140' => 'zma', 'Zm00001eb050970' => 'zma', 'Zm00001eb077220' => 'zma', 'Zm00001eb077230' => 'zma', 'Zm00001eb135760' => 'zma', 'Zm00001eb144920' => 'zma', 'Zm00001eb185240' => 'zma', 'Zm00001eb185250' => 'zma', 'Zm00001eb185260' => 'zma', 'Zm00001eb205530' => 'zma', 'Zm00001eb228950' => 'zma', 'Zm00001eb247630' => 'zma', 'Zm00001eb247650' => 'zma', 'Zm00001eb247660' => 'zma', 'Zm00001eb336630' => 'zma', 'Zm00001eb363980' => 'zma', 'Zm00001eb363990' => 'zma', 'Zm00001eb364000' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D000844', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000844' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D000844', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '707', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D000844' ) ), 'genes' => array( 'A04p06200' => 'bna', 'A04p15880' => 'bna', 'A04p28310' => 'bna', 'A05p08780' => 'bna', 'A05p38810' => 'bna', 'A07p21490' => 'bna', 'A09p46290' => 'bna', 'Aa31LG3G2910' => 'aar', 'Aa31LG5G22310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4622' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5205' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.725' => 'aag', 'Actinidia06760' => 'ach', 'Actinidia07153' => 'ach', 'Actinidia13078' => 'ach', 'Actinidia22446' => 'ach', 'Actinidia24116' => 'ach', 'Actinidia31339' => 'ach', 'Actinidia31340' => 'ach', 'Actinidia32439' => 'ach', 'Actinidia32440' => 'ach', 'Actinidia32441' => 'ach', 'Ah.15g092440' => 'amhyb', 'AL3G21670' => 'aly', 'AL4G33370' => 'aly', 'AL5G34170' => 'aly', 'AL6G13850' => 'aly', 'Aqoxy1G01205' => 'aox', 'Aqoxy2G01818' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0B4MFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5H4H17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9CK4GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EEZ4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI9C9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Z3VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB2RRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PUMP6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2YH27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULT2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1SQAY' => 'arhy', 'AT2G37040' => 'ath', 'AT3G10340' => 'ath', 'AT3G53260' => 'ath', 'AT5G04230' => 'ath', 'ATR0048G051' => 'atr', 'ATR0598G039' => 'atr', 'ATR0598G058' => 'atr', 'ATR0598G114' => 'atr', 'ATR0763G117' => 'atr', 'Atru.chr12.710' => 'acertr', 'Atru.chr3.3599' => 'acertr', 'Atru.chr7.1656' => 'acertr', 'Atru.chr8.1402' => 'acertr', 'AUR62039879' => 'cqu', 'AUR62040467' => 'cqu', 'BcaB01g00295' => 'bca', 'BcaB01g03796' => 'bca', 'BcaB01g03798' => 'bca', 'BcaB02g07797' => 'bca', 'BcaB02g08531' => 'bca', 'BcaB02g09307' => 'bca', 'BcaB05g21767' => 'bca', 'BcaB05g21768' => 'bca', 'BcaB06g28973' => 'bca', 'BcaC02g07551' => 'bca', 'BcaC02g07552' => 'bca', 'BcaC02g07553' => 'bca', 'BcaC02g07556' => 'bca', 'BcaC02g09174' => 'bca', 'BcaC02g09175' => 'bca', 'BcaC02g11831' => 'bca', 'BcaC02g12836' => 'bca', 'BcaC03g12950' => 'bca', 'BcaC05g29476' => 'bca', 'BcaC07g39687' => 'bca', 'BcaC07g39688' => 'bca', 'BcaC07g39689' => 'bca', 'BcaNung04594' => 'bca', 'BcaNung06565' => 'bca', 'BolC2t06142H' => 'bol', 'BolC4t22683H' => 'bol', 'BolC4t25500H' => 'bol', 'BolC4t25539H' => 'bol', 'BolC4t26629H' => 'bol', 'BolC4t28059H' => 'bol', 'BolC5t34439H' => 'bol', 'BolC6t37294H' => 'bol', 'BolC8t50456H' => 'bol', 'BraA02t04805Z' => 'bra', 'BraA04t16324Z' => 'bra', 'BraA04t17217Z' => 'bra', 'BraA04t17220Z' => 'bra', 'BraA04t17221Z' => 'bra', 'BraA04t18313Z' => 'bra', 'BraA05t19846Z' => 'bra', 'BraA05t22672Z' => 'bra', 'BraA07t29836Z' => 'bra', 'BraA09t40092Z' => 'bra', 'C02p01850' => 'bna', 'C04p10910' => 'bna', 'C04p39320' => 'bna', 'C04p39330' => 'bna', 'C04p39690' => 'bna', 'C04p39700' => 'bna', 'C04p50310' => 'bna', 'C04p65660' => 'bna', 'C05p57840' => 'bna', 'C06p21090' => 'bna', 'C08p28490' => 'bna', 'CAN.G3578.1' => 'can', 'CAN.G363.12' => 'can', 'CAN.G363.13' => 'can', 'CAN.G363.14' => 'can', 'CAN.G363.7' => 'can', 'CAN.G363.8' => 'can', 'CAN.G509.12' => 'can', 'CAN.G694.92' => 'can', 'CAN.G806.3' => 'can', 'CANSAT56G4207' => 'cansat', 'CANSAT80G0523' => 'cansat', 'CANSAT80G0733' => 'cansat', 'CANSAT80G0924' => 'cansat', 'CANSAT80G1719' => 'cansat', 'CANSAT80G1948' => 'cansat', 'CANSAT80G2016' => 'cansat', 'CARHR084820' => 'chi', 'CARHR131540' => 'chi', 'CARHR289320' => 'chi', 'Carub.0003s0952' => 'cru', 'Carub.0004s1892' => 'cru', 'Carub.0005s1980' => 'cru', 'Ca_06487_v3' => 'car', 'Ca_08848_v3' => 'car', 'Ca_10557_v3' => 'car', 'Ca_11483_v3' => 'car', 'Ca_29940_v3' => 'car', 'CBR_g34530' => 'cbr', 'CBR_g57646' => 'cbr', 'Cc00_g20750' => 'ccan', 'Cc01_g10880' => 'ccan', 'Cc02_g11230' => 'ccan', 'Cc06_g03980' => 'ccan', 'CDE03G0013' => 'cde', 'CDE03G0030' => 'cde', 'CDE03G0232' => 'cde', 'CDE04G0744' => 'cde', 'CDE04G2639' => 'cde', 'CDE04G3431' => 'cde', 'CDE04G3557' => 'cde', 'CDE05G0703' => 'cde', 'CDE05G2606' => 'cde', 'CDE06G0268' => 'cde', 'CDE06G0737' => 'cde', 'CDE06G2597' => 'cde', 'CDE07G0082' => 'cde', 'CDE07G0918' => 'cde', 'CDE07G1529' => 'cde', 'CDE07G1531' => 'cde', 'Cfa001659' => 'cfa', 'Cfa001660' => 'cfa', 'Cfa003036' => 'cfa', 'Cfa003037' => 'cfa', 'Cfa003039' => 'cfa', 'Cfa017574' => 'cfa', 'Ciclev10010874m.g' => 'ccl', 'Ciclev10011134m.g' => 'ccl', 'Ciclev10011175m.g' => 'ccl', 'Ciclev10027912m.g' => 'ccl', 'Ciclev10027913m.g' => 'ccl', 'Ciclev10029946m.g' => 'ccl', 'Ciclev10030821m.g' => 'ccl', 'CiPaw.01G271300' => 'cil', 'CiPaw.02G173200' => 'cil', 'CiPaw.04G145900' => 'cil', 'CiPaw.04G146000' => 'cil', 'CiPaw.04G146100' => 'cil', 'CiPaw.09G174400' => 'cil', 'COL.COLO4_18142' => 'col', 'COL.COLO4_21739' => 'col', 'COL.COLO4_26994' => 'col', 'COL.COLO4_36662' => 'col', 'Cpa.g.c40737' => 'cpa', 'Cpa.g.sc2443.2' => 'cpa', 'Cpa.g.sc311.1' => 'cpa', 'Cpa.g.sc390.3' => 'cpa', 'Cpa.g.sc92.120' => 'cpa', 'CsaV3_1G040750' => 'csa', 'CsaV3_4G002290' => 'csa', 'CsaV3_4G002300' => 'csa', 'CsaV3_4G002310' => 'csa', 'CsaV3_4G002320' => 'csa', 'CsaV3_4G002330' => 'csa', 'CsaV3_6G014060' => 'csa', 'CsaV3_6G036550' => 'csa', 'CsaV3_6G039660' => 'csa', 'CsaV3_6G039670' => 'csa', 'CsaV3_6G039680' => 'csa', 'CsaV3_6G039690' => 'csa', 'CsaV3_6G039700' => 'csa', 'CsaV3_6G039710' => 'csa', 'CsaV3_6G039720' => 'csa', 'CSS0001442' => 'camsi', 'CSS0010367' => 'camsi', 'CSS0018870' => 'camsi', 'CSS0021474' => 'camsi', 'CSS0034802' => 'camsi', 'CSS0041448' => 'camsi', 'CSS0048281' => 'camsi', 'DCAR_014989' => 'dca', 'DCAR_017697' => 'dca', 'DCAR_020833' => 'dca', 'Dinv25385' => 'din', 'Dinv31309' => 'din', 'Dinv31310' => 'din', 'Dinv32720' => 'din', 'Dinv35765' => 'din', 'Dinv36424' => 'din', 'Dinv37296' => 'din', 'Dinv42363' => 'din', 'Duzib093G1956' => 'dzi', 'Duzib106G1669' => 'dzi', 'Duzib106G1705' => 'dzi', 'Duzib114G1045' => 'dzi', 'Duzib128G0518' => 'dzi', 'Duzib128G1271' => 'dzi', 'Duzib168G1200' => 'dzi', 'Duzib168G1693' => 'dzi', 'ECA232G3724' => 'eca', 'ECA233G3222' => 'eca', 'ECA233G6263' => 'eca', 'ECA236G2838' => 'eca', 'ECA238G0266' => 'eca', 'ECA238G0276' => 'eca', 'ECA238G0836' => 'eca', 'ECA238G3831' => 'eca', 'EL10Ac7g16597' => 'bvu', 'Eucgr.A01144' => 'egr', 'Eucgr.C03570' => 'egr', 'Eucgr.G02848' => 'egr', 'Eucgr.G02849' => 'egr', 'Eucgr.G02850' => 'egr', 'Eucgr.G02851' => 'egr', 'Eucgr.G02852' => 'egr', 'Eucgr.J00907' => 'egr', 'Eucgr.J01079' => 'egr', 'FAN01G2698' => 'fan', 'FAN02G0949' => 'fan', 'FAN03G3379' => 'fan', 'FAN06G1111' => 'fan', 'FAN06G2093' => 'fan', 'FAN09G1337' => 'fan', 'FAN10G2818' => 'fan', 'FAN10G2959' => 'fan', 'FAN14G2582' => 'fan', 'FvH4_6g16060' => 'fve', 'FvH4_7g19130' => 'fve', 'Glyma.02G309300' => 'gma', 'Glyma.03G181600' => 'gma', 'Glyma.03G181700' => 'gma', 'Glyma.10G058200' => 'gma', 'Glyma.10G209800' => 'gma', 'Glyma.13G145000' => 'gma', 'Glyma.19G182300' => 'gma', 'Glyma.20G180800' => 'gma', 'Gohir.A01G214800' => 'ghi', 'Gohir.A04G073300' => 'ghi', 'Gohir.A04G073400' => 'ghi', 'Gohir.A06G074800' => 'ghi', 'Gohir.A09G148900' => 'ghi', 'Gohir.A10G204700' => 'ghi', 'Gohir.A11G324340' => 'ghi', 'Gohir.D01G203300' => 'ghi', 'Gohir.D04G112140' => 'ghi', 'Gohir.D04G112180' => 'ghi', 'Gohir.D06G073600' => 'ghi', 'Gohir.D09G144700' => 'ghi', 'Gohir.D10G212700' => 'ghi', 'Gohir.D11G343500' => 'ghi', 'Gorai.002G248000' => 'gra', 'Gorai.006G166000' => 'gra', 'Gorai.007G373600' => 'gra', 'Gorai.007G373700' => 'gra', 'Gorai.009G416300' => 'gra', 'Gorai.009G416400' => 'gra', 'Gorai.010G086000' => 'gra', 'Gorai.011G238400' => 'gra', 'GSVIVG01006148001' => 'vvi', 'GSVIVG01015123001' => 'vvi', 'GSVIVG01015124001' => 'vvi', 'GSVIVG01015138001' => 'vvi', 'GSVIVG01015140001' => 'vvi', 'GSVIVG01016257001' => 'vvi', 'GSVIVG01024292001' => 'vvi', 'GSVIVG01024293001' => 'vvi', 'GSVIVG01024294001' => 'vvi', 'GSVIVG01024295001' => 'vvi', 'GSVIVG01024299001' => 'vvi', 'GSVIVG01024303001' => 'vvi', 'GSVIVG01024305001' => 'vvi', 'GSVIVG01024306001' => 'vvi', 'GSVIVG01024315001' => 'vvi', 'GSVIVG01025214001' => 'vvi', 'GSVIVG01025703001' => 'vvi', 'HanXRQChr02g0052151' => 'han', 'HanXRQChr02g0052221' => 'han', 'HanXRQChr02g0053471' => 'han', 'HanXRQChr07g0195401' => 'han', 'HanXRQChr09g0246871' => 'han', 'HanXRQChr13g0400161' => 'han', 'HanXRQChr13g0400171' => 'han', 'HanXRQChr13g0400191' => 'han', 'HanXRQChr14g0454551' => 'han', 'Haze_16872' => 'cav', 'Haze_16875' => 'cav', 'Haze_16876' => 'cav', 'Haze_20579' => 'cav', 'Haze_25962' => 'cav', 'Hma1.2p1_0205F.1_g087330' => 'hma', 'Hma1.2p1_0307F.1_g119900' => 'hma', 'Hma1.2p1_0366F.1_g136840' => 'hma', 'Hma1.2p1_1356F.1_g277860' => 'hma', 'Hma1.2p1_1458F.1_g284720' => 'hma', 'HPP92_007441' => 'vpl', 'HPP92_007442' => 'vpl', 'HPP92_007443' => 'vpl', 'HPP92_007444' => 'vpl', 'HPP92_007445' => 'vpl', 'HPP92_008607' => 'vpl', 'HPP92_021022' => 'vpl', 'HPP92_021023' => 'vpl', 'Hund12083' => 'sun', 'Hund20258' => 'sun', 'Lalb_Chr01g0004411' => 'lal', 'Lalb_Chr01g0004421' => 'lal', 'Lalb_Chr01g0018751' => 'lal', 'Lalb_Chr02g0142261' => 'lal', 'Lalb_Chr02g0156081' => 'lal', 'Lalb_Chr06g0171571' => 'lal', 'Lalb_Chr06g0171591' => 'lal', 'Lalb_Chr17g0349331' => 'lal', 'Lalb_Chr21g0306151' => 'lal', 'Lalb_Chr25g0289081' => 'lal', 'Lj1g0001296' => 'lja', 'Lj1g0004105' => 'lja', 'Lj1g0004110' => 'lja', 'Lj1g0024768' => 'lja', 'Lj2A1021G43' => 'lonja', 'Lj2A114T40' => 'lonja', 'Lj2A11G48' => 'lonja', 'Lj2C16G3' => 'lonja', 'Lj3A983T60' => 'lonja', 'Lj3g0012710' => 'lja', 'Lj3g0027359' => 'lja', 'Lj5g0006407' => 'lja', 'Lj5g0017962' => 'lja', 'Lj5g0021838' => 'lja', 'Lj6g0027600' => 'lja', 'LjContig00081g0013598' => 'lja', 'Lsat_1_v5_gn_2_106520' => 'lsa', 'Lsat_1_v5_gn_2_106540' => 'lsa', 'Lsat_1_v5_gn_2_42720' => 'lsa', 'Lsat_1_v5_gn_6_31000' => 'lsa', 'Lsat_1_v5_gn_6_31080' => 'lsa', 'Lsat_1_v5_gn_9_68321' => 'lsa', 'Manes.04G018000' => 'mes', 'Manes.07G098700' => 'mes', 'Manes.08G008400' => 'mes', 'Manes.09G063700' => 'mes', 'Manes.10G047500' => 'mes', 'Manes.16G098200' => 'mes', 'Mapoly0005s0086' => 'mpo', 'Mapoly0005s0089' => 'mpo', 'Mapoly0009s0173' => 'mpo', 'Mapoly0014s0211' => 'mpo', 'Mapoly0044s0114' => 'mpo', 'Mapoly0070s0061' => 'mpo', 'Mapoly0070s0065' => 'mpo', 'Mapoly0070s0066' => 'mpo', 'Mapoly0070s0068' => 'mpo', 'Mapoly0070s0069' => 'mpo', 'Mapoly0070s0071' => 'mpo', 'Mapoly0132s0049' => 'mpo', 'Mapoly0142s0036' => 'mpo', 'MBI03_g42616_MAGBIO' => 'mbi', 'MBI10_g06947_MAGBIO' => 'mbi', 'MBI18_g13608_MAGBIO' => 'mbi', 'MBI18_g13609_MAGBIO' => 'mbi', 'MBI18_g22096_MAGBIO' => 'mbi', 'MBI18_g31326_MAGBIO' => 'mbi', 'MBI18_g31327_MAGBIO' => 'mbi', 'MBI18_g39298_MAGBIO' => 'mbi', 'MBI19_g19953_MAGBIO' => 'mbi', 'MD01G1106900' => 'mdo', 'MD03G1121400' => 'mdo', 'MD03G1121500' => 'mdo', 'MD04G1096200' => 'mdo', 'MD07G1172700' => 'mdo', 'MD12G1116700' => 'mdo', 'Medtr1g064090' => 'mtr', 'Medtr1g094780' => 'mtr', 'Medtr2g094960' => 'mtr', 'Medtr2g095010' => 'mtr', 'Medtr5g098720' => 'mtr', 'Medtr7g101395' => 'mtr', 'Medtr7g101425' => 'mtr', 'MELO3C014222.2' => 'cme', 'MELO3C014223.2' => 'cme', 'MELO3C014224.2' => 'cme', 'MELO3C014225.2' => 'cme', 'MELO3C014226.2' => 'cme', 'MELO3C014227.2' => 'cme', 'MELO3C014228.2' => 'cme', 'MELO3C014229.2' => 'cme', 'MELO3C015503.2' => 'cme', 'MELO3C017809.2' => 'cme', 'MELO3C017810.2' => 'cme', 'MELO3C017811.2' => 'cme', 'MELO3C019809.2' => 'cme', 'MELO3C025786.2' => 'cme', 'Migut.F01977' => 'egut', 'Migut.J00542' => 'egut', 'Migut.L01685' => 'egut', 'MSTRG.26703' => 'ama', 'MSTRG.5746' => 'ama', 'Nitab4.5_0000071g0170' => 'nta', 'Nitab4.5_0000101g0270' => 'nta', 'Nitab4.5_0000582g0180' => 'nta', 'Nitab4.5_0000754g0260' => 'nta', 'Nitab4.5_0002130g0010' => 'nta', 'Nitab4.5_0005320g0020' => 'nta', 'Nitab4.5_0008883g0010' => 'nta', 'Nitab4.5_0012382g0010' => 'nta', 'Nitab4.5_0018680g0010' => 'nta', 'Nn1g05489' => 'nnu', 'Nn1g05490' => 'nnu', 'Nn1g05587' => 'nnu', 'Nn2g10960' => 'nnu', 'Nn2g11515' => 'nnu', 'Nn2g13724' => 'nnu', 'Nn3g19423' => 'nnu', 'Nn3g19424' => 'nnu', 'Nn3g20361' => 'nnu', 'Nn3g20362' => 'nnu', 'Nn5g29113' => 'nnu', 'Nn5g29114' => 'nnu', 'Nn6g35574' => 'nnu', 'Nn6g35575' => 'nnu', 'Nn7g36418' => 'nnu', 'Nn7g36876' => 'nnu', 'Nn7g37758' => 'nnu', 'Nn8g38741' => 'nnu', 'Nn8g41259' => 'nnu', 'Oeu014383.1' => 'oeu', 'Oeu015307.1' => 'oeu', 'Oeu036623.1' => 'oeu', 'Oeu045213.2' => 'oeu', 'Oeu050307.1' => 'oeu', 'Oeu055571.1' => 'oeu', 'Oeu055584.1' => 'oeu', 'Os02g0626400' => 'osa', 'Os02g0626600' => 'osa', 'Os02g0627100' => 'osa', 'Os04g0518100' => 'osa', 'Os04g0518400' => 'osa', 'Os05g0427400' => 'osa', 'Os08g0308300' => 'osa', 'Os10g0483700' => 'osa', 'Os11g0708900' => 'osa', 'Os12g0461050' => 'osa', 'Os12g0461300' => 'osa', 'Os12g0520200' => 'osa', 'Peaxi162Scf00123g00096' => 'pax', 'Peaxi162Scf00488g00074' => 'pax', 'Peaxi162Scf00858g00215' => 'pax', 'PGR044G1850' => 'pgr', 'PGR142G4008' => 'pgr', 'PGSC0003DMG400005492' => 'stu', 'PGSC0003DMG400019386' => 'stu', 'PGSC0003DMG400023458' => 'stu', 'PGSC0003DMG400031365' => 'stu', 'PGSC0003DMG400031457' => 'stu', 'PGSC0003DMG401021549' => 'stu', 'PGSC0003DMG401021564' => 'stu', 'PGSC0003DMG402021549' => 'stu', 'PGSC0003DMG402021564' => 'stu', 'Phvul.001G177700' => 'pvu', 'Phvul.001G177800' => 'pvu', 'Phvul.007G096100' => 'pvu', 'Phvul.007G096300' => 'pvu', 'Phvul.007G150500' => 'pvu', 'Phvul.008G289500' => 'pvu', 'Potri.006G126800' => 'ptr', 'Potri.008G038200' => 'ptr', 'Potri.010G224100' => 'ptr', 'Potri.010G224200' => 'ptr', 'Potri.016G091100' => 'ptr', 'Pp3c10_21810' => 'ppa', 'Pp3c11_3080' => 'ppa', 'Pp3c13_12190' => 'ppa', 'Pp3c13_9000' => 'ppa', 'Pp3c14_11870' => 'ppa', 'Pp3c17_7320' => 'ppa', 'Pp3c18_5430' => 'ppa', 'Pp3c19_13690' => 'ppa', 'Pp3c1_18680' => 'ppa', 'Pp3c1_18830' => 'ppa', 'Pp3c1_18940' => 'ppa', 'Pp3c20_4540' => 'ppa', 'Pp3c21_7640' => 'ppa', 'Pp3c21_7670' => 'ppa', 'Pp3c21_7680' => 'ppa', 'Pp3c22_17310' => 'ppa', 'Pp3c22_17320' => 'ppa', 'Pp3c22_17540' => 'ppa', 'Pp3c23_17690' => 'ppa', 'Pp3c23_4450' => 'ppa', 'Pp3c24_13110' => 'ppa', 'Pp3c25_2620' => 'ppa', 'Pp3c26_14610' => 'ppa', 'Pp3c26_2420' => 'ppa', 'Pp3c2_30610' => 'ppa', 'Pp3c2_32330' => 'ppa', 'Pp3c2_32410' => 'ppa', 'Pp3c3_1810' => 'ppa', 'Pp3c7_21960' => 'ppa', 'Pp3c7_24510' => 'ppa', 'Prupe.2G211800' => 'ppe', 'Prupe.6G104500' => 'ppe', 'Prupe.6G235400' => 'ppe', 'Psat0s4534g0080' => 'psa', 'Psat0s4806g0040' => 'psa', 'Psat0s4806g0080' => 'psa', 'Psat1g046920' => 'psa', 'Psat2g001960' => 'psa', 'Psat3g023040' => 'psa', 'Psat3g023120' => 'psa', 'Psat3g040960' => 'psa', 'Psat3g041040' => 'psa', 'Psat3g041080' => 'psa', 'Psat3g072160' => 'psa', 'Psat6g072360' => 'psa', 'Psat6g182520' => 'psa', 'PSO063G0499' => 'pso', 'PSO063G0868' => 'pso', 'PSO063G6937' => 'pso', 'PSO339G2188' => 'pso', 'PSO339G2284' => 'pso', 'PSO421G0737' => 'pso', 'PSO801G0780' => 'pso', 'QL02p061264' => 'qlo', 'QL02p061377' => 'qlo', 'QL07p044148' => 'qlo', 'QL07p044165' => 'qlo', 'QL08p055354' => 'qlo', 'QL93p2013_0042' => 'qlo', 'QL93p2013_0048' => 'qlo', 'RcHm_v2.0_Chr1g0363011' => 'rch', 'RcHm_v2.0_Chr3g0469861' => 'rch', 'RcHm_v2.0_Chr7g0212181' => 'rch', 'Rhsim03G0118900' => 'rsi', 'Rhsim03G0119000' => 'rsi', 'Rhsim03G0119100' => 'rsi', 'Rhsim04G0145800' => 'rsi', 'Rhsim13G0096300' => 'rsi', 'Sabra06G0099900' => 'sbr', 'Sabra08G0025700' => 'sbr', 'Sabra08G0025800' => 'sbr', 'Sabra08G0025900' => 'sbr', 'Sabra10G0173400' => 'sbr', 'Sabra16G0096400' => 'sbr', 'SalBow2G0227' => 'sbo', 'SalBow3G0858' => 'sbo', 'SalBow3G1710' => 'sbo', 'SalBow3G3417' => 'sbo', 'SalBow3G3731' => 'sbo', 'SalBow4G0717' => 'sbo', 'SalBow5G1955' => 'sbo', 'SalBow5G2236' => 'sbo', 'SalBow6G6448' => 'sbo', 'SalBow7G4181' => 'sbo', 'SalBow8G2765' => 'sbo', 'SalBow8G4126' => 'sbo', 'Sc02g0001760' => 'sci', 'Sc09g0006180' => 'sci', 'Sed0003527' => 'sed', 'Sed0007864' => 'sed', 'Sed0008292' => 'sed', 'Sed0012846' => 'sed', 'Sed0013151' => 'sed', 'Sed0015918' => 'sed', 'Sed0018325' => 'sed', 'Sed0018797' => 'sed', 'Sed0023091' => 'sed', 'Sed0025747' => 'sed', 'Sed0026131' => 'sed', 'Sed0026761' => 'sed', 'Sed0026887' => 'sed', 'Sed0027608' => 'sed', 'SEGI_00732' => 'sgi', 'SEGI_06616' => 'sgi', 'SEGI_12036' => 'sgi', 'SEGI_12427' => 'sgi', 'SEGI_18771' => 'sgi', 'SEGI_22248' => 