Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05105 Nelumbo nucifera HOM05D004514 ORTHO05D005147 2.1e-31 138.3 65 100.0
Nitab4.5_0010179g0030 Nicotiana tabacum HOM05D004514 ORTHO05D005147 5.1e-17 90.5 56 76.8
TAR371G0381 Trochodendron aralioides HOM05D004514 ORTHO05D005147 6.7e-17 90.1 59 72.9
CiPaw.12G044700 Carya illinoinensis HOM05D004514 ORTHO05D005147 1.1e-16 89.4 59 72.9
Migut.I00550 Erythranthe guttata HOM05D004514 ORTHO05D005147 1.9e-16 88.6 49 81.6
MSTRG.11268 Avicennia marina HOM05D004514 ORTHO05D005147 2.5e-16 88.2 49 83.7
Haze_07164 Corylus avellana HOM05D004514 ORTHO05D005147 2.5e-16 88.2 61 68.9
Lj5C94G12 Lonicera japonica HOM05D004514 ORTHO05D005147 2.5e-16 88.2 49 85.7
Nitab4.5_0003367g0080 Nicotiana tabacum HOM05D004514 ORTHO05D005147 4.3e-16 87.4 49 83.7
Carub.0007s1612 Capsella rubella HOM05D004514 ORTHO05D005147 5.7e-16 87.0 50 78.0
Oeu058090.2 Olea europaea HOM05D004514 ORTHO05D005147 7.4e-16 86.7 50 78.0
Rhsim08G0191700 Rhododendron simsii HOM05D004514 ORTHO05D005147 7.4e-16 86.7 59 74.6
Thhalv10025730m.g Eutrema salsugineum HOM05D004514 ORTHO05D005147 9.6e-16 86.3 50 78.0
GSVIVG01008554001 Vitis vinifera HOM05D004514 ORTHO05D005147 9.6e-16 86.3 59 71.2
CAN.G65.55 Capsicum annuum HOM05D004514 ORTHO05D005147 1.3e-15 85.9 49 81.6
Sopen06g028370 Solanum pennellii HOM05D004514 ORTHO05D005147 1.3e-15 85.9 49 81.6
PGSC0003DMG400026973 Solanum tuberosum HOM05D004514 ORTHO05D005147 1.6e-15 85.5 49 81.6
Ciclev10032114m.g Citrus clementina HOM05D004514 ORTHO05D005147 2.1e-15 85.1 50 76.0
Peaxi162Scf00763g00222 Petunia axillaris HOM05D004514 ORTHO05D005147 2.1e-15 85.1 50 80.0
vmacro19126 Vaccinium macrocarpon HOM05D004514 ORTHO05D005147 2.1e-15 85.1 59 72.9
SGA_v2.0_scaffold383G50415 Striga asiatica HOM05D004514 ORTHO05D005147 2.8e-15 84.7 49 75.5
Lj4g0011293 Lotus japonicus HOM05D004514 ORTHO05D005147 3.7e-15 84.3 64 60.9
Medtr8g096740 Medicago truncatula HOM05D004514 ORTHO05D005147 3.7e-15 84.3 50 74.0
Sp7g22920 Schrenkiella parvula HOM05D004514 ORTHO05D005147 3.7e-15 84.3 50 78.0
CsaV3_1G009770 Cucumis sativus L. HOM05D004514 ORTHO05D005147 4.8e-15 84.0 58 72.4
Glyma.08G011400 Glycine max HOM05D004514 ORTHO05D005147 4.8e-15 84.0 50 72.0
CAN.G861.4 Capsicum annuum HOM05D004514 ORTHO05D005147 6.3e-15 83.6 49 79.6
CARHR232340 Cardamine hirsuta HOM05D004514 ORTHO05D005147 6.3e-15 83.6 59 67.8
SGA_v2.0_scaffold40G15556 Striga asiatica HOM05D004514 ORTHO05D005147 6.3e-15 83.6 49 77.6
TPR.G12790 Trifolium pratense HOM05D004514 ORTHO05D005147 6.3e-15 83.6 50 74.0
Actinidia25561 Actinidia chinensis HOM05D004514 ORTHO05D005147 8.2e-15 83.2 59 71.2
Hma1.2p1_0014F.1_g009230 Hydrangea macrophylla HOM05D004514 ORTHO05D005147 8.2e-15 83.2 49 81.6
Lalb_Chr12g0202281 Lupinus albus HOM05D004514 ORTHO05D005147 8.2e-15 83.2 57 64.9
QL10p002475 Quercus lobata HOM05D004514 ORTHO05D005147 8.2e-15 83.2 58 69.0
PGSC0003DMG400015268 Solanum tuberosum HOM05D004514 ORTHO05D005147 8.2e-15 83.2 49 79.6
arahy.Tifrunner.gnm1.ann1.V9PUN9 Arachis hypogaea HOM05D004514 ORTHO05D005147 1.1e-14 82.8 50 70.0
Psat7g036440 Pisum sativum HOM05D004514 ORTHO05D005147 1.1e-14 82.8 50 72.0
