Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 5.0e-188 661.0 346 100.0
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 5.2e-108 395.2 237 90.7
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 9.1e-97 357.8 181 100.0
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 1.6e-72 277.3 178 75.3
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 3.1e-68 263.1 599 34.2
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.5e-67 260.8 171 71.9
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 1.7e-66 257.3 173 68.8
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 2.9e-66 256.5 172 71.5
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 9.2e-65 251.5 178 66.3
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 1.2e-64 251.1 187 64.2
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 3.0e-63 246.5 268 52.2
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 3.9e-63 246.1 216 58.3
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 6.6e-63 245.4 340 43.8
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 8.6e-63 245.0 173 67.6
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 1.5e-62 244.2 164 69.5
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.5e-62 243.4 230 55.7
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 4.3e-62 242.7 171 67.3
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 4.3e-62 242.7 221 56.1
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 5.6e-62 242.3 172 68.6
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 5.6e-62 242.3 170 68.8
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 1.2e-61 241.1 177 64.4
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 1.6e-61 240.7 224 56.7
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.6e-61 240.7 224 56.7
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.6e-61 240.7 170 67.1
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 1.6e-61 240.7 236 56.8
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 2.1e-61 240.4 175 66.9
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 4.7e-61 239.2 176 65.9
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 8.1e-61 238.4 169 66.9
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 1.1e-60 238.0 175 66.3
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 1.4e-60 237.7 174 63.2
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 1.8e-60 237.3 226 55.8
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 5.2e-60 235.7 226 54.4
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 6.8e-60 235.3 273 48.0
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 1.5e-59 234.2 171 67.8
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 1.5e-59 234.2 171 67.8
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 2.6e-59 233.4 167 67.1
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 3.4e-59 233.0 217 59.0
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 4.4e-59 232.6 230 54.3
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 9.9e-59 231.5 272 48.5
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 9.9e-59 231.5 172 62.8
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 1.3e-58 231.1 168 68.5
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 2.2e-58 230.3 171 68.4
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 6.4e-58 228.8 240 52.9
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 8.4e-58 228.4 168 64.3
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 8.4e-58 228.4 247 51.0
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 1.1e-57 228.0 165 67.9
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 2.4e-57 226.9 271 48.0
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 3.2e-57 226.5 173 61.3
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 2.7e-56 223.4 172 61.0
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 2.7e-56 223.4 171 65.5
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 2.7e-56 223.4 174 62.6
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 3.5e-56 223.0 172 61.6
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 4.6e-56 222.6 231 54.5
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 4.6e-56 222.6 231 54.5
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 1.0e-55 221.5 172 61.0
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 1.7e-55 220.7 168 61.3
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 3.0e-55 219.9 221 50.7
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 5.1e-55 219.2 218 53.2
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 6.6e-55 218.8 168 63.1
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 1.5e-54 217.6 181 59.7
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 2.5e-54 216.9 171 60.8
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 7.3e-54 215.3 165 66.1
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 7.3e-54 215.3 176 58.0
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 1.2e-53 214.5 166 64.5
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 1.6e-53 214.2 237 50.2
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 3.6e-53 213.0 223 51.6
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 4.7e-53 212.6 266 45.1
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 4.7e-53 212.6 222 52.3
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 4.7e-53 212.6 171 59.1
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 8.1e-53 211.8 223 50.7
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 1.4e-52 211.1 267 45.3
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.4e-52 211.1 221 48.4
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 2.4e-52 210.3 166 62.7
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 3.1e-52 209.9 172 61.0
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 4.0e-52 209.5 167 65.9
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 6.9e-52 208.8 171 59.6
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 9.0e-52 208.4 169 60.4
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 9.0e-52 208.4 218 50.0
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 1.5e-51 207.6 172 60.5
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 2.6e-51 206.8 258 46.5
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 2.6e-51 206.8 223 49.8
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 4.4e-51 206.1 217 50.7
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 4.9e-50 202.6 225 49.8
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 1.1e-49 201.4 218 48.6
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 2.4e-49 200.3 166 56.6
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 5.4e-49 199.1 234 46.2
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.7e-47 194.1 227 48.0
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 5.1e-47 192.6 225 47.6
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 4.3e-46 189.5 169 56.8
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 2.1e-45 187.2 167 60.5
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 6.2e-45 185.7 171 50.3
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 6.9e-44 182.2 167 53.3
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 2.6e-43 180.3 214 48.6
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 1.3e-42 177.9 144 63.2
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 2.2e-42 177.2 164 52.4
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 1.4e-41 174.5 174 51.1
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 2.4e-41 173.7 173 48.0
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 1.6e-40 171.0 166 48.2
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 7.9e-40 168.7 173 48.6
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 1.3e-39 167.9 163 47.9
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 2.3e-39 167.2 220 40.9
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 2.3e-39 167.2 168 49.4
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 3.0e-39 166.8 167 46.7
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 3.0e-39 166.8 167 46.7
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 8.7e-39 165.2 167 46.7
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 2.1e-37 160.6 337 32.0
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 4.8e-37 159.5 107 66.4
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 6.2e-37 159.1 241 35.7
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 1.1e-36 158.3 336 31.5
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 1.1e-36 158.3 232 34.9
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 6.0e-32 142.5 241 36.1
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 6.2e-29 132.5 88 67.0
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 6.2e-29 132.5 88 67.0
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 1.0e-26 125.2 80 73.8
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 4.9e-26 122.9 147 46.3
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 6.5e-26 122.5 161 41.6
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 1.1e-25 121.7 131 49.6
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 4.2e-25 119.8 161 41.6
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 9.3e-25 118.6 230 33.9
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 6.7e-23 112.5 159 42.8
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 2.2e-21 107.5 144 43.8
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 3.7e-21 106.7 142 42.3
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.1e-20 105.1 161 39.1
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 2.9e-18 97.1 239 29.3
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 2.9e-18 97.1 239 29.3
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 2.9e-18 97.1 239 29.3
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 5.5e-17 92.8 231 30.3
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 7.2e-17 92.4 288 26.0
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 7.2e-17 92.4 288 26.0
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.0e-15 88.6 126 46.8
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 9.7e-14 82.0 175 30.3
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 8.2e-13 79.0 153 28.8
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.4e-12 78.2 110 50.0
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 1.8e-12 77.8 51 74.5
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 1.0e-07 62.0 53 52.8
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 8.8e-07 58.9 61 54.1


User provided reference genes

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