'sgi', 'SEGI_33141' => 'sgi', 'SEGI_38051' => 'sgi', 'SGA_v2.0_scaffold126G33933' => 'sas', 'SGA_v2.0_scaffold35G14141' => 'sas', 'SGA_v2.0_scaffold452G51823' => 'sas', 'SHI12490' => 'shi', 'SMO268G0021' => 'smo', 'Solyc00g500095.1' => 'sly', 'Solyc00g500353.1' => 'sly', 'Solyc03g042560.3' => 'sly', 'Solyc03g071870.1' => 'sly', 'Solyc03g078270.2' => 'sly', 'Solyc03g078280.3' => 'sly', 'Solyc05g056170.3' => 'sly', 'Solyc09g007890.1' => 'sly', 'Solyc09g007900.4' => 'sly', 'Solyc09g007910.4' => 'sly', 'Solyc09g007920.4' => 'sly', 'Solyc10g011920.3' => 'sly', 'Solyc10g011925.1' => 'sly', 'Solyc10g011930.1' => 'sly', 'Solyc10g086180.2' => 'sly', 'Sopen03g007350' => 'spe', 'Sopen03g007390' => 'spe', 'Sopen03g021000' => 'spe', 'Sopen03g021010' => 'spe', 'Sopen05g034580' => 'spe', 'Sopen09g002720' => 'spe', 'Sopen09g002730' => 'spe', 'Sopen09g002740' => 'spe', 'Sopen09g002750' => 'spe', 'Sopen10g005710' => 'spe', 'Sopen10g035560' => 'spe', 'Sp3g08610' => 'spa', 'Sp4g19350' => 'spa', 'Sp5g09080' => 'spa', 'TAR369G0708' => 'tar', 'TAR624G1211' => 'tar', 'TAR633G2197' => 'tar', 'TAR636G3614' => 'tar', 'THA.LOC104805263' => 'tha', 'THA.LOC104806492' => 'tha', 'THA.LOC104816418' => 'tha', 'THA.LOC104823458' => 'tha', 'Thecc.05G062400' => 'tca', 'Thecc.09G343800' => 'tca', 'Thecc.10G076600' => 'tca', 'Thhalv10006288m.g' => 'esa', 'Thhalv10010153m.g' => 'esa', 'Thhalv10016314m.g' => 'esa', 'Thhalv10020168m.g' => 'esa', 'TPR.G11497' => 'tpr', 'TPR.G11622' => 'tpr', 'TPR.G16033' => 'tpr', 'TPR.G16051' => 'tpr', 'TPR.G16058' => 'tpr', 'TPR.G16065' => 'tpr', 'TPR.G1967' => 'tpr', 'TPR.G35217' => 'tpr', 'TPR.G35895' => 'tpr', 'TPR.G36469' => 'tpr', 'TPR.G9372' => 'tpr', 'TWI38G1740' => 'twi', 'TWI38G1917' => 'twi', 'TWI53G2138' => 'twi', 'TWI63G1305' => 'twi', 'TWI74G1356' => 'twi', 'TWI77G0988' => 'twi', 'unitig_26.g9224' => 'ugi', 'unitig_749.g14273' => 'ugi', 'unitig_749.g14274' => 'ugi', 'unitig_8.g4336' => 'ugi', 'unitig_8.g4337' => 'ugi', 'unitig_8.g4338' => 'ugi', 'vmacro03214' => 'vma', 'vmacro07061' => 'vma', 'vmacro08770' => 'vma', 'vmacro08771' => 'vma', 'vmacro08772' => 'vma', 'VMungo0647G0568' => 'vmu', 'VMungo0720G0549' => 'vmu', 'VMungo0720G2073' => 'vmu', 'VMungo0720G2437' => 'vmu', 'VMungo1383G0800' => 'vmu', 'VMungo1383G2201' => 'vmu', 'Zm00001eb000140' => 'zma', 'Zm00001eb050970' => 'zma', 'Zm00001eb077220' => 'zma', 'Zm00001eb077230' => 'zma', 'Zm00001eb135760' => 'zma', 'Zm00001eb144920' => 'zma', 'Zm00001eb185240' => 'zma', 'Zm00001eb185250' => 'zma', 'Zm00001eb185260' => 'zma', 'Zm00001eb205530' => 'zma', 'Zm00001eb228950' => 'zma', 'Zm00001eb247630' => 'zma', 'Zm00001eb247650' => 'zma', 'Zm00001eb247660' => 'zma', 'Zm00001eb336630' => 'zma', 'Zm00001eb363980' => 'zma', 'Zm00001eb363990' => 'zma', 'Zm00001eb364000' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D000844' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000844' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D000844' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D000844' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000844', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '707', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A04p06200' => 'bna', 'A04p15880' => 'bna', 'A04p28310' => 'bna', 'A05p08780' => 'bna', 'A05p38810' => 'bna', 'A07p21490' => 'bna', 'A09p46290' => 'bna', 'Aa31LG3G2910' => 'aar', 'Aa31LG5G22310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4622' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5205' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.725' => 'aag', 'Actinidia06760' => 'ach', 'Actinidia07153' => 'ach', 'Actinidia13078' => 'ach', 'Actinidia22446' => 'ach', 'Actinidia24116' => 'ach', 'Actinidia31339' => 'ach', 'Actinidia31340' => 'ach', 'Actinidia32439' => 'ach', 'Actinidia32440' => 'ach', 'Actinidia32441' => 'ach', 'Ah.15g092440' => 'amhyb', 'AL3G21670' => 'aly', 'AL4G33370' => 'aly', 'AL5G34170' => 'aly', 'AL6G13850' => 'aly', 'Aqoxy1G01205' => 'aox', 'Aqoxy2G01818' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0B4MFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5H4H17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9CK4GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EEZ4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI9C9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Z3VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB2RRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PUMP6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2YH27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULT2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1SQAY' => 'arhy', 'AT2G37040' => 'ath', 'AT3G10340' => 'ath', 'AT3G53260' => 'ath', 'AT5G04230' => 'ath', 'ATR0048G051' => 'atr', 'ATR0598G039' => 'atr', 'ATR0598G058' => 'atr', 'ATR0598G114' => 'atr', 'ATR0763G117' => 'atr', 'Atru.chr12.710' => 'acertr', 'Atru.chr3.3599' => 'acertr', 'Atru.chr7.1656' => 'acertr', 'Atru.chr8.1402' => 'acertr', 'AUR62039879' => 'cqu', 'AUR62040467' => 'cqu', 'BcaB01g00295' => 'bca', 'BcaB01g03796' => 'bca', 'BcaB01g03798' => 'bca', 'BcaB02g07797' => 'bca', 'BcaB02g08531' => 'bca', 'BcaB02g09307' => 'bca', 'BcaB05g21767' => 'bca', 'BcaB05g21768' => 'bca', 'BcaB06g28973' => 'bca', 'BcaC02g07551' => 'bca', 'BcaC02g07552' => 'bca', 'BcaC02g07553' => 'bca', 'BcaC02g07556' => 'bca', 'BcaC02g09174' => 'bca', 'BcaC02g09175' => 'bca', 'BcaC02g11831' => 'bca', 'BcaC02g12836' => 'bca', 'BcaC03g12950' => 'bca', 'BcaC05g29476' => 'bca', 'BcaC07g39687' => 'bca', 'BcaC07g39688' => 'bca', 'BcaC07g39689' => 'bca', 'BcaNung04594' => 'bca', 'BcaNung06565' => 'bca', 'BolC2t06142H' => 'bol', 'BolC4t22683H' => 'bol', 'BolC4t25500H' => 'bol', 'BolC4t25539H' => 'bol', 'BolC4t26629H' => 'bol', 'BolC4t28059H' => 'bol', 'BolC5t34439H' => 'bol', 'BolC6t37294H' => 'bol', 'BolC8t50456H' => 'bol', 'BraA02t04805Z' => 'bra', 'BraA04t16324Z' => 'bra', 'BraA04t17217Z' => 'bra', 'BraA04t17220Z' => 'bra', 'BraA04t17221Z' => 'bra', 'BraA04t18313Z' => 'bra', 'BraA05t19846Z' => 'bra', 'BraA05t22672Z' => 'bra', 'BraA07t29836Z' => 'bra', 'BraA09t40092Z' => 'bra', 'C02p01850' => 'bna', 'C04p10910' => 'bna', 'C04p39320' => 'bna', 'C04p39330' => 'bna', 'C04p39690' => 'bna', 'C04p39700' => 'bna', 'C04p50310' => 'bna', 'C04p65660' => 'bna', 'C05p57840' => 'bna', 'C06p21090' => 'bna', 'C08p28490' => 'bna', 'CAN.G3578.1' => 'can', 'CAN.G363.12' => 'can', 'CAN.G363.13' => 'can', 'CAN.G363.14' => 'can', 'CAN.G363.7' => 'can', 'CAN.G363.8' => 'can', 'CAN.G509.12' => 'can', 'CAN.G694.92' => 'can', 'CAN.G806.3' => 'can', 'CANSAT56G4207' => 'cansat', 'CANSAT80G0523' => 'cansat', 'CANSAT80G0733' => 'cansat', 'CANSAT80G0924' => 'cansat', 'CANSAT80G1719' => 'cansat', 'CANSAT80G1948' => 'cansat', 'CANSAT80G2016' => 'cansat', 'CARHR084820' => 'chi', 'CARHR131540' => 'chi', 'CARHR289320' => 'chi', 'Carub.0003s0952' => 'cru', 'Carub.0004s1892' => 'cru', 'Carub.0005s1980' => 'cru', 'Ca_06487_v3' => 'car', 'Ca_08848_v3' => 'car', 'Ca_10557_v3' => 'car', 'Ca_11483_v3' => 'car', 'Ca_29940_v3' => 'car', 'CBR_g34530' => 'cbr', 'CBR_g57646' => 'cbr', 'Cc00_g20750' => 'ccan', 'Cc01_g10880' => 'ccan', 'Cc02_g11230' => 'ccan', 'Cc06_g03980' => 'ccan', 'CDE03G0013' => 'cde', 'CDE03G0030' => 'cde', 'CDE03G0232' => 'cde', 'CDE04G0744' => 'cde', 'CDE04G2639' => 'cde', 'CDE04G3431' => 'cde', 'CDE04G3557' => 'cde', 'CDE05G0703' => 'cde', 'CDE05G2606' => 'cde', 'CDE06G0268' => 'cde', 'CDE06G0737' => 'cde', 'CDE06G2597' => 'cde', 'CDE07G0082' => 'cde', 'CDE07G0918' => 'cde', 'CDE07G1529' => 'cde', 'CDE07G1531' => 'cde', 'Cfa001659' => 'cfa', 'Cfa001660' => 'cfa', 'Cfa003036' => 'cfa', 'Cfa003037' => 'cfa', 'Cfa003039' => 'cfa', 'Cfa017574' => 'cfa', 'Ciclev10010874m.g' => 'ccl', 'Ciclev10011134m.g' => 'ccl', 'Ciclev10011175m.g' => 'ccl', 'Ciclev10027912m.g' => 'ccl', 'Ciclev10027913m.g' => 'ccl', 'Ciclev10029946m.g' => 'ccl', 'Ciclev10030821m.g' => 'ccl', 'CiPaw.01G271300' => 'cil', 'CiPaw.02G173200' => 'cil', 'CiPaw.04G145900' => 'cil', 'CiPaw.04G146000' => 'cil', 'CiPaw.04G146100' => 'cil', 'CiPaw.09G174400' => 'cil', 'COL.COLO4_18142' => 'col', 'COL.COLO4_21739' => 'col', 'COL.COLO4_26994' => 'col', 'COL.COLO4_36662' => 'col', 'Cpa.g.c40737' => 'cpa', 'Cpa.g.sc2443.2' => 'cpa', 'Cpa.g.sc311.1' => 'cpa', 'Cpa.g.sc390.3' => 'cpa', 'Cpa.g.sc92.120' => 'cpa', 'CsaV3_1G040750' => 'csa', 'CsaV3_4G002290' => 'csa', 'CsaV3_4G002300' => 'csa', 'CsaV3_4G002310' => 'csa', 'CsaV3_4G002320' => 'csa', 'CsaV3_4G002330' => 'csa', 'CsaV3_6G014060' => 'csa', 'CsaV3_6G036550' => 'csa', 'CsaV3_6G039660' => 'csa', 'CsaV3_6G039670' => 'csa', 'CsaV3_6G039680' => 'csa', 'CsaV3_6G039690' => 'csa', 'CsaV3_6G039700' => 'csa', 'CsaV3_6G039710' => 'csa', 'CsaV3_6G039720' => 'csa', 'CSS0001442' => 'camsi', 'CSS0010367' => 'camsi', 'CSS0018870' => 'camsi', 'CSS0021474' => 'camsi', 'CSS0034802' => 'camsi', 'CSS0041448' => 'camsi', 'CSS0048281' => 'camsi', 'DCAR_014989' => 'dca', 'DCAR_017697' => 'dca', 'DCAR_020833' => 'dca', 'Dinv25385' => 'din', 'Dinv31309' => 'din', 'Dinv31310' => 'din', 'Dinv32720' => 'din', 'Dinv35765' => 'din', 'Dinv36424' => 'din', 'Dinv37296' => 'din', 'Dinv42363' => 'din', 'Duzib093G1956' => 'dzi', 'Duzib106G1669' => 'dzi', 'Duzib106G1705' => 'dzi', 'Duzib114G1045' => 'dzi', 'Duzib128G0518' => 'dzi', 'Duzib128G1271' => 'dzi', 'Duzib168G1200' => 'dzi', 'Duzib168G1693' => 'dzi', 'ECA232G3724' => 'eca', 'ECA233G3222' => 'eca', 'ECA233G6263' => 'eca', 'ECA236G2838' => 'eca', 'ECA238G0266' => 'eca', 'ECA238G0276' => 'eca', 'ECA238G0836' => 'eca', 'ECA238G3831' => 'eca', 'EL10Ac7g16597' => 'bvu', 'Eucgr.A01144' => 'egr', 'Eucgr.C03570' => 'egr', 'Eucgr.G02848' => 'egr', 'Eucgr.G02849' => 'egr', 'Eucgr.G02850' => 'egr', 'Eucgr.G02851' => 'egr', 'Eucgr.G02852' => 'egr', 'Eucgr.J00907' => 'egr', 'Eucgr.J01079' => 'egr', 'FAN01G2698' => 'fan', 'FAN02G0949' => 'fan', 'FAN03G3379' => 'fan', 'FAN06G1111' => 'fan', 'FAN06G2093' => 'fan', 'FAN09G1337' => 'fan', 'FAN10G2818' => 'fan', 'FAN10G2959' => 'fan', 'FAN14G2582' => 'fan', 'FvH4_6g16060' => 'fve', 'FvH4_7g19130' => 'fve', 'Glyma.02G309300' => 'gma', 'Glyma.03G181600' => 'gma', 'Glyma.03G181700' => 'gma', 'Glyma.10G058200' => 'gma', 'Glyma.10G209800' => 'gma', 'Glyma.13G145000' => 'gma', 'Glyma.19G182300' => 'gma', 'Glyma.20G180800' => 'gma', 'Gohir.A01G214800' => 'ghi', 'Gohir.A04G073300' => 'ghi', 'Gohir.A04G073400' => 'ghi', 'Gohir.A06G074800' => 'ghi', 'Gohir.A09G148900' => 'ghi', 'Gohir.A10G204700' => 'ghi', 'Gohir.A11G324340' => 'ghi', 'Gohir.D01G203300' => 'ghi', 'Gohir.D04G112140' => 'ghi', 'Gohir.D04G112180' => 'ghi', 'Gohir.D06G073600' => 'ghi', 'Gohir.D09G144700' => 'ghi', 'Gohir.D10G212700' => 'ghi', 'Gohir.D11G343500' => 'ghi', 'Gorai.002G248000' => 'gra', 'Gorai.006G166000' => 'gra', 'Gorai.007G373600' => 'gra', 'Gorai.007G373700' => 'gra', 'Gorai.009G416300' => 'gra', 'Gorai.009G416400' => 'gra', 'Gorai.010G086000' => 'gra', 'Gorai.011G238400' => 'gra', 'GSVIVG01006148001' => 'vvi', 'GSVIVG01015123001' => 'vvi', 'GSVIVG01015124001' => 'vvi', 'GSVIVG01015138001' => 'vvi', 'GSVIVG01015140001' => 'vvi', 'GSVIVG01016257001' => 'vvi', 'GSVIVG01024292001' => 'vvi', 'GSVIVG01024293001' => 'vvi', 'GSVIVG01024294001' => 'vvi', 'GSVIVG01024295001' => 'vvi', 'GSVIVG01024299001' => 'vvi', 'GSVIVG01024303001' => 'vvi', 'GSVIVG01024305001' => 'vvi', 'GSVIVG01024306001' => 'vvi', 'GSVIVG01024315001' => 'vvi', 'GSVIVG01025214001' => 'vvi', 'GSVIVG01025703001' => 'vvi', 'HanXRQChr02g0052151' => 'han', 'HanXRQChr02g0052221' => 'han', 'HanXRQChr02g0053471' => 'han', 'HanXRQChr07g0195401' => 'han', 'HanXRQChr09g0246871' => 'han', 'HanXRQChr13g0400161' => 'han', 'HanXRQChr13g0400171' => 'han', 'HanXRQChr13g0400191' => 'han', 'HanXRQChr14g0454551' => 'han', 'Haze_16872' => 'cav', 'Haze_16875' => 'cav', 'Haze_16876' => 'cav', 'Haze_20579' => 'cav', 'Haze_25962' => 'cav', 'Hma1.2p1_0205F.1_g087330' => 'hma', 'Hma1.2p1_0307F.1_g119900' => 'hma', 'Hma1.2p1_0366F.1_g136840' => 'hma', 'Hma1.2p1_1356F.1_g277860' => 'hma', 'Hma1.2p1_1458F.1_g284720' => 'hma', 'HPP92_007441' => 'vpl', 'HPP92_007442' => 'vpl', 'HPP92_007443' => 'vpl', 'HPP92_007444' => 'vpl', 'HPP92_007445' => 'vpl', 'HPP92_008607' => 'vpl', 'HPP92_021022' => 'vpl', 'HPP92_021023' => 'vpl', 'Hund12083' => 'sun', 'Hund20258' => 'sun', 'Lalb_Chr01g0004411' => 'lal', 'Lalb_Chr01g0004421' => 'lal', 'Lalb_Chr01g0018751' => 'lal', 'Lalb_Chr02g0142261' => 'lal', 'Lalb_Chr02g0156081' => 'lal', 'Lalb_Chr06g0171571' => 'lal', 'Lalb_Chr06g0171591' => 'lal', 'Lalb_Chr17g0349331' => 'lal', 'Lalb_Chr21g0306151' => 'lal', 'Lalb_Chr25g0289081' => 'lal', 'Lj1g0001296' => 'lja', 'Lj1g0004105' => 'lja', 'Lj1g0004110' => 'lja', 'Lj1g0024768' => 'lja', 'Lj2A1021G43' => 'lonja', 'Lj2A114T40' => 'lonja', 'Lj2A11G48' => 'lonja', 'Lj2C16G3' => 'lonja', 'Lj3A983T60' => 'lonja', 'Lj3g0012710' => 'lja', 'Lj3g0027359' => 'lja', 'Lj5g0006407' => 'lja', 'Lj5g0017962' => 'lja', 'Lj5g0021838' => 'lja', 'Lj6g0027600' => 'lja', 'LjContig00081g0013598' => 'lja', 'Lsat_1_v5_gn_2_106520' => 'lsa', 'Lsat_1_v5_gn_2_106540' => 'lsa', 'Lsat_1_v5_gn_2_42720' => 'lsa', 'Lsat_1_v5_gn_6_31000' => 'lsa', 'Lsat_1_v5_gn_6_31080' => 'lsa', 'Lsat_1_v5_gn_9_68321' => 'lsa', 'Manes.04G018000' => 'mes', 'Manes.07G098700' => 'mes', 'Manes.08G008400' => 'mes', 'Manes.09G063700' => 'mes', 'Manes.10G047500' => 'mes', 'Manes.16G098200' => 'mes', 'Mapoly0005s0086' => 'mpo', 'Mapoly0005s0089' => 'mpo', 'Mapoly0009s0173' => 'mpo', 'Mapoly0014s0211' => 'mpo', 'Mapoly0044s0114' => 'mpo', 'Mapoly0070s0061' => 'mpo', 'Mapoly0070s0065' => 'mpo', 'Mapoly0070s0066' => 'mpo', 'Mapoly0070s0068' => 'mpo', 'Mapoly0070s0069' => 'mpo', 'Mapoly0070s0071' => 'mpo', 'Mapoly0132s0049' => 'mpo', 'Mapoly0142s0036' => 'mpo', 'MBI03_g42616_MAGBIO' => 'mbi', 'MBI10_g06947_MAGBIO' => 'mbi', 'MBI18_g13608_MAGBIO' => 'mbi', 'MBI18_g13609_MAGBIO' => 'mbi', 'MBI18_g22096_MAGBIO' => 'mbi', 'MBI18_g31326_MAGBIO' => 'mbi', 'MBI18_g31327_MAGBIO' => 'mbi', 'MBI18_g39298_MAGBIO' => 'mbi', 'MBI19_g19953_MAGBIO' => 'mbi', 'MD01G1106900' => 'mdo', 'MD03G1121400' => 'mdo', 'MD03G1121500' => 'mdo', 'MD04G1096200' => 'mdo', 'MD07G1172700' => 'mdo', 'MD12G1116700' => 'mdo', 'Medtr1g064090' => 'mtr', 'Medtr1g094780' => 'mtr', 'Medtr2g094960' => 'mtr', 'Medtr2g095010' => 'mtr', 'Medtr5g098720' => 'mtr', 'Medtr7g101395' => 'mtr', 'Medtr7g101425' => 'mtr', 'MELO3C014222.2' => 'cme', 'MELO3C014223.2' => 'cme', 'MELO3C014224.2' => 'cme', 'MELO3C014225.2' => 'cme', 'MELO3C014226.2' => 'cme', 'MELO3C014227.2' => 'cme', 'MELO3C014228.2' => 'cme', 'MELO3C014229.2' => 'cme', 'MELO3C015503.2' => 'cme', 'MELO3C017809.2' => 'cme', 'MELO3C017810.2' => 'cme', 'MELO3C017811.2' => 'cme', 'MELO3C019809.2' => 'cme', 'MELO3C025786.2' => 'cme', 'Migut.F01977' => 'egut', 'Migut.J00542' => 'egut', 'Migut.L01685' => 'egut', 'MSTRG.26703' => 'ama', 'MSTRG.5746' => 'ama', 'Nitab4.5_0000071g0170' => 'nta', 'Nitab4.5_0000101g0270' => 'nta', 'Nitab4.5_0000582g0180' => 'nta', 'Nitab4.5_0000754g0260' => 'nta', 'Nitab4.5_0002130g0010' => 'nta', 'Nitab4.5_0005320g0020' => 'nta', 'Nitab4.5_0008883g0010' => 'nta', 'Nitab4.5_0012382g0010' => 'nta', 'Nitab4.5_0018680g0010' => 'nta', 'Nn1g05489' => 'nnu', 'Nn1g05490' => 'nnu', 'Nn1g05587' => 'nnu', 'Nn2g10960' => 'nnu', 'Nn2g11515' => 'nnu', 'Nn2g13724' => 'nnu', 'Nn3g19423' => 'nnu', 'Nn3g19424' => 'nnu', 'Nn3g20361' => 'nnu', 'Nn3g20362' => 'nnu', 'Nn5g29113' => 'nnu', 'Nn5g29114' => 'nnu', 'Nn6g35574' => 'nnu', 'Nn6g35575' => 'nnu', 'Nn7g36418' => 'nnu', 'Nn7g36876' => 'nnu', 'Nn7g37758' => 'nnu', 'Nn8g38741' => 'nnu', 'Nn8g41259' => 'nnu', 'Oeu014383.1' => 'oeu', 'Oeu015307.1' => 'oeu', 'Oeu036623.1' => 'oeu', 'Oeu045213.2' => 'oeu', 'Oeu050307.1' => 'oeu', 'Oeu055571.1' => 'oeu', 'Oeu055584.1' => 'oeu', 'Os02g0626400' => 'osa', 'Os02g0626600' => 'osa', 'Os02g0627100' => 'osa', 'Os04g0518100' => 'osa', 'Os04g0518400' => 'osa', 'Os05g0427400' => 'osa', 'Os08g0308300' => 'osa', 'Os10g0483700' => 'osa', 'Os11g0708900' => 'osa', 'Os12g0461050' => 'osa', 'Os12g0461300' => 'osa', 'Os12g0520200' => 'osa', 'Peaxi162Scf00123g00096' => 'pax', 'Peaxi162Scf00488g00074' => 'pax', 'Peaxi162Scf00858g00215' => 'pax', 'PGR044G1850' => 'pgr', 'PGR142G4008' => 'pgr', 'PGSC0003DMG400005492' => 'stu', 'PGSC0003DMG400019386' => 'stu', 'PGSC0003DMG400023458' => 'stu', 'PGSC0003DMG400031365' => 'stu', 'PGSC0003DMG400031457' => 'stu', 'PGSC0003DMG401021549' => 'stu', 'PGSC0003DMG401021564' => 'stu', 'PGSC0003DMG402021549' => 'stu', 'PGSC0003DMG402021564' => 'stu', 'Phvul.001G177700' => 'pvu', 'Phvul.001G177800' => 'pvu', 'Phvul.007G096100' => 'pvu', 'Phvul.007G096300' => 'pvu', 'Phvul.007G150500' => 'pvu', 'Phvul.008G289500' => 'pvu', 'Potri.006G126800' => 'ptr', 'Potri.008G038200' => 'ptr', 'Potri.010G224100' => 'ptr', 'Potri.010G224200' => 'ptr', 'Potri.016G091100' => 'ptr', 'Pp3c10_21810' => 'ppa', 'Pp3c11_3080' => 'ppa', 'Pp3c13_12190' => 'ppa', 'Pp3c13_9000' => 'ppa', 'Pp3c14_11870' => 'ppa', 'Pp3c17_7320' => 'ppa', 'Pp3c18_5430' => 'ppa', 'Pp3c19_13690' => 'ppa', 'Pp3c1_18680' => 'ppa', 'Pp3c1_18830' => 'ppa', 'Pp3c1_18940' => 'ppa', 'Pp3c20_4540' => 'ppa', 'Pp3c21_7640' => 'ppa', 