THA.LOC104806080 Tarenaya hassleriana HOM05D004514 ORTHO05D005147 1.1e-14 82.8 50 74.0
AL7G28260 Arabidopsis lyrata HOM05D004514 ORTHO05D005147 1.8e-14 82.0 50 72.0
A01p16230 Brassica napus HOM05D004514 ORTHO05D005147 1.8e-14 82.0 50 74.0
C01p20220 Brassica napus HOM05D004514 ORTHO05D005147 1.8e-14 82.0 50 74.0
BolC1t01951H Brassica oleracea HOM05D004514 ORTHO05D005147 1.8e-14 82.0 50 74.0
BraA01t01559Z Brassica rapa HOM05D004514 ORTHO05D005147 1.8e-14 82.0 50 74.0
Glyma.05G204000 Glycine max HOM05D004514 ORTHO05D005147 1.8e-14 82.0 50 72.0
BcaB03g12450 Brassica carinata HOM05D004514 ORTHO05D005147 2.4e-14 81.6 50 76.0
BcaNung07127 Brassica carinata HOM05D004514 ORTHO05D005147 2.4e-14 81.6 50 74.0
Nitab4.5_0000477g0040 Nicotiana tabacum HOM05D004514 ORTHO05D005147 2.4e-14 81.6 49 77.6
unitig_22.g6250 Utricularia gibba HOM05D004514 ORTHO05D005147 2.4e-14 81.6 49 75.5
Aa31LG7G10850 Aethionema arabicum HOM05D004514 ORTHO05D005147 3.1e-14 81.3 50 72.0
ClCG03G003890 Citrullus lanatus HOM05D004514 ORTHO05D005147 3.1e-14 81.3 58 69.0
MELO3C002371.2 Cucumis melo HOM05D004514 ORTHO05D005147 3.1e-14 81.3 58 67.2
Peaxi162Scf00089g00124 Petunia axillaris HOM05D004514 ORTHO05D005147 3.1e-14 81.3 49 77.6
FAN08G2687 Fragaria x ananassa HOM05D004514 ORTHO05D005147 4.1e-14 80.9 51 72.5
HanXRQChr09g0273381 Helianthus annuus HOM05D004514 ORTHO05D005147 5.3e-14 80.5 49 77.6
Lj4g0022972 Lotus japonicus HOM05D004514 ORTHO05D005147 5.3e-14 80.5 50 70.0
Sc04g0000510 Simmondsia chinensis HOM05D004514 ORTHO05D005147 5.3e-14 80.5 50 70.0
Aqoxy5G03306 Aquilegia oxysepala HOM05D004514 ORTHO05D005147 6.9e-14 80.1 50 72.0
arahy.Tifrunner.gnm1.ann1.PL1S0I Arachis hypogaea HOM05D004514 ORTHO05D005147 6.9e-14 80.1 50 68.0
CSS0037403 Camellia sinensis var. sinensis HOM05D004514 ORTHO05D005147 6.9e-14 80.1 49 77.6
MD06G1138700 Malus domestica HOM05D004514 ORTHO05D005147 6.9e-14 80.1 50 74.0
Phvul.002G285900 Phaseolus vulgaris HOM05D004514 ORTHO05D005147 6.9e-14 80.1 50 72.0
Potri.012G100800 Populus trichocarpa HOM05D004514 ORTHO05D005147 6.9e-14 80.1 50 76.0
Sabra12G0074100 Salix brachista HOM05D004514 ORTHO05D005147 6.9e-14 80.1 50 76.0
SalBow5G3630 Salvia bowleyana HOM05D004514 ORTHO05D005147 6.9e-14 80.1 49 73.5
SalBow5G5364 Salvia bowleyana HOM05D004514 ORTHO05D005147 6.9e-14 80.1 49 73.5
Solyc03g019730.4 Solanum lycopersicum HOM05D004514 ORTHO05D005147 6.9e-14 80.1 49 77.6
Sopen03g029890 Solanum pennellii HOM05D004514 ORTHO05D005147 6.9e-14 80.1 49 77.6
CDE06G0772 Ceratophyllum demersum HOM05D004514 ORTHO05D005147 9.0e-14 79.7 49 73.5
Lalb_Chr07g0183531 Lupinus albus HOM05D004514 ORTHO05D005147 1.2e-13 79.3 50 70.0
COL.COLO4_06539 Corchorus olitorius HOM05D004514 ORTHO05D005147 1.5e-13 79.0 50 74.0
FvH4_5g08600 Fragaria vesca HOM05D004514 ORTHO05D005147 1.5e-13 79.0 50 72.0
FAN04G1407 Fragaria x ananassa HOM05D004514 ORTHO05D005147 1.5e-13 79.0 50 72.0
FAN13G0104 Fragaria x ananassa HOM05D004514 ORTHO05D005147 1.5e-13 79.0 50 72.0
FAN18G1834 Fragaria x ananassa HOM05D004514 ORTHO05D005147 1.5e-13 79.0 50 72.0
Potri.015G099000 Populus trichocarpa HOM05D004514 ORTHO05D005147 1.5e-13 79.0 50 76.0
