Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 6.5e-134 480.7 239 100.0
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.5e-98 363.2 240 74.2
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 5.9e-95 351.3 230 72.2
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 8.5e-94 347.4 233 73.8
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 3.7e-89 332.0 232 69.0
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 4.8e-89 331.6 231 70.1
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 1.6e-87 326.6 233 68.2
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 2.7e-87 325.9 232 68.5
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 1.7e-86 323.2 239 66.1
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.3e-86 322.8 235 68.5
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 2.9e-86 322.4 233 67.8
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 3.8e-86 322.0 233 67.8
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 4.2e-85 318.5 232 65.5
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 4.2e-85 318.5 232 65.1
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 7.2e-85 317.8 233 67.4
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 1.0e-83 313.9 233 66.1
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 1.4e-83 313.5 232 64.7
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 6.8e-83 311.2 233 64.8
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 1.5e-82 310.1 233 65.2
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.0e-82 309.7 233 63.5
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 4.4e-82 308.5 233 62.2
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 9.8e-82 307.4 230 64.8
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.3e-81 307.0 233 63.9
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 1.8e-80 303.1 233 62.7
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 2.7e-79 299.3 233 63.9
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 2.7e-79 299.3 237 62.4
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 3.5e-79 298.9 230 60.4
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 4.5e-79 298.5 240 61.7
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 4.5e-79 298.5 240 62.1
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 1.0e-78 297.4 233 63.5
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 1.0e-78 297.4 230 60.4
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.7e-78 296.6 232 60.8
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 2.3e-78 296.2 239 62.3
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 2.3e-78 296.2 230 60.0
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 8.6e-78 294.3 230 58.3
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.9e-77 293.1 240 61.7
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 3.3e-77 292.4 236 63.6
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 2.8e-76 289.3 225 63.1
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.3e-75 286.2 234 62.0
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 5.2e-75 285.0 232 58.2
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 2.0e-74 283.1 234 62.8
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 3.4e-74 282.3 228 59.6
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 5.8e-74 281.6 236 60.6
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 7.5e-74 281.2 238 60.1
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 2.9e-73 279.3 200 67.5
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 4.9e-73 278.5 242 59.5
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 4.9e-73 278.5 200 69.0
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 8.3e-73 277.7 238 58.0
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 8.3e-73 277.7 231 57.1
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 1.1e-72 277.3 231 57.6
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.1e-72 277.3 233 56.7
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 4.1e-72 275.4 233 58.8
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 5.4e-72 275.0 232 59.1
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.2e-71 273.9 231 56.7
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 1.6e-71 273.5 232 56.0
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 1.3e-70 270.4 239 54.8
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 3.0e-70 269.2 233 55.8
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 1.1e-69 267.3 231 56.7
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 5.6e-69 265.0 233 56.2
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 9.5e-69 264.2 237 59.1
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 2.1e-68 263.1 237 59.1
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 2.1e-68 263.1 154 79.2
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.8e-68 262.7 237 58.6
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.8e-68 262.7 237 58.6
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 1.4e-67 260.4 230 54.8
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 2.3e-67 259.6 230 55.2
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 3.1e-67 259.2 204 64.2
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 8.9e-67 257.7 233 56.2
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 8.9e-67 257.7 233 56.2
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.2e-66 257.3 233 56.2
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 1.5e-66 256.9 232 56.9
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 1.5e-66 256.9 233 56.2
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.6e-66 256.1 240 55.4
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 6.4e-65 251.5 245 56.3
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 8.3e-65 251.1 231 53.2
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 1.1e-64 250.8 240 54.6
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.4e-64 250.4 231 54.1
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 1.9e-64 250.0 203 58.6
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 4.1e-64 248.8 227 55.1
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 9.2e-64 247.7 233 54.5
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 1.2e-63 247.3 240 54.2
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 1.6e-63 246.9 226 57.1
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 2.0e-63 246.5 242 54.5
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 2.0e-63 246.5 233 53.2
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 2.7e-63 246.1 234 52.6
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 3.5e-63 245.7 231 53.2
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 6.0e-63 245.0 215 57.2
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 1.3e-62 243.8 232 51.3
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 2.3e-62 243.0 224 51.8
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 3.0e-62 242.7 231 51.9
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 5.0e-62 241.9 234 53.4