'Pp3c21_7670' => 'ppa', 'Pp3c21_7680' => 'ppa', 'Pp3c22_17310' => 'ppa', 'Pp3c22_17320' => 'ppa', 'Pp3c22_17540' => 'ppa', 'Pp3c23_17690' => 'ppa', 'Pp3c23_4450' => 'ppa', 'Pp3c24_13110' => 'ppa', 'Pp3c25_2620' => 'ppa', 'Pp3c26_14610' => 'ppa', 'Pp3c26_2420' => 'ppa', 'Pp3c2_30610' => 'ppa', 'Pp3c2_32330' => 'ppa', 'Pp3c2_32410' => 'ppa', 'Pp3c3_1810' => 'ppa', 'Pp3c7_21960' => 'ppa', 'Pp3c7_24510' => 'ppa', 'Prupe.2G211800' => 'ppe', 'Prupe.6G104500' => 'ppe', 'Prupe.6G235400' => 'ppe', 'Psat0s4534g0080' => 'psa', 'Psat0s4806g0040' => 'psa', 'Psat0s4806g0080' => 'psa', 'Psat1g046920' => 'psa', 'Psat2g001960' => 'psa', 'Psat3g023040' => 'psa', 'Psat3g023120' => 'psa', 'Psat3g040960' => 'psa', 'Psat3g041040' => 'psa', 'Psat3g041080' => 'psa', 'Psat3g072160' => 'psa', 'Psat6g072360' => 'psa', 'Psat6g182520' => 'psa', 'PSO063G0499' => 'pso', 'PSO063G0868' => 'pso', 'PSO063G6937' => 'pso', 'PSO339G2188' => 'pso', 'PSO339G2284' => 'pso', 'PSO421G0737' => 'pso', 'PSO801G0780' => 'pso', 'QL02p061264' => 'qlo', 'QL02p061377' => 'qlo', 'QL07p044148' => 'qlo', 'QL07p044165' => 'qlo', 'QL08p055354' => 'qlo', 'QL93p2013_0042' => 'qlo', 'QL93p2013_0048' => 'qlo', 'RcHm_v2.0_Chr1g0363011' => 'rch', 'RcHm_v2.0_Chr3g0469861' => 'rch', 'RcHm_v2.0_Chr7g0212181' => 'rch', 'Rhsim03G0118900' => 'rsi', 'Rhsim03G0119000' => 'rsi', 'Rhsim03G0119100' => 'rsi', 'Rhsim04G0145800' => 'rsi', 'Rhsim13G0096300' => 'rsi', 'Sabra06G0099900' => 'sbr', 'Sabra08G0025700' => 'sbr', 'Sabra08G0025800' => 'sbr', 'Sabra08G0025900' => 'sbr', 'Sabra10G0173400' => 'sbr', 'Sabra16G0096400' => 'sbr', 'SalBow2G0227' => 'sbo', 'SalBow3G0858' => 'sbo', 'SalBow3G1710' => 'sbo', 'SalBow3G3417' => 'sbo', 'SalBow3G3731' => 'sbo', 'SalBow4G0717' => 'sbo', 'SalBow5G1955' => 'sbo', 'SalBow5G2236' => 'sbo', 'SalBow6G6448' => 'sbo', 'SalBow7G4181' => 'sbo', 'SalBow8G2765' => 'sbo', 'SalBow8G4126' => 'sbo', 'Sc02g0001760' => 'sci', 'Sc09g0006180' => 'sci', 'Sed0003527' => 'sed', 'Sed0007864' => 'sed', 'Sed0008292' => 'sed', 'Sed0012846' => 'sed', 'Sed0013151' => 'sed', 'Sed0015918' => 'sed', 'Sed0018325' => 'sed', 'Sed0018797' => 'sed', 'Sed0023091' => 'sed', 'Sed0025747' => 'sed', 'Sed0026131' => 'sed', 'Sed0026761' => 'sed', 'Sed0026887' => 'sed', 'Sed0027608' => 'sed', 'SEGI_00732' => 'sgi', 'SEGI_06616' => 'sgi', 'SEGI_12036' => 'sgi', 'SEGI_12427' => 'sgi', 'SEGI_18771' => 'sgi', 'SEGI_22248' => 'sgi', 'SEGI_33141' => 'sgi', 'SEGI_38051' => 'sgi', 'SGA_v2.0_scaffold126G33933' => 'sas', 'SGA_v2.0_scaffold35G14141' => 'sas', 'SGA_v2.0_scaffold452G51823' => 'sas', 'SHI12490' => 'shi', 'SMO268G0021' => 'smo', 'Solyc00g500095.1' => 'sly', 'Solyc00g500353.1' => 'sly', 'Solyc03g042560.3' => 'sly', 'Solyc03g071870.1' => 'sly', 'Solyc03g078270.2' => 'sly', 'Solyc03g078280.3' => 'sly', 'Solyc05g056170.3' => 'sly', 'Solyc09g007890.1' => 'sly', 'Solyc09g007900.4' => 'sly', 'Solyc09g007910.4' => 'sly', 'Solyc09g007920.4' => 'sly', 'Solyc10g011920.3' => 'sly', 'Solyc10g011925.1' => 'sly', 'Solyc10g011930.1' => 'sly', 'Solyc10g086180.2' => 'sly', 'Sopen03g007350' => 'spe', 'Sopen03g007390' => 'spe', 'Sopen03g021000' => 'spe', 'Sopen03g021010' => 'spe', 'Sopen05g034580' => 'spe', 'Sopen09g002720' => 'spe', 'Sopen09g002730' => 'spe', 'Sopen09g002740' => 'spe', 'Sopen09g002750' => 'spe', 'Sopen10g005710' => 'spe', 'Sopen10g035560' => 'spe', 'Sp3g08610' => 'spa', 'Sp4g19350' => 'spa', 'Sp5g09080' => 'spa', 'TAR369G0708' => 'tar', 'TAR624G1211' => 'tar', 'TAR633G2197' => 'tar', 'TAR636G3614' => 'tar', 'THA.LOC104805263' => 'tha', 'THA.LOC104806492' => 'tha', 'THA.LOC104816418' => 'tha', 'THA.LOC104823458' => 'tha', 'Thecc.05G062400' => 'tca', 'Thecc.09G343800' => 'tca', 'Thecc.10G076600' => 'tca', 'Thhalv10006288m.g' => 'esa', 'Thhalv10010153m.g' => 'esa', 'Thhalv10016314m.g' => 'esa', 'Thhalv10020168m.g' => 'esa', 'TPR.G11497' => 'tpr', 'TPR.G11622' => 'tpr', 'TPR.G16033' => 'tpr', 'TPR.G16051' => 'tpr', 'TPR.G16058' => 'tpr', 'TPR.G16065' => 'tpr', 'TPR.G1967' => 'tpr', 'TPR.G35217' => 'tpr', 'TPR.G35895' => 'tpr', 'TPR.G36469' => 'tpr', 'TPR.G9372' => 'tpr', 'TWI38G1740' => 'twi', 'TWI38G1917' => 'twi', 'TWI53G2138' => 'twi', 'TWI63G1305' => 'twi', 'TWI74G1356' => 'twi', 'TWI77G0988' => 'twi', 'unitig_26.g9224' => 'ugi', 'unitig_749.g14273' => 'ugi', 'unitig_749.g14274' => 'ugi', 'unitig_8.g4336' => 'ugi', 'unitig_8.g4337' => 'ugi', 'unitig_8.g4338' => 'ugi', 'vmacro03214' => 'vma', 'vmacro07061' => 'vma', 'vmacro08770' => 'vma', 'vmacro08771' => 'vma', 'vmacro08772' => 'vma', 'VMungo0647G0568' => 'vmu', 'VMungo0720G0549' => 'vmu', 'VMungo0720G2073' => 'vmu', 'VMungo0720G2437' => 'vmu', 'VMungo1383G0800' => 'vmu', 'VMungo1383G2201' => 'vmu', 'Zm00001eb000140' => 'zma', 'Zm00001eb050970' => 'zma', 'Zm00001eb077220' => 'zma', 'Zm00001eb077230' => 'zma', 'Zm00001eb135760' => 'zma', 'Zm00001eb144920' => 'zma', 'Zm00001eb185240' => 'zma', 'Zm00001eb185250' => 'zma', 'Zm00001eb185260' => 'zma', 'Zm00001eb205530' => 'zma', 'Zm00001eb228950' => 'zma', 'Zm00001eb247630' => 'zma', 'Zm00001eb247650' => 'zma', 'Zm00001eb247660' => 'zma', 'Zm00001eb336630' => 'zma', 'Zm00001eb363980' => 'zma', 'Zm00001eb363990' => 'zma', 'Zm00001eb364000' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D000844', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000844' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D000844', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '707', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D000844' ) ), 'genes' => array( 'A04p06200' => 'bna', 'A04p15880' => 'bna', 'A04p28310' => 'bna', 'A05p08780' => 'bna', 'A05p38810' => 'bna', 'A07p21490' => 'bna', 'A09p46290' => 'bna', 'Aa31LG3G2910' => 'aar', 'Aa31LG5G22310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4622' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5205' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.725' => 'aag', 'Actinidia06760' => 'ach', 'Actinidia07153' => 'ach', 'Actinidia13078' => 'ach', 'Actinidia22446' => 'ach', 'Actinidia24116' => 'ach', 'Actinidia31339' => 'ach', 'Actinidia31340' => 'ach', 'Actinidia32439' => 'ach', 'Actinidia32440' => 'ach', 'Actinidia32441' => 'ach', 'Ah.15g092440' => 'amhyb', 'AL3G21670' => 'aly', 'AL4G33370' => 'aly', 'AL5G34170' => 'aly', 'AL6G13850' => 'aly', 'Aqoxy1G01205' => 'aox', 'Aqoxy2G01818' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0B4MFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5H4H17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9CK4GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EEZ4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI9C9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Z3VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB2RRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PUMP6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2YH27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULT2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1SQAY' => 'arhy', 'AT2G37040' => 'ath', 'AT3G10340' => 'ath', 'AT3G53260' => 'ath', 'AT5G04230' => 'ath', 'ATR0048G051' => 'atr', 'ATR0598G039' => 'atr', 'ATR0598G058' => 'atr', 'ATR0598G114' => 'atr', 'ATR0763G117' => 'atr', 'Atru.chr12.710' => 'acertr', 'Atru.chr3.3599' => 'acertr', 'Atru.chr7.1656' => 'acertr', 'Atru.chr8.1402' => 'acertr', 'AUR62039879' => 'cqu', 'AUR62040467' => 'cqu', 'BcaB01g00295' => 'bca', 'BcaB01g03796' => 'bca', 'BcaB01g03798' => 'bca', 'BcaB02g07797' => 'bca', 'BcaB02g08531' => 'bca', 'BcaB02g09307' => 'bca', 'BcaB05g21767' => 'bca', 'BcaB05g21768' => 'bca', 'BcaB06g28973' => 'bca', 'BcaC02g07551' => 'bca', 'BcaC02g07552' => 'bca', 'BcaC02g07553' => 'bca', 'BcaC02g07556' => 'bca', 'BcaC02g09174' => 'bca', 'BcaC02g09175' => 'bca', 'BcaC02g11831' => 'bca', 'BcaC02g12836' => 'bca', 'BcaC03g12950' => 'bca', 'BcaC05g29476' => 'bca', 'BcaC07g39687' => 'bca', 'BcaC07g39688' => 'bca', 'BcaC07g39689' => 'bca', 'BcaNung04594' => 'bca', 'BcaNung06565' => 'bca', 'BolC2t06142H' => 'bol', 'BolC4t22683H' => 'bol', 'BolC4t25500H' => 'bol', 'BolC4t25539H' => 'bol', 'BolC4t26629H' => 'bol', 'BolC4t28059H' => 'bol', 'BolC5t34439H' => 'bol', 'BolC6t37294H' => 'bol', 'BolC8t50456H' => 'bol', 'BraA02t04805Z' => 'bra', 'BraA04t16324Z' => 'bra', 'BraA04t17217Z' => 'bra', 'BraA04t17220Z' => 'bra', 'BraA04t17221Z' => 'bra', 'BraA04t18313Z' => 'bra', 'BraA05t19846Z' => 'bra', 'BraA05t22672Z' => 'bra', 'BraA07t29836Z' => 'bra', 'BraA09t40092Z' => 'bra', 'C02p01850' => 'bna', 'C04p10910' => 'bna', 'C04p39320' => 'bna', 'C04p39330' => 'bna', 'C04p39690' => 'bna', 'C04p39700' => 'bna', 'C04p50310' => 'bna', 'C04p65660' => 'bna', 'C05p57840' => 'bna', 'C06p21090' => 'bna', 'C08p28490' => 'bna', 'CAN.G3578.1' => 'can', 'CAN.G363.12' => 'can', 'CAN.G363.13' => 'can', 'CAN.G363.14' => 'can', 'CAN.G363.7' => 'can', 'CAN.G363.8' => 'can', 'CAN.G509.12' => 'can', 'CAN.G694.92' => 'can', 'CAN.G806.3' => 'can', 'CANSAT56G4207' => 'cansat', 'CANSAT80G0523' => 'cansat', 'CANSAT80G0733' => 'cansat', 'CANSAT80G0924' => 'cansat', 'CANSAT80G1719' => 'cansat', 'CANSAT80G1948' => 'cansat', 'CANSAT80G2016' => 'cansat', 'CARHR084820' => 'chi', 'CARHR131540' => 'chi', 'CARHR289320' => 'chi', 'Carub.0003s0952' => 'cru', 'Carub.0004s1892' => 'cru', 'Carub.0005s1980' => 'cru', 'Ca_06487_v3' => 'car', 'Ca_08848_v3' => 'car', 'Ca_10557_v3' => 'car', 'Ca_11483_v3' => 'car', 'Ca_29940_v3' => 'car', 'CBR_g34530' => 'cbr', 'CBR_g57646' => 'cbr', 'Cc00_g20750' => 'ccan', 'Cc01_g10880' => 'ccan', 'Cc02_g11230' => 'ccan', 'Cc06_g03980' => 'ccan', 'CDE03G0013' => 'cde', 'CDE03G0030' => 'cde', 'CDE03G0232' => 'cde', 'CDE04G0744' => 'cde', 'CDE04G2639' => 'cde', 'CDE04G3431' => 'cde', 'CDE04G3557' => 'cde', 'CDE05G0703' => 'cde', 'CDE05G2606' => 'cde', 'CDE06G0268' => 'cde', 'CDE06G0737' => 'cde', 'CDE06G2597' => 'cde', 'CDE07G0082' => 'cde', 'CDE07G0918' => 'cde', 'CDE07G1529' => 'cde', 'CDE07G1531' => 'cde', 'Cfa001659' => 'cfa', 'Cfa001660' => 'cfa', 'Cfa003036' => 'cfa', 'Cfa003037' => 'cfa', 'Cfa003039' => 'cfa', 'Cfa017574' => 'cfa', 'Ciclev10010874m.g' => 'ccl', 'Ciclev10011134m.g' => 'ccl', 'Ciclev10011175m.g' => 'ccl', 'Ciclev10027912m.g' => 'ccl', 'Ciclev10027913m.g' => 'ccl', 'Ciclev10029946m.g' => 'ccl', 'Ciclev10030821m.g' => 'ccl', 'CiPaw.01G271300' => 'cil', 'CiPaw.02G173200' => 'cil', 'CiPaw.04G145900' => 'cil', 'CiPaw.04G146000' => 'cil', 'CiPaw.04G146100' => 'cil', 'CiPaw.09G174400' => 'cil', 'COL.COLO4_18142' => 'col', 'COL.COLO4_21739' => 'col', 'COL.COLO4_26994' => 'col', 'COL.COLO4_36662' => 'col', 'Cpa.g.c40737' => 'cpa', 'Cpa.g.sc2443.2' => 'cpa', 'Cpa.g.sc311.1' => 'cpa', 'Cpa.g.sc390.3' => 'cpa', 'Cpa.g.sc92.120' => 'cpa', 'CsaV3_1G040750' => 'csa', 'CsaV3_4G002290' => 'csa', 'CsaV3_4G002300' => 'csa', 'CsaV3_4G002310' => 'csa', 'CsaV3_4G002320' => 'csa', 'CsaV3_4G002330' => 'csa', 'CsaV3_6G014060' => 'csa', 'CsaV3_6G036550' => 'csa', 'CsaV3_6G039660' => 'csa', 'CsaV3_6G039670' => 'csa', 'CsaV3_6G039680' => 'csa', 'CsaV3_6G039690' => 'csa', 'CsaV3_6G039700' => 'csa', 'CsaV3_6G039710' => 'csa', 'CsaV3_6G039720' => 'csa', 'CSS0001442' => 'camsi', 'CSS0010367' => 'camsi', 'CSS0018870' => 'camsi', 'CSS0021474' => 'camsi', 'CSS0034802' => 'camsi', 'CSS0041448' => 'camsi', 'CSS0048281' => 'camsi', 'DCAR_014989' => 'dca', 'DCAR_017697' => 'dca', 'DCAR_020833' => 'dca', 'Dinv25385' => 'din', 'Dinv31309' => 'din', 'Dinv31310' => 'din', 'Dinv32720' => 'din', 'Dinv35765' => 'din', 'Dinv36424' => 'din', 'Dinv37296' => 'din', 'Dinv42363' => 'din', 'Duzib093G1956' => 'dzi', 'Duzib106G1669' => 'dzi', 'Duzib106G1705' => 'dzi', 'Duzib114G1045' => 'dzi', 'Duzib128G0518' => 'dzi', 'Duzib128G1271' => 'dzi', 'Duzib168G1200' => 'dzi', 'Duzib168G1693' => 'dzi', 'ECA232G3724' => 'eca', 'ECA233G3222' => 'eca', 'ECA233G6263' => 'eca', 'ECA236G2838' => 'eca', 'ECA238G0266' => 'eca', 'ECA238G0276' => 'eca', 'ECA238G0836' => 'eca', 'ECA238G3831' => 'eca', 'EL10Ac7g16597' => 'bvu', 'Eucgr.A01144' => 'egr', 'Eucgr.C03570' => 'egr', 'Eucgr.G02848' => 'egr', 'Eucgr.G02849' => 'egr', 'Eucgr.G02850' => 'egr', 'Eucgr.G02851' => 'egr', 'Eucgr.G02852' => 'egr', 'Eucgr.J00907' => 'egr', 'Eucgr.J01079' => 'egr', 'FAN01G2698' => 'fan', 'FAN02G0949' => 'fan', 'FAN03G3379' => 'fan', 'FAN06G1111' => 'fan', 'FAN06G2093' => 'fan', 'FAN09G1337' => 'fan', 'FAN10G2818' => 'fan', 'FAN10G2959' => 'fan', 'FAN14G2582' => 'fan', 'FvH4_6g16060' => 'fve', 'FvH4_7g19130' => 'fve', 'Glyma.02G309300' => 'gma', 'Glyma.03G181600' => 'gma', 'Glyma.03G181700' => 'gma', 'Glyma.10G058200' => 'gma', 'Glyma.10G209800' => 'gma', 'Glyma.13G145000' => 'gma', 'Glyma.19G182300' => 'gma', 'Glyma.20G180800' => 'gma', 'Gohir.A01G214800' => 'ghi', 'Gohir.A04G073300' => 'ghi', 'Gohir.A04G073400' => 'ghi', 'Gohir.A06G074800' => 'ghi', 'Gohir.A09G148900' => 'ghi', 'Gohir.A10G204700' => 'ghi', 'Gohir.A11G324340' => 'ghi', 'Gohir.D01G203300' => 'ghi', 'Gohir.D04G112140' => 'ghi', 'Gohir.D04G112180' => 'ghi', 'Gohir.D06G073600' => 'ghi', 'Gohir.D09G144700' => 'ghi', 'Gohir.D10G212700' => 'ghi', 'Gohir.D11G343500' => 'ghi', 'Gorai.002G248000' => 'gra', 'Gorai.006G166000' => 'gra', 'Gorai.007G373600' => 'gra', 'Gorai.007G373700' => 'gra', 'Gorai.009G416300' => 'gra', 'Gorai.009G416400' => 'gra', 'Gorai.010G086000' => 'gra', 'Gorai.011G238400' => 'gra', 'GSVIVG01006148001' => 'vvi', 'GSVIVG01015123001' => 'vvi', 'GSVIVG01015124001' => 'vvi', 'GSVIVG01015138001' => 'vvi', 'GSVIVG01015140001' => 'vvi', 'GSVIVG01016257001' => 'vvi', 'GSVIVG01024292001' => 'vvi', 'GSVIVG01024293001' => 'vvi', 'GSVIVG01024294001' => 'vvi', 'GSVIVG01024295001' => 'vvi', 'GSVIVG01024299001' => 'vvi', 'GSVIVG01024303001' => 'vvi', 'GSVIVG01024305001' => 'vvi', 'GSVIVG01024306001' => 'vvi', 'GSVIVG01024315001' => 'vvi', 'GSVIVG01025214001' => 'vvi', 'GSVIVG01025703001' => 'vvi', 'HanXRQChr02g0052151' => 'han', 'HanXRQChr02g0052221' => 'han', 'HanXRQChr02g0053471' => 'han', 'HanXRQChr07g0195401' => 'han', 'HanXRQChr09g0246871' => 'han', 'HanXRQChr13g0400161' => 'han', 'HanXRQChr13g0400171' => 'han', 'HanXRQChr13g0400191' => 'han', 'HanXRQChr14g0454551' => 'han', 'Haze_16872' => 'cav', 'Haze_16875' => 'cav', 'Haze_16876' => 'cav', 'Haze_20579' => 'cav', 'Haze_25962' => 'cav', 'Hma1.2p1_0205F.1_g087330' => 'hma', 'Hma1.2p1_0307F.1_g119900' => 'hma', 'Hma1.2p1_0366F.1_g136840' => 'hma', 'Hma1.2p1_1356F.1_g277860' => 'hma', 'Hma1.2p1_1458F.1_g284720' => 'hma', 'HPP92_007441' => 'vpl', 'HPP92_007442' => 'vpl', 'HPP92_007443' => 'vpl', 'HPP92_007444' => 'vpl', 'HPP92_007445' => 'vpl', 'HPP92_008607' => 'vpl', 'HPP92_021022' => 'vpl', 'HPP92_021023' => 'vpl', 'Hund12083' => 'sun', 'Hund20258' => 'sun', 'Lalb_Chr01g0004411' => 'lal', 'Lalb_Chr01g0004421' => 'lal', 'Lalb_Chr01g0018751' => 'lal', 'Lalb_Chr02g0142261' => 'lal', 'Lalb_Chr02g0156081' => 'lal', 'Lalb_Chr06g0171571' => 'lal', 'Lalb_Chr06g0171591' => 'lal', 'Lalb_Chr17g0349331' => 'lal', 'Lalb_Chr21g0306151' => 'lal', 'Lalb_Chr25g0289081' => 'lal', 'Lj1g0001296' => 'lja', 'Lj1g0004105' => 'lja', 'Lj1g0004110' => 'lja', 'Lj1g0024768' => 'lja', 'Lj2A1021G43' => 'lonja', 'Lj2A114T40' => 'lonja', 'Lj2A11G48' => 'lonja', 'Lj2C16G3' => 'lonja', 'Lj3A983T60' => 'lonja', 'Lj3g0012710' => 'lja', 'Lj3g0027359' => 'lja', 'Lj5g0006407' => 'lja', 'Lj5g0017962' => 'lja', 'Lj5g0021838' => 'lja', 'Lj6g0027600' => 'lja', 'LjContig00081g0013598' => 'lja', 'Lsat_1_v5_gn_2_106520' => 'lsa', 'Lsat_1_v5_gn_2_106540' => 'lsa', 'Lsat_1_v5_gn_2_42720' => 'lsa', 'Lsat_1_v5_gn_6_31000' => 'lsa', 'Lsat_1_v5_gn_6_31080' => 'lsa', 'Lsat_1_v5_gn_9_68321' => 'lsa', 'Manes.04G018000' => 'mes', 'Manes.07G098700' => 'mes', 'Manes.08G008400' => 'mes', 'Manes.09G063700' => 'mes', 'Manes.10G047500' => 'mes', 'Manes.16G098200' => 'mes', 'Mapoly0005s0086' => 'mpo', 'Mapoly0005s0089' => 'mpo', 'Mapoly0009s0173' => 'mpo', 'Mapoly0014s0211' => 'mpo', 'Mapoly0044s0114' => 'mpo', 'Mapoly0070s0061' => 'mpo', 'Mapoly0070s0065' => 'mpo', 'Mapoly0070s0066' => 'mpo', 'Mapoly0070s0068' => 'mpo', 'Mapoly0070s0069' => 'mpo', 'Mapoly0070s0071' => 'mpo', 'Mapoly0132s0049' => 'mpo', 'Mapoly0142s0036' => 'mpo', 'MBI03_g42616_MAGBIO' => 'mbi', 'MBI10_g06947_MAGBIO' => 'mbi', 'MBI18_g13608_MAGBIO' => 'mbi', 'MBI18_g13609_MAGBIO' => 'mbi', 'MBI18_g22096_MAGBIO' => 'mbi', 'MBI18_g31326_MAGBIO' => 'mbi', 'MBI18_g31327_MAGBIO' => 'mbi', 'MBI18_g39298_MAGBIO' => 'mbi', 'MBI19_g19953_MAGBIO' => 'mbi', 'MD01G1106900' => 'mdo', 'MD03G1121400' => 'mdo', 'MD03G1121500' => 'mdo', 'MD04G1096200' => 'mdo', 'MD07G1172700' => 'mdo', 'MD12G1116700' => 'mdo', 'Medtr1g064090' => 'mtr', 'Medtr1g094780' => 'mtr', 'Medtr2g094960' => 'mtr', 'Medtr2g095010' => 'mtr', 'Medtr5g098720' => 'mtr', 'Medtr7g101395' => 'mtr', 'Medtr7g101425' => 'mtr', 'MELO3C014222.2' => 'cme', 'MELO3C014223.2' => 'cme', 'MELO3C014224.2' => 'cme', 'MELO3C014225.2' => 'cme', 'MELO3C014226.2' => 'cme', 'MELO3C014227.2' => 'cme', 'MELO3C014228.2' => 'cme', 'MELO3C014229.2' => 'cme', 'MELO3C015503.2' => 'cme', 'MELO3C017809.2' => 'cme', 'MELO3C017810.2' => 'cme', 'MELO3C017811.2' => 'cme', 'MELO3C019809.2' => 'cme', 'MELO3C025786.2' => 'cme', 'Migut.F01977' => 'egut', 'Migut.J00542' => 'egut', 'Migut.L01685' => 'egut', 'MSTRG.26703' => 'ama', 'MSTRG.5746' => 'ama', 'Nitab4.5_0000071g0170' => 'nta', 'Nitab4.5_0000101g0270' => 'nta', 'Nitab4.5_0000582g0180' => 'nta', 'Nitab4.5_0000754g0260' => 'nta', 'Nitab4.5_0002130g0010' => 'nta', 'Nitab4.5_0005320g0020' => 'nta', 'Nitab4.5_0008883g0010' => 'nta', 'Nitab4.5_0012382g0010' => 'nta', 'Nitab4.5_0018680g0010' => 'nta', 'Nn1g05489' => 'nnu', 'Nn1g05490' => 'nnu', 'Nn1g05587' => 'nnu', 'Nn2g10960' => 'nnu', 'Nn2g11515' => 'nnu', 'Nn2g13724' => 'nnu', 'Nn3g19423' => 'nnu', 'Nn3g19424' => 'nnu', 'Nn3g20361' => 'nnu', 'Nn3g20362' => 'nnu', 'Nn5g29113' => 'nnu', 'Nn5g29114' => 'nnu', 'Nn6g35574' => 'nnu', 'Nn6g35575' => 'nnu', 'Nn7g36418' => 'nnu', 'Nn7g36876' => 'nnu', 'Nn7g37758' => 'nnu', 'Nn8g38741' => 'nnu', 'Nn8g41259' => 'nnu', 'Oeu014383.1' => 'oeu', 'Oeu015307.1' => 'oeu', 'Oeu036623.1' => 'oeu', 'Oeu045213.2' => 'oeu', 'Oeu050307.1' => 'oeu', 'Oeu055571.1' => 'oeu', 'Oeu055584.1' => 'oeu', 'Os02g0626400' => 'osa', 'Os02g0626600' => 'osa', 'Os02g0627100' => 'osa', 'Os04g0518100' => 'osa', 'Os04g0518400' => 'osa', 'Os05g0427400' => 'osa', 'Os08g0308300' => 'osa', 'Os10g0483700' => 'osa', 'Os11g0708900' => 'osa', 'Os12g0461050' => 'osa', 'Os12g0461300' => 'osa', 'Os12g0520200' => 'osa', 'Peaxi162Scf00123g00096' => 'pax', 'Peaxi162Scf00488g00074' => 'pax', 'Peaxi162Scf00858g00215' => 'pax', 'PGR044G1850' => 'pgr', 'PGR142G4008' => 'pgr', 'PGSC0003DMG400005492' => 'stu', 'PGSC0003DMG400019386' => 'stu', 'PGSC0003DMG400023458' => 'stu', 'PGSC0003DMG400031365' => 'stu', 'PGSC0003DMG400031457' => 'stu', 'PGSC0003DMG401021549' => 'stu', 'PGSC0003DMG401021564' => 'stu', 'PGSC0003DMG402021549' => 'stu', 'PGSC0003DMG402021564' => 'stu', 'Phvul.001G177700' => 'pvu', 'Phvul.001G177800' => 'pvu', 'Phvul.007G096100' => 'pvu', 'Phvul.007G096300' => 'pvu', 'Phvul.007G150500' => 'pvu', 'Phvul.008G289500' => 'pvu', 'Potri.006G126800' => 'ptr', 'Potri.008G038200' => 'ptr', 'Potri.010G224100' => 'ptr', 'Potri.010G224200' => 'ptr', 'Potri.016G091100' => 'ptr', 'Pp3c10_21810' => 'ppa', 'Pp3c11_3080' => 'ppa', 'Pp3c13_12190' => 'ppa', 'Pp3c13_9000' => 'ppa', 'Pp3c14_11870' => 'ppa', 'Pp3c17_7320' => 'ppa', 'Pp3c18_5430' => 'ppa', 'Pp3c19_13690' => 'ppa', 'Pp3c1_18680' => 'ppa', 'Pp3c1_18830' => 'ppa', 'Pp3c1_18940' => 'ppa', 'Pp3c20_4540' => 'ppa', 'Pp3c21_7640' => 'ppa', 'Pp3c21_7670' => 'ppa', 'Pp3c21_7680' => 'ppa', 'Pp3c22_17310' => 'ppa', 'Pp3c22_17320' => 'ppa', 'Pp3c22_17540' => 'ppa', 'Pp3c23_17690' => 'ppa', 'Pp3c23_4450' => 'ppa', 'Pp3c24_13110' => 'ppa', 'Pp3c25_2620' => 'ppa', 'Pp3c26_14610' => 'ppa', 'Pp3c26_2420' => 'ppa', 'Pp3c2_30610' => 'ppa', 'Pp3c2_32330' => 'ppa', 'Pp3c2_32410' => 'ppa', 'Pp3c3_1810' => 'ppa', 'Pp3c7_21960' => 'ppa', 'Pp3c7_24510' => 'ppa', 'Prupe.2G211800' => 'ppe', 'Prupe.6G104500' => 'ppe', 'Prupe.6G235400' => 'ppe', 'Psat0s4534g0080' => 'psa', 'Psat0s4806g0040' => 'psa', 'Psat0s4806g0080' => 'psa', 'Psat1g046920' => 'psa', 'Psat2g001960' => 'psa', 'Psat3g023040' => 'psa', 'Psat3g023120' => 'psa', 'Psat3g040960' => 'psa', 'Psat3g041040' => 'psa', 'Psat3g041080' => 'psa', 'Psat3g072160' => 'psa', 'Psat6g072360' => 'psa', 'Psat6g182520' => 'psa', 'PSO063G0499' => 'pso', 'PSO063G0868' => 'pso', 'PSO063G6937' => 'pso', 'PSO339G2188' => 'pso', 'PSO339G2284' => 'pso', 'PSO421G0737' => 'pso', 'PSO801G0780' => 'pso', 'QL02p061264' => 'qlo', 'QL02p061377' => 'qlo', 'QL07p044148' => 'qlo', 'QL07p044165' => 'qlo', 'QL08p055354' => 'qlo', 'QL93p2013_0042' => 'qlo', 'QL93p2013_0048' => 'qlo', 'RcHm_v2.0_Chr1g0363011' => 'rch', 'RcHm_v2.0_Chr3g0469861' => 'rch', 'RcHm_v2.0_Chr7g0212181' => 'rch', 'Rhsim03G0118900' => 'rsi', 'Rhsim03G0119000' => 'rsi', 'Rhsim03G0119100' => 'rsi', 'Rhsim04G0145800' => 'rsi', 'Rhsim13G0096300' => 'rsi', 'Sabra06G0099900' => 'sbr', 'Sabra08G0025700' => 'sbr', 'Sabra08G0025800' => 'sbr', 'Sabra08G0025900' => 'sbr', 'Sabra10G0173400' => 'sbr', 'Sabra16G0096400' => 'sbr', 'SalBow2G0227' => 'sbo', 'SalBow3G0858' => 'sbo', 'SalBow3G1710' => 'sbo', 'SalBow3G3417' => 'sbo', 'SalBow3G3731' => 'sbo', 'SalBow4G0717' => 'sbo', 'SalBow5G1955' => 'sbo', 'SalBow5G2236' => 'sbo', 'SalBow6G6448' => 'sbo', 'SalBow7G4181' => 'sbo', 'SalBow8G2765' => 'sbo', 'SalBow8G4126' => 'sbo', 'Sc02g0001760' => 'sci', 'Sc09g0006180' => 'sci', 'Sed0003527' => 'sed', 'Sed0007864' => 'sed', 'Sed0008292' => 'sed', 'Sed0012846' => 'sed', 'Sed0013151' => 'sed', 'Sed0015918' => 'sed', 'Sed0018325' => 'sed', 'Sed0018797' => 'sed', 'Sed0023091' => 'sed', 'Sed0025747' => 'sed', 'Sed0026131' => 'sed', 'Sed0026761' => 'sed', 'Sed0026887' => 'sed', 'Sed0027608' => 'sed', 'SEGI_00732' => 'sgi', 'SEGI_06616' => 'sgi', 'SEGI_12036' => 'sgi', 'SEGI_12427' => 'sgi', 'SEGI_18771' => 'sgi', 'SEGI_22248' => 'sgi', 'SEGI_33141' => 'sgi', 'SEGI_38051' => 'sgi', 'SGA_v2.0_scaffold126G33933' => 'sas', 'SGA_v2.0_scaffold35G14141' => 'sas', 'SGA_v2.0_scaffold452G51823' => 'sas', 'SHI12490' => 'shi', 'SMO268G0021' => 'smo', 'Solyc00g500095.1' => 'sly', 'Solyc00g500353.1' => 'sly', 'Solyc03g042560.3' => 'sly', 'Solyc03g071870.1' => 'sly', 'Solyc03g078270.2' => 'sly', 'Solyc03g078280.3' => 'sly', 'Solyc05g056170.3' => 'sly', 'Solyc09g007890.1' => 'sly', 'Solyc09g007900.4' => 'sly', 'Solyc09g007910.4' => 'sly', 'Solyc09g007920.4' => 'sly', 'Solyc10g011920.3' => 'sly', 'Solyc10g011925.1' => 'sly', 'Solyc10g011930.1' => 'sly', 'Solyc10g086180.2' => 'sly', 'Sopen03g007350' => 'spe', 'Sopen03g007390' => 'spe', 'Sopen03g021000' => 'spe', 'Sopen03g021010' => 'spe', 'Sopen05g034580' => 'spe', 'Sopen09g002720' => 'spe', 'Sopen09g002730' => 'spe', 'Sopen09g002740' => 'spe', 'Sopen09g002750' => 'spe', 'Sopen10g005710' => 'spe', 'Sopen10g035560' => 'spe', 'Sp3g08610' => 'spa', 'Sp4g19350' => 'spa', 'Sp5g09080' => 'spa', 'TAR369G0708' => 'tar', 'TAR624G1211' => 'tar', 'TAR633G2197' => 'tar', 'TAR636G3614' => 'tar', 'THA.LOC104805263' => 'tha', 'THA.LOC104806492' => 'tha', 'THA.LOC104816418' => 'tha', 'THA.LOC104823458' => 'tha', 'Thecc.05G062400' => 'tca', 'Thecc.09G343800' => 'tca', 'Thecc.10G076600' => 'tca', 'Thhalv10006288m.g' => 'esa', 'Thhalv10010153m.g' => 'esa', 'Thhalv10016314m.g' => 'esa', 'Thhalv10020168m.g' => 'esa', 'TPR.G11497' => 'tpr', 'TPR.G11622' => 'tpr', 'TPR.G16033' => 'tpr', 'TPR.G16051' => 'tpr', 'TPR.G16058' => 'tpr', 'TPR.G16065' => 'tpr', 'TPR.G1967' => 'tpr', 'TPR.G35217' => 'tpr', 'TPR.G35895' => 'tpr', 'TPR.G36469' => 'tpr', 'TPR.G9372' => 'tpr', 'TWI38G1740' => 'twi', 'TWI38G1917' => 'twi', 'TWI53G2138' => 'twi', 'TWI63G1305' => 'twi', 'TWI74G1356' => 'twi', 'TWI77G0988' => 'twi', 'unitig_26.g9224' => 'ugi', 'unitig_749.g14273' => 'ugi', 'unitig_749.g14274' => 'ugi', 'unitig_8.g4336' => 'ugi', 'unitig_8.g4337' => 'ugi', 'unitig_8.g4338' => 'ugi', 'vmacro03214' => 'vma', 'vmacro07061' => 'vma', 'vmacro08770' => 'vma', 'vmacro08771' => 'vma', 'vmacro08772' => 'vma', 'VMungo0647G0568' => 'vmu', 'VMungo0720G0549' => 'vmu', 'VMungo0720G2073' => 'vmu', 'VMungo0720G2437' => 'vmu', 'VMungo1383G0800' => 'vmu', 'VMungo1383G2201' => 'vmu', 'Zm00001eb000140' => 'zma', 'Zm00001eb050970' => 'zma', 'Zm00001eb077220' => 'zma', 'Zm00001eb077230' => 'zma', 'Zm00001eb135760' => 'zma', 'Zm00001eb144920' => 'zma', 'Zm00001eb185240' => 'zma', 'Zm00001eb185250' => 'zma', 'Zm00001eb185260' => 'zma', 'Zm00001eb205530' => 'zma', 'Zm00001eb228950' => 'zma', 'Zm00001eb247630' => 'zma', 'Zm00001eb247650' => 'zma', 'Zm00001eb247660' => 'zma', 'Zm00001eb336630' => 'zma', 'Zm00001eb363980' => 'zma', 'Zm00001eb363990' => 'zma', 'Zm00001eb364000' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D000844' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000844' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D000844' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D000844' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000844', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '707', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A04p06200' => 'bna', 'A04p15880' => 'bna', 'A04p28310' => 'bna', 'A05p08780' => 'bna', 'A05p38810' => 'bna', 'A07p21490' => 'bna', 'A09p46290' => 'bna', 'Aa31LG3G2910' => 'aar', 'Aa31LG5G22310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4622' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5205' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.725' => 'aag', 'Actinidia06760' => 'ach', 'Actinidia07153' => 'ach', 'Actinidia13078' => 'ach', 'Actinidia22446' => 'ach', 'Actinidia24116' => 'ach', 'Actinidia31339' => 'ach', 'Actinidia31340' => 'ach', 'Actinidia32439' => 'ach', 'Actinidia32440' => 'ach', 'Actinidia32441' => 'ach', 'Ah.15g092440' => 'amhyb', 'AL3G21670' => 'aly', 'AL4G33370' => 'aly', 'AL5G34170' => 'aly', 'AL6G13850' => 'aly', 'Aqoxy1G01205' => 'aox', 'Aqoxy2G01818' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0B4MFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5H4H17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9CK4GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EEZ4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI9C9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Z3VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB2RRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PUMP6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2YH27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULT2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1SQAY' => 'arhy', 'AT2G37040' => 'ath', 'AT3G10340' => 'ath', 'AT3G53260' => 'ath', 'AT5G04230' => 'ath', 'ATR0048G051' => 'atr', 'ATR0598G039' => 'atr', 'ATR0598G058' => 'atr', 'ATR0598G114' => 'atr', 'ATR0763G117' => 'atr', 'Atru.chr12.710' => 'acertr', 'Atru.chr3.3599' => 'acertr', 'Atru.chr7.1656' => 'acertr', 'Atru.chr8.1402' => 'acertr', 'AUR62039879' => 'cqu', 'AUR62040467' => 'cqu', 'BcaB01g00295' => 'bca', 'BcaB01g03796' => 'bca', 'BcaB01g03798' => 'bca', 'BcaB02g07797' => 'bca', 'BcaB02g08531' => 'bca', 'BcaB02g09307' => 'bca', 'BcaB05g21767' => 'bca', 'BcaB05g21768' => 'bca', 'BcaB06g28973' => 'bca', 'BcaC02g07551' => 'bca', 'BcaC02g07552' => 'bca', 'BcaC02g07553' => 'bca', 'BcaC02g07556' => 'bca', 'BcaC02g09174' => 'bca', 'BcaC02g09175' => 'bca', 'BcaC02g11831' => 'bca', 'BcaC02g12836' => 'bca', 'BcaC03g12950' => 'bca', 'BcaC05g29476' => 'bca', 'BcaC07g39687' => 'bca', 'BcaC07g39688' => 'bca', 'BcaC07g39689' => 'bca', 'BcaNung04594' => 'bca', 'BcaNung06565' => 'bca', 'BolC2t06142H' => 'bol', 'BolC4t22683H' => 'bol', 'BolC4t25500H' => 'bol', 'BolC4t25539H' => 'bol', 'BolC4t26629H' => 'bol', 'BolC4t28059H' => 'bol', 'BolC5t34439H' => 'bol', 'BolC6t37294H' => 'bol', 'BolC8t50456H' => 'bol', 'BraA02t04805Z' => 'bra', 'BraA04t16324Z' => 'bra', 'BraA04t17217Z' => 'bra', 'BraA04t17220Z' => 'bra', 'BraA04t17221Z' => 'bra', 'BraA04t18313Z' => 'bra', 'BraA05t19846Z' => 'bra', 'BraA05t22672Z' => 'bra', 'BraA07t29836Z' => 'bra', 'BraA09t40092Z' => 'bra', 'C02p01850' => 'bna', 'C04p10910' => 'bna', 'C04p39320' => 'bna', 'C04p39330' => 'bna', 'C04p39690' => 'bna', 'C04p39700' => 'bna', 'C04p50310' => 'bna', 'C04p65660' => 'bna', 'C05p57840' => 'bna', 'C06p21090' => 'bna', 'C08p28490' => 'bna', 'CAN.G3578.1' => 'can', 'CAN.G363.12' => 'can', 'CAN.G363.13' => 'can', 'CAN.G363.14' => 'can', 'CAN.G363.7' => 'can', 'CAN.G363.8' => 'can', 'CAN.G509.12' => 'can', 'CAN.G694.92' => 'can', 'CAN.G806.3' => 'can', 'CANSAT56G4207' => 'cansat', 'CANSAT80G0523' => 'cansat', 'CANSAT80G0733' => 'cansat', 'CANSAT80G0924' => 'cansat', 'CANSAT80G1719' => 'cansat', 'CANSAT80G1948' => 'cansat', 'CANSAT80G2016' => 'cansat', 'CARHR084820' => 'chi', 'CARHR131540' => 'chi', 'CARHR289320' => 'chi', 'Carub.0003s0952' => 'cru', 'Carub.0004s1892' => 'cru', 'Carub.0005s1980' => 'cru', 'Ca_06487_v3' => 'car', 'Ca_08848_v3' => 'car', 'Ca_10557_v3' => 'car', 'Ca_11483_v3' => 'car', 'Ca_29940_v3' => 'car', 'CBR_g34530' => 'cbr', 'CBR_g57646' => 'cbr', 'Cc00_g20750' => 'ccan', 'Cc01_g10880' => 'ccan', 'Cc02_g11230' => 'ccan', 'Cc06_g03980' => 'ccan', 'CDE03G0013' => 'cde', 'CDE03G0030' => 'cde', 'CDE03G0232' => 'cde', 'CDE04G0744' => 'cde', 'CDE04G2639' => 'cde', 'CDE04G3431' => 'cde', 'CDE04G3557' => 'cde', 'CDE05G0703' => 'cde', 'CDE05G2606' => 'cde', 'CDE06G0268' => 'cde', 'CDE06G0737' => 'cde', 'CDE06G2597' => 'cde', 'CDE07G0082' => 'cde', 'CDE07G0918' => 'cde', 'CDE07G1529' => 'cde', 'CDE07G1531' => 'cde', 'Cfa001659' => 'cfa', 'Cfa001660' => 'cfa', 'Cfa003036' => 'cfa', 'Cfa003037' => 'cfa', 'Cfa003039' => 'cfa', 'Cfa017574' => 'cfa', 'Ciclev10010874m.g' => 'ccl', 'Ciclev10011134m.g' => 'ccl', 'Ciclev10011175m.g' => 'ccl', 'Ciclev10027912m.g' => 'ccl', 'Ciclev10027913m.g' => 'ccl', 'Ciclev10029946m.g' => 'ccl', 'Ciclev10030821m.g' => 'ccl', 'CiPaw.01G271300' => 'cil', 'CiPaw.02G173200' => 'cil', 'CiPaw.04G145900' => 'cil', 'CiPaw.04G146000' => 'cil', 'CiPaw.04G146100' => 'cil', 'CiPaw.09G174400' => 'cil', 'COL.COLO4_18142' => 'col', 'COL.COLO4_21739' => 'col', 'COL.COLO4_26994' => 'col', 'COL.COLO4_36662' => 'col', 'Cpa.g.c40737' => 'cpa', 'Cpa.g.sc2443.2' => 'cpa', 'Cpa.g.sc311.1' => 'cpa', 'Cpa.g.sc390.3' => 'cpa', 'Cpa.g.sc92.120' => 'cpa', 'CsaV3_1G040750' => 'csa', 'CsaV3_4G002290' => 'csa', 'CsaV3_4G002300' => 'csa', 'CsaV3_4G002310' => 'csa', 'CsaV3_4G002320' => 'csa', 'CsaV3_4G002330' => 'csa', 'CsaV3_6G014060' => 'csa', 'CsaV3_6G036550' => 'csa', 'CsaV3_6G039660' => 'csa', 'CsaV3_6G039670' => 'csa', 'CsaV3_6G039680' => 'csa', 'CsaV3_6G039690' => 'csa', 'CsaV3_6G039700' => 'csa', 'CsaV3_6G039710' => 'csa', 'CsaV3_6G039720' => 'csa', 'CSS0001442' => 'camsi', 'CSS0010367' => 'camsi', 'CSS0018870' => 'camsi', 'CSS0021474' => 'camsi', 'CSS0034802' => 'camsi', 'CSS0041448' => 'camsi', 'CSS0048281' => 'camsi', 'DCAR_014989' => 'dca', 'DCAR_017697' => 'dca', 'DCAR_020833' => 'dca', 'Dinv25385' => 'din', 'Dinv31309' => 'din', 'Dinv31310' => 'din', 'Dinv32720' => 'din', 'Dinv35765' => 'din', 'Dinv36424' => 'din', 'Dinv37296' => 'din', 'Dinv42363' => 'din', 'Duzib093G1956' => 'dzi', 'Duzib106G1669' => 'dzi', 'Duzib106G1705' => 'dzi', 'Duzib114G1045' => 'dzi', 'Duzib128G0518' => 'dzi', 'Duzib128G1271' => 'dzi', 'Duzib168G1200' => 'dzi', 'Duzib168G1693' => 'dzi', 'ECA232G3724' => 'eca', 'ECA233G3222' => 'eca', 'ECA233G6263' => 'eca', 'ECA236G2838' => 'eca', 'ECA238G0266' => 'eca', 'ECA238G0276' => 'eca', 'ECA238G0836' => 'eca', 'ECA238G3831' => 'eca', 'EL10Ac7g16597' => 'bvu', 'Eucgr.A01144' => 'egr', 'Eucgr.C03570' => 'egr', 'Eucgr.G02848' => 'egr', 'Eucgr.G02849' => 'egr', 'Eucgr.G02850' => 'egr', 'Eucgr.G02851' => 'egr', 'Eucgr.G02852' => 'egr', 'Eucgr.J00907' => 'egr', 'Eucgr.J01079' => 'egr', 'FAN01G2698' => 'fan', 'FAN02G0949' => 'fan', 'FAN03G3379' => 'fan', 'FAN06G1111' => 'fan', 'FAN06G2093' => 'fan', 'FAN09G1337' => 'fan', 'FAN10G2818' => 'fan', 'FAN10G2959' => 'fan', 'FAN14G2582' => 'fan', 'FvH4_6g16060' => 'fve', 'FvH4_7g19130' => 'fve', 'Glyma.02G309300' => 'gma', 'Glyma.03G181600' => 'gma', 'Glyma.03G181700' => 'gma', 'Glyma.10G058200' => 'gma', 'Glyma.10G209800' => 'gma', 'Glyma.13G145000' => 'gma', 'Glyma.19G182300' => 'gma', 'Glyma.20G180800' => 'gma', 'Gohir.A01G214800' => 'ghi', 'Gohir.A04G073300' => 'ghi', 'Gohir.A04G073400' => 'ghi', 'Gohir.A06G074800' => 'ghi', 'Gohir.A09G148900' => 'ghi', 'Gohir.A10G204700' => 'ghi', 'Gohir.A11G324340' => 'ghi', 'Gohir.D01G203300' => 'ghi', 'Gohir.D04G112140' => 'ghi', 'Gohir.D04G112180' => 'ghi', 'Gohir.D06G073600' => 'ghi', 'Gohir.D09G144700' => 'ghi', 'Gohir.D10G212700' => 'ghi', 'Gohir.D11G343500' => 'ghi', 'Gorai.002G248000' => 'gra', 'Gorai.006G166000' => 'gra', 'Gorai.007G373600' => 'gra', 'Gorai.007G373700' => 'gra', 'Gorai.009G416300' => 'gra', 'Gorai.009G416400' => 'gra', 'Gorai.010G086000' => 'gra', 'Gorai.011G238400' => 'gra', 'GSVIVG01006148001' => 'vvi', 'GSVIVG01015123001' => 'vvi', 'GSVIVG01015124001' => 'vvi', 'GSVIVG01015138001' => 'vvi', 'GSVIVG01015140001' => 'vvi', 'GSVIVG01016257001' => 'vvi', 'GSVIVG01024292001' => 'vvi', 'GSVIVG01024293001' => 'vvi', 'GSVIVG01024294001' => 'vvi', 'GSVIVG01024295001' => 'vvi', 'GSVIVG01024299001' => 'vvi', 'GSVIVG01024303001' => 'vvi', 'GSVIVG01024305001' => 'vvi', 'GSVIVG01024306001' => 'vvi', 'GSVIVG01024315001' => 'vvi', 'GSVIVG01025214001' => 'vvi', 'GSVIVG01025703001' => 'vvi', 'HanXRQChr02g0052151' => 'han', 'HanXRQChr02g0052221' => 'han', 'HanXRQChr02g0053471' => 'han', 'HanXRQChr07g0195401' => 'han', 'HanXRQChr09g0246871' => 'han', 'HanXRQChr13g0400161' => 'han', 'HanXRQChr13g0400171' => 'han', 'HanXRQChr13g0400191' => 'han', 'HanXRQChr14g0454551' => 'han', 'Haze_16872' => 'cav', 'Haze_16875' => 'cav', 'Haze_16876' => 'cav', 'Haze_20579' => 'cav', 'Haze_25962' => 'cav', 'Hma1.2p1_0205F.1_g087330' => 'hma', 'Hma1.2p1_0307F.1_g119900' => 'hma', 'Hma1.2p1_0366F.1_g136840' => 'hma', 'Hma1.2p1_1356F.1_g277860' => 'hma', 'Hma1.2p1_1458F.1_g284720' => 'hma', 'HPP92_007441' => 'vpl', 'HPP92_007442' => 'vpl', 'HPP92_007443' => 'vpl', 'HPP92_007444' => 'vpl', 'HPP92_007445' => 'vpl', 'HPP92_008607' => 'vpl', 'HPP92_021022' => 'vpl', 'HPP92_021023' => 'vpl', 'Hund12083' => 'sun', 'Hund20258' => 'sun', 'Lalb_Chr01g0004411' => 'lal', 'Lalb_Chr01g0004421' => 'lal', 'Lalb_Chr01g0018751' => 'lal', 'Lalb_Chr02g0142261' => 'lal', 'Lalb_Chr02g0156081' => 'lal', 'Lalb_Chr06g0171571' => 