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 6.6e-62 241.5 233 53.6
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.1e-61 240.7 231 52.4
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 2.5e-61 239.6 231 52.8
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 6.2e-60 235.0 236 53.0
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 1.8e-59 233.4 197 57.4
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 8.9e-59 231.1 236 53.0
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 1.5e-58 230.3 231 51.9
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 2.0e-58 229.9 231 49.4
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 9.9e-58 227.6 232 48.3
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 4.9e-57 225.3 232 48.3
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 4.9e-57 225.3 232 48.3
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 6.4e-57 224.9 234 50.9
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 6.4e-57 224.9 241 47.3
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 8.3e-57 224.6 232 49.1
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 1.4e-56 223.8 232 49.6
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 1.9e-56 223.4 232 47.4
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 2.4e-56 223.0 232 47.4
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 2.4e-56 223.0 232 47.4
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 3.2e-56 222.6 234 48.7
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 5.4e-56 221.9 235 49.4
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 2.7e-55 219.5 203 53.7
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 6.0e-55 218.4 203 53.7
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 7.8e-55 218.0 239 46.9
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 3.9e-54 215.7 230 47.8
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 1.9e-53 213.4 233 46.4
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 2.1e-52 209.9 233 48.1
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 2.4e-51 206.5 223 49.3
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 1.2e-50 204.1 154 59.7
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 1.5e-50 203.8 226 43.4
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 3.4e-50 202.6 216 50.5
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 1.3e-49 200.7 241 44.8
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 2.2e-49 199.9 217 46.1
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 2.2e-49 199.9 237 46.4
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 2.9e-49 199.5 233 44.2
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 1.4e-48 197.2 234 44.4
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 4.1e-48 195.7 234 45.7
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 4.1e-48 195.7 231 45.0
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 9.2e-48 194.5 234 47.0
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 9.2e-48 194.5 194 51.0
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 2.1e-47 193.4 234 44.0
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 3.5e-47 192.6 231 43.3
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 7.8e-47 191.4 218 43.6
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 7.8e-47 191.4 190 56.3
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 1.0e-46 191.0 155 58.7
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 1.3e-46 190.7 174 56.9
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 3.0e-46 189.5 234 44.9
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.9e-45 186.8 166 52.4
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 4.3e-45 185.7 152 55.9
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 1.2e-44 184.1 230 39.6
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 1.6e-44 183.7 232 47.0
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 1.6e-44 183.7 222 40.1
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 6.2e-44 181.8 147 58.5
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 8.1e-44 181.4 187 49.7
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 8.1e-44 181.4 232 38.8
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 2.0e-42 176.8 89 96.6
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 2.6e-42 176.4 234 41.9
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 2.9e-41 172.9 145 57.9
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 6.4e-41 171.8 178 47.2
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 1.1e-40 171.0 232 42.2
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 1.1e-40 171.0 232 42.2
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 4.2e-40 169.1 116 71.6
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 1.3e-38 164.1 217 39.2
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 3.0e-38 162.9 122 63.9
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 8.7e-38 161.4 217 39.2
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 7.3e-37 158.3 210 45.7
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 2.4e-35 153.3 227 35.2
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 4.5e-34 149.1 117 64.1
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 7.6e-34 148.3 191 37.7
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 7.9e-31 138.3 139 50.4
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.6e-28 130.6 200 41.5
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 3.2e-24 116.3 125 50.4
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.0e-23 112.1 144 45.8
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.0e-22 111.3 221 35.7
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.8e-22 110.5 92 57.6
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 2.3e-22 110.2 127 50.4
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 2.3e-22 110.2 83 62.7
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 3.0e-22 109.8 92 52.2
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 8.7e-22 108.2 78 64.1
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 8.7e-22 108.2 193 38.9
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 1.9e-21 107.1 91 56.0
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 7.6e-18 95.1 171 33.9
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 3.8e-17 92.8 80 55.0
TAR636G2069 Trochodendron aralioides HOM05D003762 ORTHO05D004374 4.9e-17 92.4 66 75.8
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 1.0e-14 84.7 117 39.3
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 1.8e-14 84.0 99 44.4
Nitab4.5_0009310g0070 Nicotiana tabacum HOM05D003419 ORTHO05D004374 5.7e-13 79.0 93 51.6
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 9.7e-13 78.2 66 54.5
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 3.1e-11 73.2 78 41.0
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 2.0e-10 70.5 99 37.4
Nitab4.5_0004267g0010 Nicotiana tabacum HOM05D003762 ORTHO05D004374 2.7e-07 60.1 76 44.7


User provided reference genes

Program Settings