'lal', 'Lalb_Chr06g0171591' => 'lal', 'Lalb_Chr17g0349331' => 'lal', 'Lalb_Chr21g0306151' => 'lal', 'Lalb_Chr25g0289081' => 'lal', 'Lj1g0001296' => 'lja', 'Lj1g0004105' => 'lja', 'Lj1g0004110' => 'lja', 'Lj1g0024768' => 'lja', 'Lj2A1021G43' => 'lonja', 'Lj2A114T40' => 'lonja', 'Lj2A11G48' => 'lonja', 'Lj2C16G3' => 'lonja', 'Lj3A983T60' => 'lonja', 'Lj3g0012710' => 'lja', 'Lj3g0027359' => 'lja', 'Lj5g0006407' => 'lja', 'Lj5g0017962' => 'lja', 'Lj5g0021838' => 'lja', 'Lj6g0027600' => 'lja', 'LjContig00081g0013598' => 'lja', 'Lsat_1_v5_gn_2_106520' => 'lsa', 'Lsat_1_v5_gn_2_106540' => 'lsa', 'Lsat_1_v5_gn_2_42720' => 'lsa', 'Lsat_1_v5_gn_6_31000' => 'lsa', 'Lsat_1_v5_gn_6_31080' => 'lsa', 'Lsat_1_v5_gn_9_68321' => 'lsa', 'Manes.04G018000' => 'mes', 'Manes.07G098700' => 'mes', 'Manes.08G008400' => 'mes', 'Manes.09G063700' => 'mes', 'Manes.10G047500' => 'mes', 'Manes.16G098200' => 'mes', 'Mapoly0005s0086' => 'mpo', 'Mapoly0005s0089' => 'mpo', 'Mapoly0009s0173' => 'mpo', 'Mapoly0014s0211' => 'mpo', 'Mapoly0044s0114' => 'mpo', 'Mapoly0070s0061' => 'mpo', 'Mapoly0070s0065' => 'mpo', 'Mapoly0070s0066' => 'mpo', 'Mapoly0070s0068' => 'mpo', 'Mapoly0070s0069' => 'mpo', 'Mapoly0070s0071' => 'mpo', 'Mapoly0132s0049' => 'mpo', 'Mapoly0142s0036' => 'mpo', 'MBI03_g42616_MAGBIO' => 'mbi', 'MBI10_g06947_MAGBIO' => 'mbi', 'MBI18_g13608_MAGBIO' => 'mbi', 'MBI18_g13609_MAGBIO' => 'mbi', 'MBI18_g22096_MAGBIO' => 'mbi', 'MBI18_g31326_MAGBIO' => 'mbi', 'MBI18_g31327_MAGBIO' => 'mbi', 'MBI18_g39298_MAGBIO' => 'mbi', 'MBI19_g19953_MAGBIO' => 'mbi', 'MD01G1106900' => 'mdo', 'MD03G1121400' => 'mdo', 'MD03G1121500' => 'mdo', 'MD04G1096200' => 'mdo', 'MD07G1172700' => 'mdo', 'MD12G1116700' => 'mdo', 'Medtr1g064090' => 'mtr', 'Medtr1g094780' => 'mtr', 'Medtr2g094960' => 'mtr', 'Medtr2g095010' => 'mtr', 'Medtr5g098720' => 'mtr', 'Medtr7g101395' => 'mtr', 'Medtr7g101425' => 'mtr', 'MELO3C014222.2' => 'cme', 'MELO3C014223.2' => 'cme', 'MELO3C014224.2' => 'cme', 'MELO3C014225.2' => 'cme', 'MELO3C014226.2' => 'cme', 'MELO3C014227.2' => 'cme', 'MELO3C014228.2' => 'cme', 'MELO3C014229.2' => 'cme', 'MELO3C015503.2' => 'cme', 'MELO3C017809.2' => 'cme', 'MELO3C017810.2' => 'cme', 'MELO3C017811.2' => 'cme', 'MELO3C019809.2' => 'cme', 'MELO3C025786.2' => 'cme', 'Migut.F01977' => 'egut', 'Migut.J00542' => 'egut', 'Migut.L01685' => 'egut', 'MSTRG.26703' => 'ama', 'MSTRG.5746' => 'ama', 'Nitab4.5_0000071g0170' => 'nta', 'Nitab4.5_0000101g0270' => 'nta', 'Nitab4.5_0000582g0180' => 'nta', 'Nitab4.5_0000754g0260' => 'nta', 'Nitab4.5_0002130g0010' => 'nta', 'Nitab4.5_0005320g0020' => 'nta', 'Nitab4.5_0008883g0010' => 'nta', 'Nitab4.5_0012382g0010' => 'nta', 'Nitab4.5_0018680g0010' => 'nta', 'Nn1g05489' => 'nnu', 'Nn1g05490' => 'nnu', 'Nn1g05587' => 'nnu', 'Nn2g10960' => 'nnu', 'Nn2g11515' => 'nnu', 'Nn2g13724' => 'nnu', 'Nn3g19423' => 'nnu', 'Nn3g19424' => 'nnu', 'Nn3g20361' => 'nnu', 'Nn3g20362' => 'nnu', 'Nn5g29113' => 'nnu', 'Nn5g29114' => 'nnu', 'Nn6g35574' => 'nnu', 'Nn6g35575' => 'nnu', 'Nn7g36418' => 'nnu', 'Nn7g36876' => 'nnu', 'Nn7g37758' => 'nnu', 'Nn8g38741' => 'nnu', 'Nn8g41259' => 'nnu', 'Oeu014383.1' => 'oeu', 'Oeu015307.1' => 'oeu', 'Oeu036623.1' => 'oeu', 'Oeu045213.2' => 'oeu', 'Oeu050307.1' => 'oeu', 'Oeu055571.1' => 'oeu', 'Oeu055584.1' => 'oeu', 'Os02g0626400' => 'osa', 'Os02g0626600' => 'osa', 'Os02g0627100' => 'osa', 'Os04g0518100' => 'osa', 'Os04g0518400' => 'osa', 'Os05g0427400' => 'osa', 'Os08g0308300' => 'osa', 'Os10g0483700' => 'osa', 'Os11g0708900' => 'osa', 'Os12g0461050' => 'osa', 'Os12g0461300' => 'osa', 'Os12g0520200' => 'osa', 'Peaxi162Scf00123g00096' => 'pax', 'Peaxi162Scf00488g00074' => 'pax', 'Peaxi162Scf00858g00215' => 'pax', 'PGR044G1850' => 'pgr', 'PGR142G4008' => 'pgr', 'PGSC0003DMG400005492' => 'stu', 'PGSC0003DMG400019386' => 'stu', 'PGSC0003DMG400023458' => 'stu', 'PGSC0003DMG400031365' => 'stu', 'PGSC0003DMG400031457' => 'stu', 'PGSC0003DMG401021549' => 'stu', 'PGSC0003DMG401021564' => 'stu', 'PGSC0003DMG402021549' => 'stu', 'PGSC0003DMG402021564' => 'stu', 'Phvul.001G177700' => 'pvu', 'Phvul.001G177800' => 'pvu', 'Phvul.007G096100' => 'pvu', 'Phvul.007G096300' => 'pvu', 'Phvul.007G150500' => 'pvu', 'Phvul.008G289500' => 'pvu', 'Potri.006G126800' => 'ptr', 'Potri.008G038200' => 'ptr', 'Potri.010G224100' => 'ptr', 'Potri.010G224200' => 'ptr', 'Potri.016G091100' => 'ptr', 'Pp3c10_21810' => 'ppa', 'Pp3c11_3080' => 'ppa', 'Pp3c13_12190' => 'ppa', 'Pp3c13_9000' => 'ppa', 'Pp3c14_11870' => 'ppa', 'Pp3c17_7320' => 'ppa', 'Pp3c18_5430' => 'ppa', 'Pp3c19_13690' => 'ppa', 'Pp3c1_18680' => 'ppa', 'Pp3c1_18830' => 'ppa', 'Pp3c1_18940' => 'ppa', 'Pp3c20_4540' => 'ppa', 'Pp3c21_7640' => 'ppa', 'Pp3c21_7670' => 'ppa', 'Pp3c21_7680' => 'ppa', 'Pp3c22_17310' => 'ppa', 'Pp3c22_17320' => 'ppa', 'Pp3c22_17540' => 'ppa', 'Pp3c23_17690' => 'ppa', 'Pp3c23_4450' => 'ppa', 'Pp3c24_13110' => 'ppa', 'Pp3c25_2620' => 'ppa', 'Pp3c26_14610' => 'ppa', 'Pp3c26_2420' => 'ppa', 'Pp3c2_30610' => 'ppa', 'Pp3c2_32330' => 'ppa', 'Pp3c2_32410' => 'ppa', 'Pp3c3_1810' => 'ppa', 'Pp3c7_21960' => 'ppa', 'Pp3c7_24510' => 'ppa', 'Prupe.2G211800' => 'ppe', 'Prupe.6G104500' => 'ppe', 'Prupe.6G235400' => 'ppe', 'Psat0s4534g0080' => 'psa', 'Psat0s4806g0040' => 'psa', 'Psat0s4806g0080' => 'psa', 'Psat1g046920' => 'psa', 'Psat2g001960' => 'psa', 'Psat3g023040' => 'psa', 'Psat3g023120' => 'psa', 'Psat3g040960' => 'psa', 'Psat3g041040' => 'psa', 'Psat3g041080' => 'psa', 'Psat3g072160' => 'psa', 'Psat6g072360' => 'psa', 'Psat6g182520' => 'psa', 'PSO063G0499' => 'pso', 'PSO063G0868' => 'pso', 'PSO063G6937' => 'pso', 'PSO339G2188' => 'pso', 'PSO339G2284' => 'pso', 'PSO421G0737' => 'pso', 'PSO801G0780' => 'pso', 'QL02p061264' => 'qlo', 'QL02p061377' => 'qlo', 'QL07p044148' => 'qlo', 'QL07p044165' => 'qlo', 'QL08p055354' => 'qlo', 'QL93p2013_0042' => 'qlo', 'QL93p2013_0048' => 'qlo', 'RcHm_v2.0_Chr1g0363011' => 'rch', 'RcHm_v2.0_Chr3g0469861' => 'rch', 'RcHm_v2.0_Chr7g0212181' => 'rch', 'Rhsim03G0118900' => 'rsi', 'Rhsim03G0119000' => 'rsi', 'Rhsim03G0119100' => 'rsi', 'Rhsim04G0145800' => 'rsi', 'Rhsim13G0096300' => 'rsi', 'Sabra06G0099900' => 'sbr', 'Sabra08G0025700' => 'sbr', 'Sabra08G0025800' => 'sbr', 'Sabra08G0025900' => 'sbr', 'Sabra10G0173400' => 'sbr', 'Sabra16G0096400' => 'sbr', 'SalBow2G0227' => 'sbo', 'SalBow3G0858' => 'sbo', 'SalBow3G1710' => 'sbo', 'SalBow3G3417' => 'sbo', 'SalBow3G3731' => 'sbo', 'SalBow4G0717' => 'sbo', 'SalBow5G1955' => 'sbo', 'SalBow5G2236' => 'sbo', 'SalBow6G6448' => 'sbo', 'SalBow7G4181' => 'sbo', 'SalBow8G2765' => 'sbo', 'SalBow8G4126' => 'sbo', 'Sc02g0001760' => 'sci', 'Sc09g0006180' => 'sci', 'Sed0003527' => 'sed', 'Sed0007864' => 'sed', 'Sed0008292' => 'sed', 'Sed0012846' => 'sed', 'Sed0013151' => 'sed', 'Sed0015918' => 'sed', 'Sed0018325' => 'sed', 'Sed0018797' => 'sed', 'Sed0023091' => 'sed', 'Sed0025747' => 'sed', 'Sed0026131' => 'sed', 'Sed0026761' => 'sed', 'Sed0026887' => 'sed', 'Sed0027608' => 'sed', 'SEGI_00732' => 'sgi', 'SEGI_06616' => 'sgi', 'SEGI_12036' => 'sgi', 'SEGI_12427' => 'sgi', 'SEGI_18771' => 'sgi', 'SEGI_22248' => 'sgi', 'SEGI_33141' => 'sgi', 'SEGI_38051' => 'sgi', 'SGA_v2.0_scaffold126G33933' => 'sas', 'SGA_v2.0_scaffold35G14141' => 'sas', 'SGA_v2.0_scaffold452G51823' => 'sas', 'SHI12490' => 'shi', 'SMO268G0021' => 'smo', 'Solyc00g500095.1' => 'sly', 'Solyc00g500353.1' => 'sly', 'Solyc03g042560.3' => 'sly', 'Solyc03g071870.1' => 'sly', 'Solyc03g078270.2' => 'sly', 'Solyc03g078280.3' => 'sly', 'Solyc05g056170.3' => 'sly', 'Solyc09g007890.1' => 'sly', 'Solyc09g007900.4' => 'sly', 'Solyc09g007910.4' => 'sly', 'Solyc09g007920.4' => 'sly', 'Solyc10g011920.3' => 'sly', 'Solyc10g011925.1' => 'sly', 'Solyc10g011930.1' => 'sly', 'Solyc10g086180.2' => 'sly', 'Sopen03g007350' => 'spe', 'Sopen03g007390' => 'spe', 'Sopen03g021000' => 'spe', 'Sopen03g021010' => 'spe', 'Sopen05g034580' => 'spe', 'Sopen09g002720' => 'spe', 'Sopen09g002730' => 'spe', 'Sopen09g002740' => 'spe', 'Sopen09g002750' => 'spe', 'Sopen10g005710' => 'spe', 'Sopen10g035560' => 'spe', 'Sp3g08610' => 'spa', 'Sp4g19350' => 'spa', 'Sp5g09080' => 'spa', 'TAR369G0708' => 'tar', 'TAR624G1211' => 'tar', 'TAR633G2197' => 'tar', 'TAR636G3614' => 'tar', 'THA.LOC104805263' => 'tha', 'THA.LOC104806492' => 'tha', 'THA.LOC104816418' => 'tha', 'THA.LOC104823458' => 'tha', 'Thecc.05G062400' => 'tca', 'Thecc.09G343800' => 'tca', 'Thecc.10G076600' => 'tca', 'Thhalv10006288m.g' => 'esa', 'Thhalv10010153m.g' => 'esa', 'Thhalv10016314m.g' => 'esa', 'Thhalv10020168m.g' => 'esa', 'TPR.G11497' => 'tpr', 'TPR.G11622' => 'tpr', 'TPR.G16033' => 'tpr', 'TPR.G16051' => 'tpr', 'TPR.G16058' => 'tpr', 'TPR.G16065' => 'tpr', 'TPR.G1967' => 'tpr', 'TPR.G35217' => 'tpr', 'TPR.G35895' => 'tpr', 'TPR.G36469' => 'tpr', 'TPR.G9372' => 'tpr', 'TWI38G1740' => 'twi', 'TWI38G1917' => 'twi', 'TWI53G2138' => 'twi', 'TWI63G1305' => 'twi', 'TWI74G1356' => 'twi', 'TWI77G0988' => 'twi', 'unitig_26.g9224' => 'ugi', 'unitig_749.g14273' => 'ugi', 'unitig_749.g14274' => 'ugi', 'unitig_8.g4336' => 'ugi', 'unitig_8.g4337' => 'ugi', 'unitig_8.g4338' => 'ugi', 'vmacro03214' => 'vma', 'vmacro07061' => 'vma', 'vmacro08770' => 'vma', 'vmacro08771' => 'vma', 'vmacro08772' => 'vma', 'VMungo0647G0568' => 'vmu', 'VMungo0720G0549' => 'vmu', 'VMungo0720G2073' => 'vmu', 'VMungo0720G2437' => 'vmu', 'VMungo1383G0800' => 'vmu', 'VMungo1383G2201' => 'vmu', 'Zm00001eb000140' => 'zma', 'Zm00001eb050970' => 'zma', 'Zm00001eb077220' => 'zma', 'Zm00001eb077230' => 'zma', 'Zm00001eb135760' => 'zma', 'Zm00001eb144920' => 'zma', 'Zm00001eb185240' => 'zma', 'Zm00001eb185250' => 'zma', 'Zm00001eb185260' => 'zma', 'Zm00001eb205530' => 'zma', 'Zm00001eb228950' => 'zma', 'Zm00001eb247630' => 'zma', 'Zm00001eb247650' => 'zma', 'Zm00001eb247660' => 'zma', 'Zm00001eb336630' => 'zma', 'Zm00001eb363980' => 'zma', 'Zm00001eb363990' => 'zma', 'Zm00001eb364000' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D000844', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000844' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D000844', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '707', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D000844' ) ), 'genes' => array( 'A04p06200' => 'bna', 'A04p15880' => 'bna', 'A04p28310' => 'bna', 'A05p08780' => 'bna', 'A05p38810' => 'bna', 'A07p21490' => 'bna', 'A09p46290' => 'bna', 'Aa31LG3G2910' => 'aar', 'Aa31LG5G22310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4622' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5205' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.725' => 'aag', 'Actinidia06760' => 'ach', 'Actinidia07153' => 'ach', 'Actinidia13078' => 'ach', 'Actinidia22446' => 'ach', 'Actinidia24116' => 'ach', 'Actinidia31339' => 'ach', 'Actinidia31340' => 'ach', 'Actinidia32439' => 'ach', 'Actinidia32440' => 'ach', 'Actinidia32441' => 'ach', 'Ah.15g092440' => 'amhyb', 'AL3G21670' => 'aly', 'AL4G33370' => 'aly', 'AL5G34170' => 'aly', 'AL6G13850' => 'aly', 'Aqoxy1G01205' => 'aox', 'Aqoxy2G01818' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0B4MFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5H4H17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9CK4GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EEZ4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI9C9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Z3VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB2RRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PUMP6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2YH27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULT2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1SQAY' => 'arhy', 'AT2G37040' => 'ath', 'AT3G10340' => 'ath', 'AT3G53260' => 'ath', 'AT5G04230' => 'ath', 'ATR0048G051' => 'atr', 'ATR0598G039' => 'atr', 'ATR0598G058' => 'atr', 'ATR0598G114' => 'atr', 'ATR0763G117' => 'atr', 'Atru.chr12.710' => 'acertr', 'Atru.chr3.3599' => 'acertr', 'Atru.chr7.1656' => 'acertr', 'Atru.chr8.1402' => 'acertr', 'AUR62039879' => 'cqu', 'AUR62040467' => 'cqu', 'BcaB01g00295' => 'bca', 'BcaB01g03796' => 'bca', 'BcaB01g03798' => 'bca', 'BcaB02g07797' => 'bca', 'BcaB02g08531' => 'bca', 'BcaB02g09307' => 'bca', 'BcaB05g21767' => 'bca', 'BcaB05g21768' => 'bca', 'BcaB06g28973' => 'bca', 'BcaC02g07551' => 'bca', 'BcaC02g07552' => 'bca', 'BcaC02g07553' => 'bca', 'BcaC02g07556' => 'bca', 'BcaC02g09174' => 'bca', 'BcaC02g09175' => 'bca', 'BcaC02g11831' => 'bca', 'BcaC02g12836' => 'bca', 'BcaC03g12950' => 'bca', 'BcaC05g29476' => 'bca', 'BcaC07g39687' => 'bca', 'BcaC07g39688' => 'bca', 'BcaC07g39689' => 'bca', 'BcaNung04594' => 'bca', 'BcaNung06565' => 'bca', 'BolC2t06142H' => 'bol', 'BolC4t22683H' => 'bol', 'BolC4t25500H' => 'bol', 'BolC4t25539H' => 'bol', 'BolC4t26629H' => 'bol', 'BolC4t28059H' => 'bol', 'BolC5t34439H' => 'bol', 'BolC6t37294H' => 'bol', 'BolC8t50456H' => 'bol', 'BraA02t04805Z' => 'bra', 'BraA04t16324Z' => 'bra', 'BraA04t17217Z' => 'bra', 'BraA04t17220Z' => 'bra', 'BraA04t17221Z' => 'bra', 'BraA04t18313Z' => 'bra', 'BraA05t19846Z' => 'bra', 'BraA05t22672Z' => 'bra', 'BraA07t29836Z' => 'bra', 'BraA09t40092Z' => 'bra', 'C02p01850' => 'bna', 'C04p10910' => 'bna', 'C04p39320' => 'bna', 'C04p39330' => 'bna', 'C04p39690' => 'bna', 'C04p39700' => 'bna', 'C04p50310' => 'bna', 'C04p65660' => 'bna', 'C05p57840' => 'bna', 'C06p21090' => 'bna', 'C08p28490' => 'bna', 'CAN.G3578.1' => 'can', 'CAN.G363.12' => 'can', 'CAN.G363.13' => 'can', 'CAN.G363.14' => 'can', 'CAN.G363.7' => 'can', 'CAN.G363.8' => 'can', 'CAN.G509.12' => 'can', 'CAN.G694.92' => 'can', 'CAN.G806.3' => 'can', 'CANSAT56G4207' => 'cansat', 'CANSAT80G0523' => 'cansat', 'CANSAT80G0733' => 'cansat', 'CANSAT80G0924' => 'cansat', 'CANSAT80G1719' => 'cansat', 'CANSAT80G1948' => 'cansat', 'CANSAT80G2016' => 'cansat', 'CARHR084820' => 'chi', 'CARHR131540' => 'chi', 'CARHR289320' => 'chi', 'Carub.0003s0952' => 'cru', 'Carub.0004s1892' => 'cru', 'Carub.0005s1980' => 'cru', 'Ca_06487_v3' => 'car', 'Ca_08848_v3' => 'car', 'Ca_10557_v3' => 'car', 'Ca_11483_v3' => 'car', 'Ca_29940_v3' => 'car', 'CBR_g34530' => 'cbr', 'CBR_g57646' => 'cbr', 'Cc00_g20750' => 'ccan', 'Cc01_g10880' => 'ccan', 'Cc02_g11230' => 'ccan', 'Cc06_g03980' => 'ccan', 'CDE03G0013' => 'cde', 'CDE03G0030' => 'cde', 'CDE03G0232' => 'cde', 'CDE04G0744' => 'cde', 'CDE04G2639' => 'cde', 'CDE04G3431' => 'cde', 'CDE04G3557' => 'cde', 'CDE05G0703' => 'cde', 'CDE05G2606' => 'cde', 'CDE06G0268' => 'cde', 'CDE06G0737' => 'cde', 'CDE06G2597' => 'cde', 'CDE07G0082' => 'cde', 'CDE07G0918' => 'cde', 'CDE07G1529' => 'cde', 'CDE07G1531' => 'cde', 'Cfa001659' => 'cfa', 'Cfa001660' => 'cfa', 'Cfa003036' => 'cfa', 'Cfa003037' => 'cfa', 'Cfa003039' => 'cfa', 'Cfa017574' => 'cfa', 'Ciclev10010874m.g' => 'ccl', 'Ciclev10011134m.g' => 'ccl', 'Ciclev10011175m.g' => 'ccl', 'Ciclev10027912m.g' => 'ccl', 'Ciclev10027913m.g' => 'ccl', 'Ciclev10029946m.g' => 'ccl', 'Ciclev10030821m.g' => 'ccl', 'CiPaw.01G271300' => 'cil', 'CiPaw.02G173200' => 'cil', 'CiPaw.04G145900' => 'cil', 'CiPaw.04G146000' => 'cil', 'CiPaw.04G146100' => 'cil', 'CiPaw.09G174400' => 'cil', 'COL.COLO4_18142' => 'col', 'COL.COLO4_21739' => 'col', 'COL.COLO4_26994' => 'col', 'COL.COLO4_36662' => 'col', 'Cpa.g.c40737' => 'cpa', 'Cpa.g.sc2443.2' => 'cpa', 'Cpa.g.sc311.1' => 'cpa', 'Cpa.g.sc390.3' => 'cpa', 'Cpa.g.sc92.120' => 'cpa', 'CsaV3_1G040750' => 'csa', 'CsaV3_4G002290' => 'csa', 'CsaV3_4G002300' => 'csa', 'CsaV3_4G002310' => 'csa', 'CsaV3_4G002320' => 'csa', 'CsaV3_4G002330' => 'csa', 'CsaV3_6G014060' => 'csa', 'CsaV3_6G036550' => 'csa', 'CsaV3_6G039660' => 'csa', 'CsaV3_6G039670' => 'csa', 'CsaV3_6G039680' => 'csa', 'CsaV3_6G039690' => 'csa', 'CsaV3_6G039700' => 'csa', 'CsaV3_6G039710' => 'csa', 'CsaV3_6G039720' => 'csa', 'CSS0001442' => 'camsi', 'CSS0010367' => 'camsi', 'CSS0018870' => 'camsi', 'CSS0021474' => 'camsi', 'CSS0034802' => 'camsi', 'CSS0041448' => 'camsi', 'CSS0048281' => 'camsi', 'DCAR_014989' => 'dca', 'DCAR_017697' => 'dca', 'DCAR_020833' => 'dca', 'Dinv25385' => 'din', 'Dinv31309' => 'din', 'Dinv31310' => 'din', 'Dinv32720' => 'din', 'Dinv35765' => 'din', 'Dinv36424' => 'din', 'Dinv37296' => 'din', 'Dinv42363' => 'din', 'Duzib093G1956' => 'dzi', 'Duzib106G1669' => 'dzi', 'Duzib106G1705' => 'dzi', 'Duzib114G1045' => 'dzi', 'Duzib128G0518' => 'dzi', 'Duzib128G1271' => 'dzi', 'Duzib168G1200' => 'dzi', 'Duzib168G1693' => 'dzi', 'ECA232G3724' => 'eca', 'ECA233G3222' => 'eca', 'ECA233G6263' => 'eca', 'ECA236G2838' => 'eca', 'ECA238G0266' => 'eca', 'ECA238G0276' => 'eca', 'ECA238G0836' => 'eca', 'ECA238G3831' => 'eca', 'EL10Ac7g16597' => 'bvu', 'Eucgr.A01144' => 'egr', 'Eucgr.C03570' => 'egr', 'Eucgr.G02848' => 'egr', 'Eucgr.G02849' => 'egr', 'Eucgr.G02850' => 'egr', 'Eucgr.G02851' => 'egr', 'Eucgr.G02852' => 'egr', 'Eucgr.J00907' => 'egr', 'Eucgr.J01079' => 'egr', 'FAN01G2698' => 'fan', 'FAN02G0949' => 'fan', 'FAN03G3379' => 'fan', 'FAN06G1111' => 'fan', 'FAN06G2093' => 'fan', 'FAN09G1337' => 'fan', 'FAN10G2818' => 'fan', 'FAN10G2959' => 'fan', 'FAN14G2582' => 'fan', 'FvH4_6g16060' => 'fve', 'FvH4_7g19130' => 'fve', 'Glyma.02G309300' => 'gma', 'Glyma.03G181600' => 'gma', 'Glyma.03G181700' => 'gma', 'Glyma.10G058200' => 'gma', 'Glyma.10G209800' => 'gma', 'Glyma.13G145000' => 'gma', 'Glyma.19G182300' => 'gma', 'Glyma.20G180800' => 'gma', 'Gohir.A01G214800' => 'ghi', 'Gohir.A04G073300' => 'ghi', 'Gohir.A04G073400' => 'ghi', 'Gohir.A06G074800' => 'ghi', 'Gohir.A09G148900' => 'ghi', 'Gohir.A10G204700' => 'ghi', 'Gohir.A11G324340' => 'ghi', 'Gohir.D01G203300' => 'ghi', 'Gohir.D04G112140' => 'ghi', 'Gohir.D04G112180' => 'ghi', 'Gohir.D06G073600' => 'ghi', 'Gohir.D09G144700' => 'ghi', 'Gohir.D10G212700' => 'ghi', 'Gohir.D11G343500' => 'ghi', 'Gorai.002G248000' => 'gra', 'Gorai.006G166000' => 'gra', 'Gorai.007G373600' => 'gra', 'Gorai.007G373700' => 'gra', 'Gorai.009G416300' => 'gra', 'Gorai.009G416400' => 'gra', 'Gorai.010G086000' => 'gra', 'Gorai.011G238400' => 'gra', 'GSVIVG01006148001' => 'vvi', 'GSVIVG01015123001' => 'vvi', 'GSVIVG01015124001' => 'vvi', 'GSVIVG01015138001' => 'vvi', 'GSVIVG01015140001' => 'vvi', 'GSVIVG01016257001' => 'vvi', 'GSVIVG01024292001' => 'vvi', 'GSVIVG01024293001' => 'vvi', 'GSVIVG01024294001' => 'vvi', 'GSVIVG01024295001' => 'vvi', 'GSVIVG01024299001' => 'vvi', 'GSVIVG01024303001' => 'vvi', 'GSVIVG01024305001' => 'vvi', 'GSVIVG01024306001' => 'vvi', 'GSVIVG01024315001' => 'vvi', 'GSVIVG01025214001' => 'vvi', 'GSVIVG01025703001' => 'vvi', 'HanXRQChr02g0052151' => 'han', 'HanXRQChr02g0052221' => 'han', 'HanXRQChr02g0053471' => 'han', 'HanXRQChr07g0195401' => 'han', 'HanXRQChr09g0246871' => 'han', 'HanXRQChr13g0400161' => 'han', 'HanXRQChr13g0400171' => 'han', 'HanXRQChr13g0400191' => 'han', 'HanXRQChr14g0454551' => 'han', 'Haze_16872' => 'cav', 'Haze_16875' => 'cav', 'Haze_16876' => 'cav', 'Haze_20579' => 'cav', 'Haze_25962' => 'cav', 'Hma1.2p1_0205F.1_g087330' => 'hma', 'Hma1.2p1_0307F.1_g119900' => 'hma', 'Hma1.2p1_0366F.1_g136840' => 'hma', 'Hma1.2p1_1356F.1_g277860' => 'hma', 'Hma1.2p1_1458F.1_g284720' => 'hma', 'HPP92_007441' => 'vpl', 'HPP92_007442' => 'vpl', 'HPP92_007443' => 'vpl', 'HPP92_007444' => 'vpl', 'HPP92_007445' => 'vpl', 'HPP92_008607' => 'vpl', 'HPP92_021022' => 'vpl', 'HPP92_021023' => 'vpl', 'Hund12083' => 'sun', 'Hund20258' => 'sun', 'Lalb_Chr01g0004411' => 'lal', 'Lalb_Chr01g0004421' => 'lal', 'Lalb_Chr01g0018751' => 'lal', 'Lalb_Chr02g0142261' => 'lal', 'Lalb_Chr02g0156081' => 'lal', 'Lalb_Chr06g0171571' => 'lal', 'Lalb_Chr06g0171591' => 'lal', 'Lalb_Chr17g0349331' => 'lal', 'Lalb_Chr21g0306151' => 'lal', 'Lalb_Chr25g0289081' => 'lal', 'Lj1g0001296' => 'lja', 'Lj1g0004105' => 'lja', 'Lj1g0004110' => 'lja', 'Lj1g0024768' => 'lja', 'Lj2A1021G43' => 'lonja', 'Lj2A114T40' => 'lonja', 'Lj2A11G48' => 'lonja', 'Lj2C16G3' => 'lonja', 'Lj3A983T60' => 'lonja', 'Lj3g0012710' => 'lja', 'Lj3g0027359' => 'lja', 'Lj5g0006407' => 'lja', 'Lj5g0017962' => 'lja', 'Lj5g0021838' => 'lja', 'Lj6g0027600' => 'lja', 'LjContig00081g0013598' => 'lja', 'Lsat_1_v5_gn_2_106520' => 'lsa', 'Lsat_1_v5_gn_2_106540' => 'lsa', 'Lsat_1_v5_gn_2_42720' => 'lsa', 'Lsat_1_v5_gn_6_31000' => 'lsa', 'Lsat_1_v5_gn_6_31080' => 'lsa', 'Lsat_1_v5_gn_9_68321' => 'lsa', 'Manes.04G018000' => 'mes', 'Manes.07G098700' => 'mes', 'Manes.08G008400' => 'mes', 'Manes.09G063700' => 'mes', 'Manes.10G047500' => 'mes', 'Manes.16G098200' => 'mes', 'Mapoly0005s0086' => 'mpo', 'Mapoly0005s0089' => 'mpo', 'Mapoly0009s0173' => 'mpo', 'Mapoly0014s0211' => 'mpo', 'Mapoly0044s0114' => 'mpo', 'Mapoly0070s0061' => 'mpo', 'Mapoly0070s0065' => 'mpo', 'Mapoly0070s0066' => 'mpo', 'Mapoly0070s0068' => 'mpo', 'Mapoly0070s0069' => 'mpo', 'Mapoly0070s0071' => 'mpo', 'Mapoly0132s0049' => 'mpo', 'Mapoly0142s0036' => 'mpo', 'MBI03_g42616_MAGBIO' => 'mbi', 'MBI10_g06947_MAGBIO' => 'mbi', 'MBI18_g13608_MAGBIO' => 'mbi', 'MBI18_g13609_MAGBIO' => 'mbi', 'MBI18_g22096_MAGBIO' => 'mbi', 'MBI18_g31326_MAGBIO' => 'mbi', 'MBI18_g31327_MAGBIO' => 'mbi', 'MBI18_g39298_MAGBIO' => 'mbi', 'MBI19_g19953_MAGBIO' => 'mbi', 'MD01G1106900' => 'mdo', 'MD03G1121400' => 'mdo', 'MD03G1121500' => 'mdo', 'MD04G1096200' => 'mdo', 'MD07G1172700' => 'mdo', 'MD12G1116700' => 'mdo', 'Medtr1g064090' => 'mtr', 'Medtr1g094780' => 'mtr', 'Medtr2g094960' => 'mtr', 'Medtr2g095010' => 'mtr', 'Medtr5g098720' => 'mtr', 'Medtr7g101395' => 'mtr', 'Medtr7g101425' => 'mtr', 'MELO3C014222.2' => 'cme', 'MELO3C014223.2' => 'cme', 'MELO3C014224.2' => 'cme', 'MELO3C014225.2' => 'cme', 'MELO3C014226.2' => 'cme', 'MELO3C014227.2' => 'cme', 'MELO3C014228.2' => 'cme', 'MELO3C014229.2' => 'cme', 'MELO3C015503.2' => 'cme', 'MELO3C017809.2' => 'cme', 'MELO3C017810.2' => 'cme', 'MELO3C017811.2' => 'cme', 'MELO3C019809.2' => 'cme', 'MELO3C025786.2' => 'cme', 'Migut.F01977' => 'egut', 'Migut.J00542' => 'egut', 'Migut.L01685' => 'egut', 'MSTRG.26703' => 'ama', 'MSTRG.5746' => 'ama', 'Nitab4.5_0000071g0170' => 'nta', 'Nitab4.5_0000101g0270' => 'nta', 'Nitab4.5_0000582g0180' => 'nta', 'Nitab4.5_0000754g0260' => 'nta', 'Nitab4.5_0002130g0010' => 'nta', 'Nitab4.5_0005320g0020' => 'nta', 'Nitab4.5_0008883g0010' => 'nta', 'Nitab4.5_0012382g0010' => 'nta', 'Nitab4.5_0018680g0010' => 'nta', 'Nn1g05489' => 'nnu', 'Nn1g05490' => 'nnu', 'Nn1g05587' => 'nnu', 'Nn2g10960' => 'nnu', 'Nn2g11515' => 'nnu', 'Nn2g13724' => 'nnu', 'Nn3g19423' => 'nnu', 'Nn3g19424' => 'nnu', 'Nn3g20361' => 'nnu', 'Nn3g20362' => 'nnu', 'Nn5g29113' => 'nnu', 'Nn5g29114' => 'nnu', 'Nn6g35574' => 'nnu', 'Nn6g35575' => 'nnu', 'Nn7g36418' => 'nnu', 'Nn7g36876' => 'nnu', 'Nn7g37758' => 'nnu', 'Nn8g38741' => 'nnu', 'Nn8g41259' => 'nnu', 'Oeu014383.1' => 'oeu', 'Oeu015307.1' => 'oeu', 'Oeu036623.1' => 'oeu', 'Oeu045213.2' => 'oeu', 'Oeu050307.1' => 'oeu', 'Oeu055571.1' => 'oeu', 'Oeu055584.1' => 'oeu', 'Os02g0626400' => 'osa', 'Os02g0626600' => 'osa', 'Os02g0627100' => 'osa', 'Os04g0518100' => 'osa', 'Os04g0518400' => 'osa', 'Os05g0427400' => 'osa', 'Os08g0308300' => 'osa', 'Os10g0483700' => 'osa', 'Os11g0708900' => 'osa', 'Os12g0461050' => 'osa', 'Os12g0461300' => 'osa', 'Os12g0520200' => 'osa', 'Peaxi162Scf00123g00096' => 'pax', 'Peaxi162Scf00488g00074' => 'pax', 'Peaxi162Scf00858g00215' => 'pax', 'PGR044G1850' => 'pgr', 'PGR142G4008' => 'pgr', 'PGSC0003DMG400005492' => 'stu', 'PGSC0003DMG400019386' => 'stu', 'PGSC0003DMG400023458' => 'stu', 'PGSC0003DMG400031365' => 'stu', 'PGSC0003DMG400031457' => 'stu', 'PGSC0003DMG401021549' => 'stu', 'PGSC0003DMG401021564' => 'stu', 'PGSC0003DMG402021549' => 'stu', 'PGSC0003DMG402021564' => 'stu', 'Phvul.001G177700' => 'pvu', 'Phvul.001G177800' => 'pvu', 'Phvul.007G096100' => 'pvu', 'Phvul.007G096300' => 'pvu', 'Phvul.007G150500' => 'pvu', 'Phvul.008G289500' => 'pvu', 'Potri.006G126800' => 'ptr', 'Potri.008G038200' => 'ptr', 'Potri.010G224100' => 'ptr', 'Potri.010G224200' => 'ptr', 'Potri.016G091100' => 'ptr', 'Pp3c10_21810' => 'ppa', 'Pp3c11_3080' => 'ppa', 'Pp3c13_12190' => 'ppa', 'Pp3c13_9000' => 'ppa', 'Pp3c14_11870' => 'ppa', 'Pp3c17_7320' => 'ppa', 'Pp3c18_5430' => 'ppa', 'Pp3c19_13690' => 'ppa', 'Pp3c1_18680' => 'ppa', 'Pp3c1_18830' => 'ppa', 'Pp3c1_18940' => 'ppa', 'Pp3c20_4540' => 'ppa', 'Pp3c21_7640' => 'ppa', 'Pp3c21_7670' => 'ppa', 'Pp3c21_7680' => 'ppa', 'Pp3c22_17310' => 'ppa', 'Pp3c22_17320' => 'ppa', 'Pp3c22_17540' => 'ppa', 'Pp3c23_17690' => 'ppa', 'Pp3c23_4450' => 'ppa', 'Pp3c24_13110' => 'ppa', 'Pp3c25_2620' => 'ppa', 'Pp3c26_14610' => 'ppa', 'Pp3c26_2420' => 'ppa', 'Pp3c2_30610' => 'ppa', 'Pp3c2_32330' => 'ppa', 'Pp3c2_32410' => 'ppa', 'Pp3c3_1810' => 'ppa', 'Pp3c7_21960' => 'ppa', 'Pp3c7_24510' => 'ppa', 'Prupe.2G211800' => 'ppe', 'Prupe.6G104500' => 'ppe', 'Prupe.6G235400' => 'ppe', 'Psat0s4534g0080' => 'psa', 'Psat0s4806g0040' => 'psa', 'Psat0s4806g0080' => 'psa', 'Psat1g046920' => 'psa', 'Psat2g001960' => 'psa', 'Psat3g023040' => 'psa', 'Psat3g023120' => 'psa', 'Psat3g040960' => 'psa', 'Psat3g041040' => 'psa', 'Psat3g041080' => 'psa', 'Psat3g072160' => 'psa', 'Psat6g072360' => 'psa', 'Psat6g182520' => 'psa', 'PSO063G0499' => 'pso', 'PSO063G0868' => 'pso', 'PSO063G6937' => 'pso', 'PSO339G2188' => 'pso', 'PSO339G2284' => 'pso', 'PSO421G0737' => 'pso', 'PSO801G0780' => 'pso', 'QL02p061264' => 'qlo', 'QL02p061377' => 'qlo', 'QL07p044148' => 'qlo', 'QL07p044165' => 'qlo', 'QL08p055354' => 'qlo', 'QL93p2013_0042' => 'qlo', 'QL93p2013_0048' => 'qlo', 'RcHm_v2.0_Chr1g0363011' => 'rch', 'RcHm_v2.0_Chr3g0469861' => 'rch', 'RcHm_v2.0_Chr7g0212181' => 'rch', 'Rhsim03G0118900' => 'rsi', 'Rhsim03G0119000' => 'rsi', 'Rhsim03G0119100' => 'rsi', 'Rhsim04G0145800' => 'rsi', 'Rhsim13G0096300' => 'rsi', 'Sabra06G0099900' => 'sbr', 'Sabra08G0025700' => 'sbr', 'Sabra08G0025800' => 'sbr', 'Sabra08G0025900' => 'sbr', 'Sabra10G0173400' => 'sbr', 'Sabra16G0096400' => 'sbr', 'SalBow2G0227' => 'sbo', 'SalBow3G0858' => 'sbo', 'SalBow3G1710' => 'sbo', 'SalBow3G3417' => 'sbo', 'SalBow3G3731' => 'sbo', 'SalBow4G0717' => 'sbo', 'SalBow5G1955' => 'sbo', 'SalBow5G2236' => 'sbo', 'SalBow6G6448' => 'sbo', 'SalBow7G4181' => 'sbo', 'SalBow8G2765' => 'sbo', 'SalBow8G4126' => 'sbo', 'Sc02g0001760' => 'sci', 'Sc09g0006180' => 'sci', 'Sed0003527' => 'sed', 'Sed0007864' => 'sed', 'Sed0008292' => 'sed', 'Sed0012846' => 'sed', 'Sed0013151' => 'sed', 'Sed0015918' => 'sed', 'Sed0018325' => 'sed', 'Sed0018797' => 'sed', 'Sed0023091' => 'sed', 'Sed0025747' => 'sed', 'Sed0026131' => 'sed', 'Sed0026761' => 'sed', 'Sed0026887' => 'sed', 'Sed0027608' => 'sed', 'SEGI_00732' => 'sgi', 'SEGI_06616' => 'sgi', 'SEGI_12036' => 'sgi', 'SEGI_12427' => 'sgi', 'SEGI_18771' => 'sgi', 'SEGI_22248' => 'sgi', 'SEGI_33141' => 'sgi', 'SEGI_38051' => 'sgi', 'SGA_v2.0_scaffold126G33933' => 'sas', 'SGA_v2.0_scaffold35G14141' => 'sas', 'SGA_v2.0_scaffold452G51823' => 'sas', 'SHI12490' => 'shi', 'SMO268G0021' => 'smo', 'Solyc00g500095.1' => 'sly', 'Solyc00g500353.1' => 'sly', 'Solyc03g042560.3' => 'sly', 'Solyc03g071870.1' => 'sly', 'Solyc03g078270.2' => 'sly', 'Solyc03g078280.3' => 'sly', 'Solyc05g056170.3' => 'sly', 'Solyc09g007890.1' => 'sly', 'Solyc09g007900.4' => 'sly', 'Solyc09g007910.4' => 'sly', 'Solyc09g007920.4' => 'sly', 'Solyc10g011920.3' => 'sly', 'Solyc10g011925.1' => 'sly', 'Solyc10g011930.1' => 'sly', 'Solyc10g086180.2' => 'sly', 'Sopen03g007350' => 'spe', 'Sopen03g007390' => 'spe', 'Sopen03g021000' => 'spe', 'Sopen03g021010' => 'spe', 'Sopen05g034580' => 'spe', 'Sopen09g002720' => 'spe', 'Sopen09g002730' => 'spe', 'Sopen09g002740' => 'spe', 'Sopen09g002750' => 'spe', 'Sopen10g005710' => 'spe', 'Sopen10g035560' => 'spe', 'Sp3g08610' => 'spa', 'Sp4g19350' => 'spa', 'Sp5g09080' => 'spa', 'TAR369G0708' => 'tar', 'TAR624G1211' => 'tar', 'TAR633G2197' => 'tar', 'TAR636G3614' => 'tar', 'THA.LOC104805263' => 'tha', 'THA.LOC104806492' => 'tha', 'THA.LOC104816418' => 'tha', 'THA.LOC104823458' => 'tha', 'Thecc.05G062400' => 'tca', 'Thecc.09G343800' => 'tca', 'Thecc.10G076600' => 'tca', 'Thhalv10006288m.g' => 'esa', 'Thhalv10010153m.g' => 'esa', 'Thhalv10016314m.g' => 'esa', 'Thhalv10020168m.g' => 'esa', 'TPR.G11497' => 'tpr', 'TPR.G11622' => 'tpr', 'TPR.G16033' => 'tpr', 'TPR.G16051' => 'tpr', 'TPR.G16058' => 'tpr', 'TPR.G16065' => 'tpr', 'TPR.G1967' => 'tpr', 'TPR.G35217' => 'tpr', 'TPR.G35895' => 'tpr', 'TPR.G36469' => 'tpr', 'TPR.G9372' => 'tpr', 'TWI38G1740' => 'twi', 'TWI38G1917' => 'twi', 'TWI53G2138' => 'twi', 'TWI63G1305' => 'twi', 'TWI74G1356' => 'twi', 'TWI77G0988' => 'twi', 'unitig_26.g9224' => 'ugi', 'unitig_749.g14273' => 'ugi', 'unitig_749.g14274' => 'ugi', 'unitig_8.g4336' => 'ugi', 'unitig_8.g4337' => 'ugi', 'unitig_8.g4338' => 'ugi', 'vmacro03214' => 'vma', 'vmacro07061' => 'vma', 'vmacro08770' => 'vma', 'vmacro08771' => 'vma', 'vmacro08772' => 'vma', 'VMungo0647G0568' => 'vmu', 'VMungo0720G0549' => 'vmu', 'VMungo0720G2073' => 'vmu', 'VMungo0720G2437' => 'vmu', 'VMungo1383G0800' => 'vmu', 'VMungo1383G2201' => 'vmu', 'Zm00001eb000140' => 'zma', 'Zm00001eb050970' => 'zma', 'Zm00001eb077220' => 'zma', 'Zm00001eb077230' => 'zma', 'Zm00001eb135760' => 'zma', 'Zm00001eb144920' => 'zma', 'Zm00001eb185240' => 'zma', 'Zm00001eb185250' => 'zma', 'Zm00001eb185260' => 'zma', 'Zm00001eb205530' => 'zma', 'Zm00001eb228950' => 'zma', 'Zm00001eb247630' => 'zma', 'Zm00001eb247650' => 'zma', 'Zm00001eb247660' => 'zma', 'Zm00001eb336630' => 'zma', 'Zm00001eb363980' => 'zma', 'Zm00001eb363990' => 'zma', 'Zm00001eb364000' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D000844' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000844' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D000844' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D000844' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000844', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '707', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A04p06200' => 'bna', 'A04p15880' => 'bna', 'A04p28310' => 'bna', 'A05p08780' => 'bna', 'A05p38810' => 'bna', 'A07p21490' => 'bna', 'A09p46290' => 'bna', 'Aa31LG3G2910' => 'aar', 'Aa31LG5G22310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4622' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5205' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.725' => 'aag', 'Actinidia06760' => 'ach', 'Actinidia07153' => 'ach', 'Actinidia13078' => 'ach', 'Actinidia22446' => 'ach', 'Actinidia24116' => 'ach', 'Actinidia31339' => 'ach', 'Actinidia31340' => 'ach', 'Actinidia32439' => 'ach', 'Actinidia32440' => 'ach', 'Actinidia32441' => 'ach', 'Ah.15g092440' => 'amhyb', 'AL3G21670' => 'aly', 'AL4G33370' => 'aly', 'AL5G34170' => 'aly', 'AL6G13850' => 'aly', 'Aqoxy1G01205' => 'aox', 'Aqoxy2G01818' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0B4MFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5H4H17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9CK4GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EEZ4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI9C9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Z3VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB2RRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PUMP6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2YH27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULT2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1SQAY' => 'arhy', 'AT2G37040' => 'ath', 'AT3G10340' => 'ath', 'AT3G53260' => 'ath', 'AT5G04230' => 'ath', 'ATR0048G051' => 'atr', 'ATR0598G039' => 'atr', 'ATR0598G058' => 'atr', 'ATR0598G114' => 'atr', 'ATR0763G117' => 'atr', 'Atru.chr12.710' => 'acertr', 'Atru.chr3.3599' => 'acertr', 'Atru.chr7.1656' => 'acertr', 'Atru.chr8.1402' => 'acertr', 'AUR62039879' => 'cqu', 'AUR62040467' => 'cqu', 'BcaB01g00295' => 'bca', 'BcaB01g03796' => 'bca', 'BcaB01g03798' => 'bca', 'BcaB02g07797' => 'bca', 'BcaB02g08531' => 'bca', 'BcaB02g09307' => 'bca', 'BcaB05g21767' => 'bca', 'BcaB05g21768' => 'bca', 'BcaB06g28973' => 'bca', 'BcaC02g07551' => 'bca', 'BcaC02g07552' => 'bca', 'BcaC02g07553' => 'bca', 'BcaC02g07556' => 'bca', 'BcaC02g09174' => 'bca', 'BcaC02g09175' => 'bca', 'BcaC02g11831' => 'bca', 'BcaC02g12836' => 'bca', 'BcaC03g12950' => 'bca', 'BcaC05g29476' => 'bca', 'BcaC07g39687' => 'bca', 'BcaC07g39688' => 'bca', 'BcaC07g39689' => 'bca', 'BcaNung04594' => 'bca', 'BcaNung06565' => 'bca', 'BolC2t06142H' => 'bol', 'BolC4t22683H' => 'bol', 'BolC4t25500H' => 'bol', 'BolC4t25539H' => 'bol', 'BolC4t26629H' => 'bol', 'BolC4t28059H' => 'bol', 'BolC5t34439H' => 'bol', 'BolC6t37294H' => 'bol', 'BolC8t50456H' => 'bol', 'BraA02t04805Z' => 'bra', 'BraA04t16324Z' => 'bra', 'BraA04t17217Z' => 'bra', 'BraA04t17220Z' => 'bra', 'BraA04t17221Z' => 'bra', 'BraA04t18313Z' => 'bra', 'BraA05t19846Z' => 'bra', 'BraA05t22672Z' => 'bra', 'BraA07t29836Z' => 'bra', 'BraA09t40092Z' => 'bra', 'C02p01850' => 'bna', 'C04p10910' => 'bna', 'C04p39320' => 'bna', 'C04p39330' => 'bna', 'C04p39690' => 'bna', 'C04p39700' => 'bna', 'C04p50310' => 'bna', 'C04p65660' => 'bna', 'C05p57840' => 'bna', 'C06p21090' => 'bna', 'C08p28490' => 'bna', 'CAN.G3578.1' => 'can', 'CAN.G363.12' => 'can', 'CAN.G363.13' => 'can', 'CAN.G363.14' => 'can', 'CAN.G363.7' => 'can', 'CAN.G363.8' => 'can', 'CAN.G509.12' => 'can', 'CAN.G694.92' => 'can', 'CAN.G806.3' => 'can', 'CANSAT56G4207' => 'cansat', 'CANSAT80G0523' => 'cansat', 'CANSAT80G0733' => 'cansat', 'CANSAT80G0924' => 'cansat', 'CANSAT80G1719' => 'cansat', 'CANSAT80G1948' => 'cansat', 'CANSAT80G2016' => 'cansat', 'CARHR084820' => 'chi', 'CARHR131540' => 'chi', 'CARHR289320' => 'chi', 'Carub.0003s0952' => 'cru', 'Carub.0004s1892' => 'cru', 'Carub.0005s1980' => 'cru', 'Ca_06487_v3' => 'car', 'Ca_08848_v3' => 'car', 'Ca_10557_v3' => 'car', 'Ca_11483_v3' => 'car', 'Ca_29940_v3' => 'car', 'CBR_g34530' => 'cbr', 'CBR_g57646' => 'cbr', 'Cc00_g20750' => 'ccan', 'Cc01_g10880' => 'ccan', 'Cc02_g11230' => 'ccan', 'Cc06_g03980' => 'ccan', 'CDE03G0013' => 'cde', 'CDE03G0030' => 'cde', 'CDE03G0232' => 'cde', 'CDE04G0744' => 'cde', 'CDE04G2639' => 'cde', 'CDE04G3431' => 'cde', 'CDE04G3557' => 'cde', 'CDE05G0703' => 'cde', 'CDE05G2606' => 'cde', 'CDE06G0268' => 'cde', 'CDE06G0737' => 'cde', 'CDE06G2597' => 'cde', 'CDE07G0082' => 'cde', 'CDE07G0918' => 'cde', 'CDE07G1529' => 'cde', 'CDE07G1531' => 'cde', 'Cfa001659' => 'cfa', 'Cfa001660' => 'cfa', 'Cfa003036' => 'cfa', 'Cfa003037' => 'cfa', 'Cfa003039' => 'cfa', 'Cfa017574' => 'cfa', 'Ciclev10010874m.g' => 'ccl', 'Ciclev10011134m.g' => 'ccl', 'Ciclev10011175m.g' => 'ccl', 'Ciclev10027912m.g' => 'ccl', 'Ciclev10027913m.g' => 'ccl', 'Ciclev10029946m.g' => 'ccl', 'Ciclev10030821m.g' => 'ccl', 'CiPaw.01G271300' => 'cil', 'CiPaw.02G173200' => 'cil', 'CiPaw.04G145900' => 'cil', 'CiPaw.04G146000' => 'cil', 'CiPaw.04G146100' => 'cil', 'CiPaw.09G174400' => 'cil', 'COL.COLO4_18142' => 'col', 'COL.COLO4_21739' => 'col', 'COL.COLO4_26994' => 'col', 'COL.COLO4_36662' => 'col', 'Cpa.g.c40737' => 'cpa', 'Cpa.g.sc2443.2' => 'cpa', 'Cpa.g.sc311.1' => 'cpa', 'Cpa.g.sc390.3' => 'cpa', 'Cpa.g.sc92.120' => 'cpa', 'CsaV3_1G040750' => 'csa', 'CsaV3_4G002290' => 'csa', 'CsaV3_4G002300' => 'csa', 'CsaV3_4G002310' => 'csa', 'CsaV3_4G002320' => 'csa', 'CsaV3_4G002330' => 'csa', 'CsaV3_6G014060' => 'csa', 'CsaV3_6G036550' => 'csa', 'CsaV3_6G039660' => 'csa', 'CsaV3_6G039670' => 'csa', 'CsaV3_6G039680' => 'csa', 'CsaV3_6G039690' => 'csa', 'CsaV3_6G039700' => 'csa', 'CsaV3_6G039710' => 'csa', 'CsaV3_6G039720' => 'csa', 'CSS0001442' => 'camsi', 'CSS0010367' => 'camsi', 'CSS0018870' => 'camsi', 'CSS0021474' => 'camsi', 'CSS0034802' => 'camsi', 'CSS0041448' => 'camsi', 'CSS0048281' => 'camsi', 'DCAR_014989' => 'dca', 'DCAR_017697' => 'dca', 'DCAR_020833' => 'dca', 'Dinv25385' => 'din', 'Dinv31309' => 'din', 'Dinv31310' => 'din', 'Dinv32720' => 'din', 'Dinv35765' => 'din', 'Dinv36424' => 'din', 'Dinv37296' => 'din', 'Dinv42363' => 'din', 'Duzib093G1956' => 'dzi', 'Duzib106G1669' => 'dzi', 'Duzib106G1705' => 'dzi', 'Duzib114G1045' => 'dzi', 'Duzib128G0518' => 'dzi', 'Duzib128G1271' => 'dzi', 'Duzib168G1200' => 'dzi', 'Duzib168G1693' => 'dzi', 'ECA232G3724' => 'eca', 'ECA233G3222' => 'eca', 'ECA233G6263' => 'eca', 'ECA236G2838' => 'eca', 'ECA238G0266' => 'eca', 'ECA238G0276' => 'eca', 'ECA238G0836' => 'eca', 'ECA238G3831' => 'eca', 'EL10Ac7g16597' => 'bvu', 'Eucgr.A01144' => 'egr', 'Eucgr.C03570' => 'egr', 'Eucgr.G02848' => 'egr', 'Eucgr.G02849' => 'egr', 'Eucgr.G02850' => 'egr', 'Eucgr.G02851' => 'egr', 'Eucgr.G02852' => 'egr', 'Eucgr.J00907' => 'egr', 'Eucgr.J01079' => 'egr', 'FAN01G2698' => 'fan', 'FAN02G0949' => 'fan', 'FAN03G3379' => 'fan', 'FAN06G1111' => 'fan', 'FAN06G2093' => 'fan', 'FAN09G1337' => 'fan', 'FAN10G2818' => 'fan', 'FAN10G2959' => 'fan', 'FAN14G2582' => 'fan', 'FvH4_6g16060' => 'fve', 'FvH4_7g19130' => 'fve', 'Glyma.02G309300' => 'gma', 'Glyma.03G181600' => 'gma', 'Glyma.03G181700' => 'gma', 'Glyma.10G058200' => 'gma', 'Glyma.10G209800' => 'gma', 'Glyma.13G145000' => 'gma', 'Glyma.19G182300' => 'gma', 'Glyma.20G180800' => 'gma', 'Gohir.A01G214800' => 'ghi', 'Gohir.A04G073300' => 'ghi', 'Gohir.A04G073400' => 'ghi', 'Gohir.A06G074800' => 'ghi', 'Gohir.A09G148900' => 'ghi', 'Gohir.A10G204700' => 'ghi', 'Gohir.A11G324340' => 'ghi', 'Gohir.D01G203300' => 'ghi', 'Gohir.D04G112140' => 'ghi', 'Gohir.D04G112180' => 'ghi', 'Gohir.D06G073600' => 'ghi', 'Gohir.D09G144700' => 'ghi', 'Gohir.D10G212700' => 'ghi', 'Gohir.D11G343500' => 'ghi', 'Gorai.002G248000' => 'gra', 'Gorai.006G166000' => 'gra', 'Gorai.007G373600' => 'gra', 'Gorai.007G373700' => 'gra', 'Gorai.009G416300' => 'gra', 'Gorai.009G416400' => 'gra', 'Gorai.010G086000' => 'gra', 'Gorai.011G238400' => 'gra', 'GSVIVG01006148001' => 'vvi', 'GSVIVG01015123001' => 'vvi', 'GSVIVG01015124001' => 'vvi', 'GSVIVG01015138001' => 'vvi', 'GSVIVG01015140001' => 'vvi', 'GSVIVG01016257001' => 'vvi', 'GSVIVG01024292001' => 'vvi', 'GSVIVG01024293001' => 'vvi', 'GSVIVG01024294001' => 'vvi', 'GSVIVG01024295001' => 'vvi', 'GSVIVG01024299001' => 'vvi', 'GSVIVG01024303001' => 'vvi', 'GSVIVG01024305001' => 'vvi', 'GSVIVG01024306001' => 'vvi', 'GSVIVG01024315001' => 'vvi', 'GSVIVG01025214001' => 'vvi', 'GSVIVG01025703001' => 'vvi', 'HanXRQChr02g0052151' => 'han', 'HanXRQChr02g0052221' => 'han', 'HanXRQChr02g0053471' => 'han', 'HanXRQChr07g0195401' => 'han', 'HanXRQChr09g0246871' => 'han', 'HanXRQChr13g0400161' => 'han', 'HanXRQChr13g0400171' => 'han', 'HanXRQChr13g0400191' => 'han', 'HanXRQChr14g0454551' => 'han', 'Haze_16872' => 'cav', 'Haze_16875' => 'cav', 'Haze_16876' => 'cav', 'Haze_20579' => 'cav', 'Haze_25962' => 'cav', 'Hma1.2p1_0205F.1_g087330' => 'hma', 'Hma1.2p1_0307F.1_g119900' => 'hma', 'Hma1.2p1_0366F.1_g136840' => 'hma', 'Hma1.2p1_1356F.1_g277860' => 'hma', 'Hma1.2p1_1458F.1_g284720' => 'hma', 'HPP92_007441' => 'vpl', 'HPP92_007442' => 'vpl', 'HPP92_007443' => 'vpl', 'HPP92_007444' => 'vpl', 'HPP92_007445' => 'vpl', 'HPP92_008607' => 'vpl', 'HPP92_021022' => 'vpl', 'HPP92_021023' => 'vpl', 'Hund12083' => 'sun', 'Hund20258' => 'sun', 'Lalb_Chr01g0004411' => 'lal', 'Lalb_Chr01g0004421' => 'lal', 'Lalb_Chr01g0018751' => 'lal', 'Lalb_Chr02g0142261' => 'lal', 'Lalb_Chr02g0156081' => 'lal', 'Lalb_Chr06g0171571' => 'lal', 'Lalb_Chr06g0171591' => 'lal', 'Lalb_Chr17g0349331' => 'lal', 'Lalb_Chr21g0306151' => 'lal', 'Lalb_Chr25g0289081' => 'lal', 'Lj1g0001296' => 'lja', 'Lj1g0004105' => 'lja', 'Lj1g0004110' => 'lja', 'Lj1g0024768' => 'lja', 'Lj2A1021G43' => 'lonja', 'Lj2A114T40' => 'lonja', 'Lj2A11G48' => 'lonja', 'Lj2C16G3' => 'lonja', 'Lj3A983T60' => 'lonja', 'Lj3g0012710' => 'lja', 'Lj3g0027359' => 'lja', 'Lj5g0006407' => 'lja', 'Lj5g0017962' => 'lja', 'Lj5g0021838' => 'lja', 'Lj6g0027600' => 'lja', 'LjContig00081g0013598' => 'lja', 'Lsat_1_v5_gn_2_106520' => 'lsa', 'Lsat_1_v5_gn_2_106540' => 'lsa', 'Lsat_1_v5_gn_2_42720' => 'lsa', 'Lsat_1_v5_gn_6_31000' => 'lsa', 'Lsat_1_v5_gn_6_31080' => 'lsa', 'Lsat_1_v5_gn_9_68321' => 'lsa', 'Manes.04G018000' => 'mes', 'Manes.07G098700' => 'mes', 'Manes.08G008400' => 'mes', 'Manes.09G063700' => 'mes', 'Manes.10G047500' => 'mes', 'Manes.16G098200' => 'mes', 'Mapoly0005s0086' => 'mpo', 'Mapoly0005s0089' => 'mpo', 'Mapoly0009s0173' => 'mpo', 'Mapoly0014s0211' => 'mpo', 'Mapoly0044s0114' => 'mpo', 'Mapoly0070s0061' => 'mpo', 'Mapoly0070s0065' => 'mpo', 'Mapoly0070s0066' => 'mpo', 'Mapoly0070s0068' => 'mpo', 'Mapoly0070s0069' => 'mpo', 'Mapoly0070s0071' => 'mpo', 'Mapoly0132s0049' => 'mpo', 'Mapoly0142s0036' => 'mpo', 'MBI03_g42616_MAGBIO' => 'mbi', 'MBI10_g06947_MAGBIO' => 'mbi', 'MBI18_g13608_MAGBIO' => 'mbi', 'MBI18_g13609_MAGBIO' => 'mbi', 'MBI18_g22096_MAGBIO' => 'mbi', 'MBI18_g31326_MAGBIO' => 'mbi', 'MBI18_g31327_MAGBIO' => 'mbi', 'MBI18_g39298_MAGBIO' => 'mbi', 'MBI19_g19953_MAGBIO' => 'mbi', 'MD01G1106900' => 'mdo', 'MD03G1121400' => 'mdo', 'MD03G1121500' => 'mdo', 'MD04G1096200' => 'mdo', 'MD07G1172700' => 'mdo', 'MD12G1116700' => 'mdo', 'Medtr1g064090' => 'mtr', 'Medtr1g094780' => 'mtr', 'Medtr2g094960' => 'mtr', 'Medtr2g095010' => 'mtr', 'Medtr5g098720' => 'mtr', 'Medtr7g101395' => 'mtr', 'Medtr7g101425' => 'mtr', 'MELO3C014222.2' => 'cme', 'MELO3C014223.2' => 'cme', 'MELO3C014224.2' => 'cme', 'MELO3C014225.2' => 'cme', 'MELO3C014226.2' => 'cme', 'MELO3C014227.2' => 'cme', 'MELO3C014228.2' => 'cme', 'MELO3C014229.2' => 'cme', 'MELO3C015503.2' => 'cme', 'MELO3C017809.2' => 'cme', 'MELO3C017810.2' => 'cme', 'MELO3C017811.2' => 'cme', 'MELO3C019809.2' => 'cme', 'MELO3C025786.2' => 'cme', 'Migut.F01977' => 'egut', 'Migut.J00542' => 'egut', 'Migut.L01685' => 'egut', 'MSTRG.26703' => 'ama', 'MSTRG.5746' => 'ama', 'Nitab4.5_0000071g0170' => 'nta', 'Nitab4.5_0000101g0270' => 'nta', 'Nitab4.5_0000582g0180' => 'nta', 'Nitab4.5_0000754g0260' => 'nta', 'Nitab4.5_0002130g0010' => 'nta', 'Nitab4.5_0005320g0020' => 'nta', 'Nitab4.5_0008883g0010' => 'nta', 'Nitab4.5_0012382g0010' => 'nta', 'Nitab4.5_0018680g0010' => 'nta', 'Nn1g05489' => 'nnu', 'Nn1g05490' => 'nnu', 'Nn1g05587' => 'nnu', 'Nn2g10960' => 'nnu', 'Nn2g11515' => 'nnu', 'Nn2g13724' => 'nnu', 'Nn3g19423' => 'nnu', 'Nn3g19424' => 'nnu', 'Nn3g20361' => 'nnu', 'Nn3g20362' => 'nnu', 'Nn5g29113' => 'nnu', 'Nn5g29114' => 'nnu', 'Nn6g35574' => 'nnu', 'Nn6g35575' => 'nnu', 'Nn7g36418' => 'nnu', 'Nn7g36876' => 'nnu', 'Nn7g37758' => 'nnu', 'Nn8g38741' => 'nnu', 'Nn8g41259' => 'nnu', 'Oeu014383.1' => 'oeu', 'Oeu015307.1' => 'oeu', 'Oeu036623.1' => 'oeu', 'Oeu045213.2' => 'oeu', 'Oeu050307.1' => 'oeu', 'Oeu055571.1' => 'oeu', 'Oeu055584.1' => 'oeu', 'Os02g0626400' => 'osa', 'Os02g0626600' => 'osa', 'Os02g0627100' => 'osa', 'Os04g0518100' => 'osa', 'Os04g0518400' => 'osa', 'Os05g0427400' => 'osa', 'Os08g0308300' => 'osa', 'Os10g0483700' => 'osa', 'Os11g0708900' => 'osa', 'Os12g0461050' => 'osa', 'Os12g0461300' => 'osa', 'Os12g0520200' => 'osa', 'Peaxi162Scf00123g00096' => 'pax', 'Peaxi162Scf00488g00074' => 'pax', 'Peaxi162Scf00858g00215' => 'pax', 'PGR044G1850' => 'pgr', 'PGR142G4008' => 'pgr', 'PGSC0003DMG400005492' => 'stu', 'PGSC0003DMG400019386' => 'stu', 'PGSC0003DMG400023458' => 'stu', 'PGSC0003DMG400031365' => 'stu', 'PGSC0003DMG400031457' => 'stu', 'PGSC0003DMG401021549' => 'stu', 'PGSC0003DMG401021564' => 'stu', 'PGSC0003DMG402021549' => 'stu', 'PGSC0003DMG402021564' => 'stu', 'Phvul.001G177700' => 'pvu', 'Phvul.001G177800' => 'pvu', 'Phvul.007G096100' => 'pvu', 'Phvul.007G096300' => 'pvu', 'Phvul.007G150500' => 'pvu', 'Phvul.008G289500' => 'pvu', 'Potri.006G126800' => 'ptr', 'Potri.008G038200' => 'ptr', 'Potri.010G224100' => 'ptr', 'Potri.010G224200' => 'ptr', 'Potri.016G091100' => 'ptr', 'Pp3c10_21810' => 'ppa', 'Pp3c11_3080' => 'ppa', 'Pp3c13_12190' => 'ppa', 'Pp3c13_9000' => 'ppa', 'Pp3c14_11870' => 'ppa', 'Pp3c17_7320' => 'ppa', 'Pp3c18_5430' => 'ppa', 'Pp3c19_13690' => 'ppa', 'Pp3c1_18680' => 'ppa', 'Pp3c1_18830' => 'ppa', 'Pp3c1_18940' => 'ppa', 'Pp3c20_4540' => 'ppa', 'Pp3c21_7640' => 'ppa', 'Pp3c21_7670' => 'ppa', 'Pp3c21_7680' => 'ppa', 'Pp3c22_17310' => 'ppa', 'Pp3c22_17320' => 'ppa', 'Pp3c22_17540' => 'ppa', 'Pp3c23_17690' => 'ppa', 'Pp3c23_4450' => 'ppa', 'Pp3c24_13110' => 'ppa', 'Pp3c25_2620' => 'ppa', 'Pp3c26_14610' => 'ppa', 'Pp3c26_2420' => 'ppa', 'Pp3c2_30610' => 'ppa', 'Pp3c2_32330' => 'ppa', 'Pp3c2_32410' => 'ppa', 'Pp3c3_1810' => 'ppa', 'Pp3c7_21960' => 'ppa', 'Pp3c7_24510' => 'ppa', 'Prupe.2G211800' => 'ppe', 'Prupe.6G104500' => 'ppe', 'Prupe.6G235400' => 'ppe', 'Psat0s4534g0080' => 'psa', 'Psat0s4806g0040' => 'psa', 'Psat0s4806g0080' => 'psa', 'Psat1g046920' => 'psa', 'Psat2g001960' => 'psa', 'Psat3g023040' => 'psa', 'Psat3g023120' => 'psa', 'Psat3g040960' => 'psa', 'Psat3g041040' => 'psa', 'Psat3g041080' => 'psa', 'Psat3g072160' => 'psa', 'Psat6g072360' => 'psa', 'Psat6g182520' => 'psa', 'PSO063G0499' => 'pso', 'PSO063G0868' => 'pso', 'PSO063G6937' => 'pso', 'PSO339G2188' => 'pso', 'PSO339G2284' => 'pso', 'PSO421G0737' => 'pso', 'PSO801G0780' => 'pso', 'QL02p061264' => 'qlo', 'QL02p061377' => 'qlo', 'QL07p044148' => 'qlo', 'QL07p044165' => 'qlo', 'QL08p055354' => 'qlo', 'QL93p2013_0042' => 'qlo', 'QL93p2013_0048' => 'qlo', 'RcHm_v2.0_Chr1g0363011' => 'rch', 'RcHm_v2.0_Chr3g0469861' => 'rch', 'RcHm_v2.0_Chr7g0212181' => 'rch', 'Rhsim03G0118900' => 'rsi', 'Rhsim03G0119000' => 'rsi', 'Rhsim03G0119100' => 'rsi', 'Rhsim04G0145800' => 'rsi', 'Rhsim13G0096300' => 'rsi', 'Sabra06G0099900' => 'sbr', 'Sabra08G0025700' => 'sbr', 'Sabra08G0025800' => 'sbr', 'Sabra08G0025900' => 'sbr', 'Sabra10G0173400' => 'sbr', 'Sabra16G0096400' => 'sbr', 'SalBow2G0227' => 'sbo', 'SalBow3G0858' => 'sbo', 'SalBow3G1710' => 'sbo', 'SalBow3G3417' => 'sbo', 'SalBow3G3731' => 'sbo', 'SalBow4G0717' => 'sbo', 'SalBow5G1955' => 'sbo', 'SalBow5G2236' => 'sbo', 'SalBow6G6448' => 'sbo', 'SalBow7G4181' => 'sbo', 'SalBow8G2765' => 'sbo', 'SalBow8G4126' => 'sbo', 'Sc02g0001760' => 'sci', 'Sc09g0006180' => 'sci', 'Sed0003527' => 'sed', 'Sed0007864' => 'sed', 'Sed0008292' => 'sed', 'Sed0012846' => 'sed', 'Sed0013151' => 'sed', 'Sed0015918' => 'sed', 'Sed0018325' => 'sed', 'Sed0018797' => 'sed', 'Sed0023091' => 'sed', 'Sed0025747' => 'sed', 'Sed0026131' => 'sed', 'Sed0026761' => 'sed', 'Sed0026887' => 'sed', 'Sed0027608' => 'sed', 'SEGI_00732' => 'sgi', 'SEGI_06616' => 'sgi', 'SEGI_12036' => 'sgi', 'SEGI_12427' => 'sgi', 'SEGI_18771' => 'sgi', 'SEGI_22248' => 'sgi', 'SEGI_33141' => 'sgi', 'SEGI_38051' => 'sgi', 'SGA_v2.0_scaffold126G33933' => 'sas', 'SGA_v2.0_scaffold35G14141' => 'sas', 'SGA_v2.0_scaffold452G51823' => 'sas', 'SHI12490' => 'shi', 'SMO268G0021' => 'smo', 'Solyc00g500095.1' => 'sly', 'Solyc00g500353.1' => 'sly', 'Solyc03g042560.3' => 'sly', 'Solyc03g071870.1' => 'sly', 'Solyc03g078270.2' => 'sly', 'Solyc03g078280.3' => 'sly', 'Solyc05g056170.3' => 'sly', 'Solyc09g007890.1' => 'sly', 'Solyc09g007900.4' => 'sly', 'Solyc09g007910.4' => 'sly', 'Solyc09g007920.4' => 'sly', 'Solyc10g011920.3' => 'sly', 'Solyc10g011925.1' => 'sly', 'Solyc10g011930.1' => 'sly', 'Solyc10g086180.2' => 'sly', 'Sopen03g007350' => 'spe', 'Sopen03g007390' => 'spe', 'Sopen03g021000' => 'spe', 'Sopen03g021010' => 'spe', 'Sopen05g034580' => 'spe', 'Sopen09g002720' => 'spe', 'Sopen09g002730' => 'spe', 'Sopen09g002740' => 'spe', 'Sopen09g002750' => 'spe', 'Sopen10g005710' => 'spe', 'Sopen10g035560' => 'spe', 'Sp3g08610' => 'spa', 'Sp4g19350' => 'spa', 'Sp5g09080' => 'spa', 'TAR369G0708' => 'tar', 'TAR624G1211' => 'tar', 'TAR633G2197' => 'tar', 'TAR636G3614' => 'tar', 'THA.LOC104805263' => 'tha', 'THA.LOC104806492' => 'tha', 'THA.LOC104816418' => 'tha', 'THA.LOC104823458' => 'tha', 'Thecc.05G062400' => 'tca', 'Thecc.09G343800' => 'tca', 'Thecc.10G076600' => 'tca', 'Thhalv10006288m.g' => 'esa', 'Thhalv10010153m.g' => 'esa', 'Thhalv10016314m.g' => 'esa', 'Thhalv10020168m.g' => 'esa', 'TPR.G11497' => 'tpr', 'TPR.G11622' => 'tpr', 'TPR.G16033' => 'tpr', 'TPR.G16051' => 'tpr', 'TPR.G16058' => 'tpr', 'TPR.G16065' => 'tpr', 'TPR.G1967' => 'tpr', 'TPR.G35217' => 'tpr', 'TPR.G35895' => 'tpr', 'TPR.G36469' => 'tpr', 'TPR.G9372' => 'tpr', 'TWI38G1740' => 'twi', 'TWI38G1917' => 'twi', 'TWI53G2138' => 'twi', 'TWI63G1305' => 'twi', 'TWI74G1356' => 'twi', 'TWI77G0988' => 'twi', 'unitig_26.g9224' => 'ugi', 'unitig_749.g14273' => 'ugi', 'unitig_749.g14274' => 'ugi', 'unitig_8.g4336' => 'ugi', 'unitig_8.g4337' => 'ugi', 'unitig_8.g4338' => 'ugi', 'vmacro03214' => 'vma', 'vmacro07061' => 'vma', 'vmacro08770' => 'vma', 'vmacro08771' => 'vma', 'vmacro08772' => 'vma', 'VMungo0647G0568' => 'vmu', 'VMungo0720G0549' => 'vmu', 'VMungo0720G2073' => 'vmu', 'VMungo0720G2437' => 'vmu', 'VMungo1383G0800' => 'vmu', 'VMungo1383G2201' => 'vmu', 'Zm00001eb000140' => 'zma', 'Zm00001eb050970' => 'zma', 'Zm00001eb077220' => 'zma', 'Zm00001eb077230' => 'zma', 'Zm00001eb135760' => 'zma', 'Zm00001eb144920' => 'zma', 'Zm00001eb185240' => 'zma', 'Zm00001eb185250' => 'zma', 'Zm00001eb185260' => 'zma', 'Zm00001eb205530' => 'zma', 'Zm00001eb228950' => 'zma', 'Zm00001eb247630' => 'zma', 'Zm00001eb247650' => 'zma', 'Zm00001eb247660' => 'zma', 'Zm00001eb336630' => 'zma', 'Zm00001eb363980' => 'zma', 'Zm00001eb363990' => 'zma', 'Zm00001eb364000' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D000844', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000844' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D000844', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '707', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D000844' ) ), 'genes' => array( 'A04p06200' => 'bna', 'A04p15880' => 'bna', 'A04p28310' => 'bna', 'A05p08780' => 'bna', 'A05p38810' => 'bna', 'A07p21490' => 'bna', 'A09p46290' => 'bna', 'Aa31LG3G2910' => 'aar', 'Aa31LG5G22310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4622' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5205' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.725' => 'aag', 'Actinidia06760' => 'ach', 'Actinidia07153' => 'ach', 'Actinidia13078' => 'ach', 'Actinidia22446' => 'ach', 'Actinidia24116' => 'ach', 'Actinidia31339' => 'ach', 'Actinidia31340' => 'ach', 'Actinidia32439' => 'ach', 'Actinidia32440' => 'ach', 'Actinidia32441' => 'ach', 'Ah.15g092440' => 'amhyb', 'AL3G21670' => 'aly', 'AL4G33370' => 'aly', 'AL5G34170' => 'aly', 'AL6G13850' => 'aly', 'Aqoxy1G01205' => 'aox', 'Aqoxy2G01818' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0B4MFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5H4H17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9CK4GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EEZ4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FI9C9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9Z3VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB2RRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PUMP6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2YH27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULT2JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1SQAY' => 'arhy', 'AT2G37040' => 'ath', 'AT3G10340' => 'ath', 'AT3G53260' => 'ath', 'AT5G04230' => 'ath', 'ATR0048G051' => 'atr', 'ATR0598G039' => 'atr', 'ATR0598G058' => 'atr', 'ATR0598G114' => 'atr', 'ATR0763G117' => 'atr', 'Atru.chr12.710' => 'acertr', 'Atru.chr3.3599' => 'acertr', 'Atru.chr7.1656' => 'acertr', 'Atru.chr8.1402' => 'acertr', 'AUR62039879' => 'cqu', 'AUR62040467' => 'cqu', 'BcaB01g00295' => 'bca', 'BcaB01g03796' => 'bca', 'BcaB01g03798' => 'bca', 'BcaB02g07797' => 'bca', 'BcaB02g08531' => 'bca', 'BcaB02g09307' => 'bca', 'BcaB05g21767' => 'bca', 'BcaB05g21768' => 'bca', 'BcaB06g28973' => 'bca', 'BcaC02g07551' => 'bca', 'BcaC02g07552' => 'bca', 'BcaC02g07553' => 'bca', 'BcaC02g07556' => 'bca', 'BcaC02g09174' => 'bca', 'BcaC02g09175' => 'bca', 'BcaC02g11831' => 'bca', 'BcaC02g12836' => 'bca', 'BcaC03g12950' => 'bca', 'BcaC05g29476' => 'bca', 'BcaC07g39687' => 'bca', 'BcaC07g39688' => 'bca', 'BcaC07g39689' => 'bca', 'BcaNung04594' => 'bca', 'BcaNung06565' => 'bca', 'BolC2t06142H' => 'bol', 'BolC4t22683H' => 'bol', 'BolC4t25500H' => 'bol', 'BolC4t25539H' => 'bol', 'BolC4t26629H' => 'bol', 'BolC4t28059H' => 'bol', 'BolC5t34439H' => 'bol', 'BolC6t37294H' => 'bol', 'BolC8t50456H' => 'bol', 'BraA02t04805Z' => 'bra', 'BraA04t16324Z' => 'bra', 'BraA04t17217Z' => 'bra', 'BraA04t17220Z' => 'bra', 'BraA04t17221Z' => 'bra', 'BraA04t18313Z' => 'bra', 'BraA05t19846Z' => 'bra', 'BraA05t22672Z' => 'bra', 'BraA07t29836Z' => 'bra', 'BraA09t40092Z' => 'bra', 'C02p01850' => 'bna', 'C04p10910' => 'bna', 'C04p39320' => 'bna', 'C04p39330' => 'bna', 'C04p39690' => 'bna', 'C04p39700' => 'bna', 'C04p50310' => 'bna', 'C04p65660' => 'bna', 'C05p57840' => 'bna', 'C06p21090' => 'bna', 'C08p28490' => 'bna', 'CAN.G3578.1' => 'can', 'CAN.G363.12' => 'can', 'CAN.G363.13' => 'can', 'CAN.G363.14' => 'can', 'CAN.G363.7' => 'can', 'CAN.G363.8' => 'can', 'CAN.G509.12' => 'can', 'CAN.G694.92' => 'can', 'CAN.G806.3' => 'can', 'CANSAT56G4207' => 'cansat', 'CANSAT80G0523' => 'cansat', 'CANSAT80G0733' => 'cansat', 'CANSAT80G0924' => 'cansat', 'CANSAT80G1719' => 'cansat', 'CANSAT80G1948' => 'cansat', 'CANSAT80G2016' => 'cansat', 'CARHR084820' => 'chi', 'CARHR131540' => 'chi', 'CARHR289320' => 'chi', 'Carub.0003s0952' => 'cru', 'Carub.0004s1892' => 'cru', 'Carub.0005s1980' => 'cru', 'Ca_06487_v3' => 'car', 'Ca_08848_v3' => 'car', 'Ca_10557_v3' => 'car', 'Ca_11483_v3' => 'car', 'Ca_29940_v3' => 'car', 'CBR_g34530' => 'cbr', 'CBR_g57646' => 'cbr', 'Cc00_g20750' => 'ccan', 'Cc01_g10880' => 'ccan', 'Cc02_g11230' => 'ccan', 'Cc06_g03980' => 'ccan', 'CDE03G0013' => 'cde', 'CDE03G0030' => 'cde', 'CDE03G0232' => 'cde', 'CDE04G0744' => 'cde', 'CDE04G2639' => 'cde', 'CDE04G3431' => 'cde', 'CDE04G3557' => 'cde', 'CDE05G0703' => 'cde', 'CDE05G2606' => 'cde', 'CDE06G0268' => 'cde', 'CDE06G0737' => 'cde', 'CDE06G2597' => 'cde', 'CDE07G0082' => 'cde', 'CDE07G0918' => 'cde', 'CDE07G1529' => 'cde', 'CDE07G1531' => 'cde', 'Cfa001659' => 'cfa', 'Cfa001660' => 'cfa', 'Cfa003036' => 'cfa', 'Cfa003037' => 'cfa', 'Cfa003039' => 'cfa', 'Cfa017574' => 'cfa', 'Ciclev10010874m.g' => 'ccl', 'Ciclev10011134m.g' => 'ccl', 'Ciclev10011175m.g' => 'ccl', 'Ciclev10027912m.g' => 'ccl', 'Ciclev10027913m.g' => 'ccl', 'Ciclev10029946m.g' => 'ccl', 'Ciclev10030821m.g' => 'ccl', 'CiPaw.01G271300' => 'cil', 'CiPaw.02G173200' => 'cil', 'CiPaw.04G145900' => 'cil', 'CiPaw.04G146000' => 'cil', 'CiPaw.04G146100' => 'cil', 'CiPaw.09G174400' => 'cil', 'COL.COLO4_18142' => 'col', 'COL.COLO4_21739' => 'col', 'COL.COLO4_26994' => 'col', 'COL.COLO4_36662' => 'col', 'Cpa.g.c40737' => 'cpa', 'Cpa.g.sc2443.2' => 'cpa', 'Cpa.g.sc311.1' => 'cpa', 'Cpa.g.sc390.3' => 'cpa', 'Cpa.g.sc92.120' => 'cpa', 'CsaV3_1G040750' => 'csa', 'CsaV3_4G002290' => 'csa', 'CsaV3_4G002300' => 'csa', 'CsaV3_4G002310' => 'csa', 'CsaV3_4G002320' => 'csa', 'CsaV3_4G002330' => 'csa', 'CsaV3_6G014060' => 'csa', 'CsaV3_6G036550' => 'csa', 'CsaV3_6G039660' => 'csa', 'CsaV3_6G039670' => 'csa', 'CsaV3_6G039680' => 'csa', 'CsaV3_6G039690' => 'csa', 'CsaV3_6G039700' => 'csa', 'CsaV3_6G039710' => 'csa', 'CsaV3_6G039720' => 'csa', 'CSS0001442' => 'camsi', 'CSS0010367' => 'camsi', 'CSS0018870' => 'camsi', 'CSS0021474' => 'camsi', 'CSS0034802' => 'camsi', 'CSS0041448' => 'camsi', 'CSS0048281' => 'camsi', 'DCAR_014989' => 'dca', 'DCAR_017697' => 'dca', 'DCAR_020833' => 'dca', 'Dinv25385' => 'din', 'Dinv31309' => 'din', 'Dinv31310' => 'din', 'Dinv32720' => 'din', 'Dinv35765' => 'din', 'Dinv36424' => 'din', 'Dinv37296' => 'din', 'Dinv42363' => 'din', 'Duzib093G1956' => 'dzi', 'Duzib106G1669' => 'dzi', 'Duzib106G1705' => 'dzi', 'Duzib114G1045' => 'dzi', 'Duzib128G0518' => 'dzi', 'Duzib128G1271' => 'dzi', 'Duzib168G1200' => 'dzi', 'Duzib168G1693' => 'dzi', 'ECA232G3724' => 'eca', 'ECA233G3222' => 'eca', 'ECA233G6263' => 'eca', 'ECA236G2838' => 'eca', 'ECA238G0266' => 'eca', 'ECA238G0276' => 'eca', 'ECA238G0836' => 'eca', 'ECA238G3831' => 'eca', 'EL10Ac7g16597' => 'bvu', 'Eucgr.A01144' => 'egr', 'Eucgr.C03570' => 'egr', 'Eucgr.G02848' => 'egr', 'Eucgr.G02849' => 'egr', 'Eucgr.G02850' => 'egr', 'Eucgr.G02851' => 'egr', 'Eucgr.G02852' => 'egr', 'Eucgr.J00907' => 'egr', 'Eucgr.J01079' => 'egr', 'FAN01G2698' => 'fan', 'FAN02G0949' => 'fan', 'FAN03G3379' => 'fan', 'FAN06G1111' => 'fan', 'FAN06G2093' => 'fan', 'FAN09G1337' => 'fan', 'FAN10G2818' => 'fan', 'FAN10G2959' => 'fan', 'FAN14G2582' => 'fan', 'FvH4_6g16060' => 'fve', 'FvH4_7g19130' => 'fve', 'Glyma.02G309300' => 'gma', 'Glyma.03G181600' => 'gma', 'Glyma.03G181700' => 'gma', 'Glyma.10G058200' => 'gma', 'Glyma.10G209800' => 'gma', 'Glyma.13G145000' => 'gma', 'Glyma.19G182300' => 'gma', 'Glyma.20G180800' => 'gma', 'Gohir.A01G214800' => 'ghi', 'Gohir.A04G073300' => 'ghi', 'Gohir.A04G073400' => 'ghi', 'Gohir.A06G074800' => 'ghi', 'Gohir.A09G148900' => 'ghi', 'Gohir.A10G204700' => 'ghi', 'Gohir.A11G324340' => 'ghi', 'Gohir.D01G203300' => 'ghi', 'Gohir.D04G112140' => 'ghi', 'Gohir.D04G112180' => 'ghi', 'Gohir.D06G073600' => 'ghi', 'Gohir.D09G144700' => 'ghi', 'Gohir.D10G212700' => 'ghi', 'Gohir.D11G343500' => 'ghi', 'Gorai.002G248000' => 'gra', 'Gorai.006G166000' => 'gra', 'Gorai.007G373600' => 'gra', 'Gorai.007G373700' => 'gra', 'Gorai.009G416300' => 'gra', 'Gorai.009G416400' => 'gra', 'Gorai.010G086000' => 'gra', 'Gorai.011G238400' => 'gra', 'GSVIVG01006148001' => 'vvi', 'GSVIVG01015123001' => 'vvi', 'GSVIVG01015124001' => 'vvi', 'GSVIVG01015138001' => 'vvi', 'GSVIVG01015140001' => 'vvi', 'GSVIVG01016257001' => 'vvi', 'GSVIVG01024292001' => 'vvi', 'GSVIVG01024293001' => 'vvi', 'GSVIVG01024294001' => 'vvi', 'GSVIVG01024295001' => 'vvi', 'GSVIVG01024299001' => 'vvi', 'GSVIVG01024303001' => 'vvi', 'GSVIVG01024305001' => 'vvi', 'GSVIVG01024306001' => 'vvi', 'GSVIVG01024315001' => 'vvi', 'GSVIVG01025214001' => 'vvi', 'GSVIVG01025703001' => 'vvi', 'HanXRQChr02g0052151' => 'han', 'HanXRQChr02g0052221' => 'han', 'HanXRQChr02g0053471' => 'han', 'HanXRQChr07g0195401' => 'han', 'HanXRQChr09g0246871' => 'han', 'HanXRQChr13g0400161' => 'han', 'HanXRQChr13g0400171' => 'han', 'HanXRQChr13g0400191' => 'han', 'HanXRQChr14g0454551' => 'han', 'Haze_16872' => 'cav', 'Haze_16875' => 'cav', 'Haze_16876' => 'cav', 'Haze_20579' => 'cav', 'Haze_25962' => 'cav', 'Hma1.2p1_0205F.1_g087330' => 'hma', 'Hma1.2p1_0307F.1_g119900' => 'hma', 'Hma1.2p1_0366F.1_g136840' => 'hma', 'Hma1.2p1_1356F.1_g277860' => 'hma', 'Hma1.2p1_1458F.1_g284720' => 'hma', 'HPP92_007441' => 'vpl', 'HPP92_007442' => 'vpl', 'HPP92_007443' => 'vpl', 'HPP92_007444' => 'vpl', 'HPP92_007445' => 'vpl', 'HPP92_008607' => 'vpl', 'HPP92_021022' => 'vpl', 'HPP92_021023' => 'vpl', 'Hund12083' => 'sun', 'Hund20258' => 'sun', 'Lalb_Chr01g0004411' => 'lal', 'Lalb_Chr01g0004421' => 'lal', 'Lalb_Chr01g0018751' => 'lal', 'Lalb_Chr02g0142261' => 'lal', 'Lalb_Chr02g0156081' => 'lal', 'Lalb_Chr06g0171571' => 'lal', 'Lalb_Chr06g0171591' => 'lal', 'Lalb_Chr17g0349331' => 'lal', 'Lalb_Chr21g0306151' => 'lal', 'Lalb_Chr25g0289081' => 'lal', 'Lj1g0001296' => 'lja', 'Lj1g0004105' => 'lja', 'Lj1g0004110' => 'lja', 'Lj1g0024768' => 'lja', 'Lj2A1021G43' => 'lonja', 'Lj2A114T40' => 'lonja', 'Lj2A11G48' => 'lonja', 'Lj2C16G3' => 'lonja', 'Lj3A983T60' => 'lonja', 'Lj3g0012710' => 'lja', 'Lj3g0027359' => 'lja', 'Lj5g0006407' => 'lja', 'Lj5g0017962' => 'lja', 'Lj5g0021838' => 'lja', 'Lj6g0027600' => 'lja', 'LjContig00081g0013598' => 'lja', 'Lsat_1_v5_gn_2_106520' => 'lsa', 'Lsat_1_v5_gn_2_106540' => 'lsa', 'Lsat_1_v5_gn_2_42720' => 'lsa', 'Lsat_1_v5_gn_6_31000' => 'lsa', 'Lsat_1_v5_gn_6_31080' => 'lsa', 'Lsat_1_v5_gn_9_68321' => 'lsa', 'Manes.04G018000' => 'mes', 'Manes.07G098700' => 'mes', 'Manes.08G008400' => 'mes', 'Manes.09G063700' => 'mes', 'Manes.10G047500' => 'mes', 'Manes.16G098200' => 'mes', 'Mapoly0005s0086' => 'mpo', 'Mapoly0005s0089' => 'mpo', 'Mapoly0009s0173' => 'mpo', 'Mapoly0014s0211' => 'mpo', 'Mapoly0044s0114' => 'mpo', 'Mapoly0070s0061' => 'mpo', 'Mapoly0070s0065' => 'mpo', 'Mapoly0070s0066' => 'mpo', 'Mapoly0070s0068' => 'mpo', 'Mapoly0070s0069' => 'mpo', 'Mapoly0070s0071' => 'mpo', 'Mapoly0132s0049' => 'mpo', 'Mapoly0142s0036' => 'mpo', 'MBI03_g42616_MAGBIO' => 'mbi', 'MBI10_g06947_MAGBIO' => 'mbi', 'MBI18_g13608_MAGBIO' => 'mbi', 'MBI18_g13609_MAGBIO' => 'mbi', 'MBI18_g22096_MAGBIO' => 'mbi', 'MBI18_g31326_MAGBIO' => 'mbi', 'MBI18_g31327_MAGBIO' => 'mbi', 'MBI18_g39298_MAGBIO' => 'mbi', 'MBI19_g19953_MAGBIO' => 'mbi', 'MD01G1106900' => 'mdo', 'MD03G1121400' => 'mdo', 'MD03G1121500' => 'mdo', 'MD04G1096200' => 'mdo', 'MD07G1172700' => 'mdo', 'MD12G1116700' => 'mdo', 'Medtr1g064090' => 'mtr', 'Medtr1g094780' => 'mtr', 'Medtr2g094960' => 'mtr', 'Medtr2g095010' => 'mtr', 'Medtr5g098720' => 'mtr', 'Medtr7g101395' => 'mtr', 'Medtr7g101425' => 'mtr', 'MELO3C014222.2' => 'cme', 'MELO3C014223.2' => 'cme', 'MELO3C014224.2' => 'cme', 'MELO3C014225.2' => 'cme', 'MELO3C014226.2' => 'cme', 'MELO3C014227.2' => 'cme', 'MELO3C014228.2' => 'cme', 'MELO3C014229.2' => 'cme', 'MELO3C015503.2' => 'cme', 'MELO3C017809.2' => 'cme', 'MELO3C017810.2' => 'cme', 'MELO3C017811.2' => 'cme', 'MELO3C019809.2' => 'cme', 'MELO3C025786.2' => 'cme', 'Migut.F01977' => 'egut', 'Migut.J00542' => 'egut', 'Migut.L01685' => 'egut', 'MSTRG.26703' => 'ama', 'MSTRG.5746' => 'ama', 'Nitab4.5_0000071g0170' => 'nta', 'Nitab4.5_0000101g0270' => 'nta', 'Nitab4.5_0000582g0180' => 'nta', 'Nitab4.5_0000754g0260' => 'nta', 'Nitab4.5_0002130g0010' => 'nta', 'Nitab4.5_0005320g0020' => 'nta', 'Nitab4.5_0008883g0010' => 'nta', 'Nitab4.5_0012382g0010' => 'nta', 'Nitab4.5_0018680g0010' => 'nta', 'Nn1g05489' => 'nnu', 'Nn1g05490' => 'nnu', 'Nn1g05587' => 'nnu', 'Nn2g10960' => 'nnu', 'Nn2g11515' => 'nnu', 'Nn2g13724' => 'nnu', 'Nn3g19423' => 'nnu', 'Nn3g19424' => 'nnu', 'Nn3g20361' => 'nnu', 'Nn3g20362' => 'nnu', 'Nn5g29113' => 'nnu', 'Nn5g29114' => 'nnu', 'Nn6g35574' => 'nnu', 'Nn6g35575' => 'nnu', 'Nn7g36418' => 'nnu', 'Nn7g36876' => 'nnu', 'Nn7g37758' => 'nnu', 'Nn8g38741' => 'nnu', 'Nn8g41259' => 'nnu', 'Oeu014383.1' => 'oeu', 'Oeu015307.1' => 'oeu', 'Oeu036623.1' => 'oeu', 'Oeu045213.2' => 'oeu', 'Oeu050307.1' => 'oeu', 'Oeu055571.1' => 'oeu', 'Oeu055584.1' => 'oeu', 'Os02g0626400' => 'osa', 'Os02g0626600' => 'osa', 'Os02g0627100' => 'osa', 'Os04g0518100' => 'osa', 'Os04g0518400' => 'osa', 'Os05g0427400' => 'osa', 'Os08g0308300' => 'osa', 'Os10g0483700' => 'osa', 'Os11g0708900' => 'osa', 'Os12g0461050' => 'osa', 'Os12g0461300' => 'osa', 'Os12g0520200' => 'osa', 'Peaxi162Scf00123g00096' => 'pax', 'Peaxi162Scf00488g00074' => 'pax', 'Peaxi162Scf00858g00215' => 'pax', 'PGR044G1850' => 'pgr', 'PGR142G4008' => 'pgr', 'PGSC0003DMG400005492' => 'stu', 'PGSC0003DMG400019386' => 'stu', 'PGSC0003DMG400023458' => 'stu', 'PGSC0003DMG400031365' => 'stu', 'PGSC0003DMG400031457' => 'stu', 'PGSC0003DMG401021549' => 'stu', 'PGSC0003DMG401021564' => 'stu', 'PGSC0003DMG402021549' => 'stu', 'PGSC0003DMG402021564' => 'stu', 'Phvul.001G177700' => 'pvu', 'Phvul.001G177800' => 'pvu', 'Phvul.007G096100' => 'pvu', 'Phvul.007G096300' => 'pvu', 'Phvul.007G150500' => 'pvu', 'Phvul.008G289500' => 'pvu', 'Potri.006G126800' => 'ptr', 'Potri.008G038200' => 'ptr', 'Potri.010G224100' => 'ptr', 'Potri.010G224200' => 'ptr', 'Potri.016G091100' => 'ptr', 'Pp3c10_21810' => 'ppa', 'Pp3c11_3080' => 'ppa', 'Pp3c13_12190' => 'ppa', 'Pp3c13_9000' => 'ppa', 'Pp3c14_11870' => 'ppa', 'Pp3c17_7320' => 'ppa', 'Pp3c18_5430' => 'ppa', 'Pp3c19_13690' => 'ppa', 'Pp3c1_18680' => 'ppa', 'Pp3c1_18830' => 'ppa', 'Pp3c1_18940' => 'ppa', 'Pp3c20_4540' => 'ppa', 'Pp3c21_7640' => 'ppa', 'Pp3c21_7670' => 'ppa', 'Pp3c21_7680' => 'ppa', 'Pp3c22_17310' => 'ppa', 'Pp3c22_17320' => 'ppa', 'Pp3c22_17540' => 'ppa', 'Pp3c23_17690' => 'ppa', 'Pp3c23_4450' => 'ppa', 'Pp3c24_13110' => 'ppa', 'Pp3c25_2620' => 'ppa', 'Pp3c26_14610' => 'ppa', 'Pp3c26_2420' => 'ppa', 'Pp3c2_30610' => 'ppa', 'Pp3c2_32330' => 'ppa', 'Pp3c2_32410' => 'ppa', 'Pp3c3_1810' => 'ppa', 'Pp3c7_21960' => 'ppa', 'Pp3c7_24510' => 'ppa', 'Prupe.2G211800' => 'ppe', 'Prupe.6G104500' => 'ppe', 'Prupe.6G235400' => 'ppe', 'Psat0s4534g0080' => 'psa', 'Psat0s4806g0040' => 'psa', 'Psat0s4806g0080' => 'psa', 'Psat1g046920' => 'psa', 'Psat2g001960' => 'psa', 'Psat3g023040' => 'psa', 'Psat3g023120' => 'psa', 'Psat3g040960' => 'psa', 'Psat3g041040' => 'psa', 'Psat3g041080' => 'psa', 'Psat3g072160' => 'psa', 'Psat6g072360' => 'psa', 'Psat6g182520' => 'psa', 'PSO063G0499' => 'pso', 'PSO063G0868' => 'pso', 'PSO063G6937' => 'pso', 'PSO339G2188' => 'pso', 'PSO339G2284' => 'pso', 'PSO421G0737' => 'pso', 'PSO801G0780' => 'pso', 'QL02p061264' => 'qlo', 'QL02p061377' => 'qlo', 'QL07p044148' => 'qlo', 'QL07p044165' => 'qlo', 'QL08p055354' => 'qlo', 'QL93p2013_0042' => 'qlo', 'QL93p2013_0048' => 'qlo', 'RcHm_v2.0_Chr1g0363011' => 'rch', 'RcHm_v2.0_Chr3g0469861' => 'rch', 'RcHm_v2.0_Chr7g0212181' => 'rch', 'Rhsim03G0118900' => 'rsi', 'Rhsim03G0119000' => 'rsi', 'Rhsim03G0119100' => 'rsi', 'Rhsim04G0145800' => 'rsi', 'Rhsim13G0096300' => 'rsi', 'Sabra06G0099900' => 'sbr', 'Sabra08G0025700' => 'sbr', 'Sabra08G0025800' => 'sbr', 'Sabra08G0025900' => 'sbr', 'Sabra10G0173400' => 'sbr', 'Sabra16G0096400' => 'sbr', 'SalBow2G0227' => 'sbo', 'SalBow3G0858' => 'sbo', 'SalBow3G1710' => 'sbo', 'SalBow3G3417' => 'sbo', 'SalBow3G3731' => 'sbo', 'SalBow4G0717' => 'sbo', 'SalBow5G1955' => 'sbo', 'SalBow5G2236' => 'sbo', 'SalBow6G6448' => 'sbo', 'SalBow7G4181' => 'sbo', 'SalBow8G2765' => 'sbo', 'SalBow8G4126' => 'sbo', 'Sc02g0001760' => 'sci', 'Sc09g0006180' => 'sci', 'Sed0003527' => 'sed', 'Sed0007864' => 'sed', 'Sed0008292' => 'sed', 'Sed0012846' => 'sed', 'Sed0013151' => 'sed', 'Sed0015918' => 'sed', 'Sed0018325' => 'sed', 'Sed0018797' => 'sed', 'Sed0023091' => 'sed', 'Sed0025747' => 'sed', 'Sed0026131' => 'sed', 'Sed0026761' => 'sed', 'Sed0026887' => 'sed', 'Sed0027608' => 'sed', 'SEGI_00732' => 'sgi', 'SEGI_06616' => 'sgi', 'SEGI_12036' => 'sgi', 'SEGI_12427' => 'sgi', 'SEGI_18771' => 'sgi', 'SEGI_22248' => 'sgi', 'SEGI_33141' => 'sgi', 'SEGI_38051' => 'sgi', 'SGA_v2.0_scaffold126G33933' => 'sas', 'SGA_v2.0_scaffold35G14141' => 'sas', 'SGA_v2.0_scaffold452G51823' => 'sas', 'SHI12490' => 'shi', 'SMO268G0021' => 'smo', 'Solyc00g500095.1' => 'sly', 'Solyc00g500353.1' => 'sly', 'Solyc03g042560.3' => 'sly', 'Solyc03g071870.1' => 'sly', 'Solyc03g078270.2' => 'sly', 'Solyc03g078280.3' => 'sly', 'Solyc05g056170.3' => 'sly', 'Solyc09g007890.1' => 'sly', 'Solyc09g007900.4' => 'sly', 'Solyc09g007910.4' => 'sly', 'Solyc09g007920.4' => 'sly', 'Solyc10g011920.3' => 'sly', 'Solyc10g011925.1' => 'sly', 'Solyc10g011930.1' => 'sly', 'Solyc10g086180.2' => 'sly', 'Sopen03g007350' => 'spe', 'Sopen03g007390' => 'spe', 'Sopen03g021000' => 'spe', 'Sopen03g021010' => 'spe', 'Sopen05g034580' => 'spe', 'Sopen09g002720' => 'spe', 'Sopen09g002730' => 'spe', 'Sopen09g002740' => 'spe', 'Sopen09g002750' => 'spe', 'Sopen10g005710' => 'spe', 'Sopen10g035560' => 'spe', 'Sp3g08610' => 'spa', 'Sp4g19350' => 'spa', 'Sp5g09080' => 'spa', 'TAR369G0708' => 'tar', 'TAR624G1211' => 'tar', 'TAR633G2197' => 'tar', 'TAR636G3614' => 'tar', 'THA.LOC104805263' => 'tha', 'THA.LOC104806492' => 'tha', 'THA.LOC104816418' => 'tha', 'THA.LOC104823458' => 'tha', 'Thecc.05G062400' => 'tca', 'Thecc.09G343800' => 'tca', 'Thecc.10G076600' => 'tca', 'Thhalv10006288m.g' => 'esa', 'Thhalv10010153m.g' => 'esa', 'Thhalv10016314m.g' => 'esa', 'Thhalv10020168m.g' => 'esa', 'TPR.G11497' => 'tpr', 'TPR.G11622' => 'tpr', 'TPR.G16033' => 'tpr', 'TPR.G16051' => 'tpr', 'TPR.G16058' => 'tpr', 'TPR.G16065' => 'tpr', 'TPR.G1967' => 'tpr', 'TPR.G35217' => 'tpr', 'TPR.G35895' => 'tpr', 'TPR.G36469' => 'tpr', 'TPR.G9372' => 'tpr', 'TWI38G1740' => 'twi', 'TWI38G1917' => 'twi', 'TWI53G2138' => 'twi', 'TWI63G1305' => 'twi', 'TWI74G1356' => 'twi', 'TWI77G0988' => 'twi', 'unitig_26.g9224' => 'ugi', 'unitig_749.g14273' => 'ugi', 'unitig_749.g14274' => 'ugi', 'unitig_8.g4336' => 'ugi', 'unitig_8.g4337' => 'ugi', 'unitig_8.g4338' => 'ugi', 'vmacro03214' => 'vma', 'vmacro07061' => 'vma', 'vmacro08770' => 'vma', 'vmacro08771' => 'vma', 'vmacro08772' => 'vma', 'VMungo0647G0568' => 'vmu', 'VMungo0720G0549' => 'vmu', 'VMungo0720G2073' => 'vmu', 'VMungo0720G2437' => 'vmu', 'VMungo1383G0800' => 'vmu', 'VMungo1383G2201' => 'vmu', 'Zm00001eb000140' => 'zma', 'Zm00001eb050970' => 'zma', 'Zm00001eb077220' => 'zma', 'Zm00001eb077230' => 'zma', 'Zm00001eb135760' => 'zma', 'Zm00001eb144920' => 'zma', 'Zm00001eb185240' => 'zma', 'Zm00001eb185250' => 'zma', 'Zm00001eb185260' => 'zma', 'Zm00001eb205530' => 'zma', 'Zm00001eb228950' => 'zma', 'Zm00001eb247630' => 'zma', 'Zm00001eb247650' => 'zma', 'Zm00001eb247660' => 'zma', 'Zm00001eb336630' => 'zma', 'Zm00001eb363980' => 'zma', 'Zm00001eb363990' => 'zma', 'Zm00001eb364000' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D000844' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000844' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D000844' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D000844' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151