Thecc.03G131800 Theobroma cacao HOM05D004514 ORTHO05D005147 1.5e-13 79.0 50 72.0
Prupe.5G148900 Prunus persica HOM05D004514 ORTHO05D005147 2.0e-13 78.6 50 76.0
RcHm_v2.0_Chr7g0189801 Rosa chinensis HOM05D004514 ORTHO05D005147 2.0e-13 78.6 50 72.0
Lsat_1_v5_gn_3_53020 Lactuca sativa HOM05D004514 ORTHO05D005147 2.6e-13 78.2 49 75.5
Lsat_1_v5_gn_4_81560 Lactuca sativa HOM05D004514 ORTHO05D005147 2.6e-13 78.2 49 75.5
Lsat_1_v5_gn_9_91580 Lactuca sativa HOM05D004514 ORTHO05D005147 2.6e-13 78.2 49 75.5
MBI11_g22694_MAGBIO Magnolia biondii HOM05D004514 ORTHO05D005147 2.6e-13 78.2 45 75.6
MD14G1154700 Malus domestica HOM05D004514 ORTHO05D005147 2.6e-13 78.2 50 72.0
AT4G24940 Arabidopsis thaliana HOM05D004514 ORTHO05D005147 3.4e-13 77.8 50 70.0
Carub.0008s1067 Capsella rubella HOM05D004514 ORTHO05D005147 3.4e-13 77.8 50 68.0
ECA232G1789 Erigeron canadensis HOM05D004514 ORTHO05D005147 3.4e-13 77.8 49 75.5
Gohir.A12G190300 Gossypium hirsutum HOM05D004514 ORTHO05D005147 3.4e-13 77.8 50 72.0
Gohir.D12G192600 Gossypium hirsutum HOM05D004514 ORTHO05D005147 3.4e-13 77.8 50 72.0
Gorai.008G207100 Gossypium raimondii HOM05D004514 ORTHO05D005147 3.4e-13 77.8 50 72.0
Os11g0497000 Oryza sativa ssp. japonica HOM05D004514 ORTHO05D005147 3.4e-13 77.8 50 70.0
PGR044G2046 Punica granatum HOM05D004514 ORTHO05D005147 3.4e-13 77.8 50 74.0
AT5G50580 Arabidopsis thaliana HOM05D004514 ORTHO05D005147 4.5e-13 77.4 50 68.0
AT5G50680 Arabidopsis thaliana HOM05D004514 ORTHO05D005147 4.5e-13 77.4 50 68.0
Cc01_g02400 Coffea canephora HOM05D004514 ORTHO05D005147 4.5e-13 77.4 49 73.5
Sabra15G0119900 Salix brachista HOM05D004514 ORTHO05D005147 4.5e-13 77.4 50 74.0
TWI23G1308 Tripterygium wilfordii HOM05D004514 ORTHO05D005147 4.5e-13 77.4 59 62.7
Actinidia18339 Actinidia chinensis HOM05D004514 ORTHO05D005147 5.9e-13 77.0 48 77.1
VMungo0251G2558 Vigna mungo HOM05D004514 ORTHO05D005147 7.6e-13 76.6 50 68.0
Cpa.g.sc1141.1 Carica papaya HOM05D004514 ORTHO05D005147 1.0e-12 76.3 50 68.0
Manes.06G121000 Manihot esculenta HOM05D004514 ORTHO05D005147 1.0e-12 76.3 59 61.0
EL10Ac2g03710 Beta vulgaris HOM05D004514 ORTHO05D005147 1.3e-12 75.9 50 70.0
Eucgr.K02707 Eucalyptus grandis HOM05D004514 ORTHO05D005147 1.3e-12 75.9 59 64.4
Nn7g36518 Nelumbo nucifera HOM05D004514 ORTHO05D005147 1.3e-12 75.9 40 90.0
Sed0020700 Sechium edule HOM05D004514 ORTHO05D005147 1.3e-12 75.9 50 70.0
Ah.11g044000 Amaranthus hybridus HOM05D004514 ORTHO05D005147 1.7e-12 75.5 50 66.0
Atru.chr5.373 Acer truncatum HOM05D004514 ORTHO05D005147 2.2e-12 75.1 50 66.0
AL8G24840 Arabidopsis lyrata HOM05D004514 ORTHO05D005147 2.2e-12 75.1 50 66.0
Sp6g12760 Schrenkiella parvula HOM05D004514 ORTHO05D005147 2.2e-12 75.1 50 66.0
Sed0016514 Sechium edule HOM05D004514 ORTHO05D005147 2.2e-12 75.1 50 62.0
ATR0561G084 Amborella trichopoda HOM05D004514 ORTHO05D005147 2.9e-12 74.7 50 68.0
arahy.Tifrunner.gnm1.ann1.C7Z4ET Arachis hypogaea HOM05D004514 ORTHO05D005147 2.9e-12 74.7 50 64.0
AUR62038747 Chenopodium quinoa HOM05D004514 ORTHO05D005147 2.9e-12 74.7 50 70.0
Ca_17561_v3 Cicer arietinum L. HOM05D004514 ORTHO05D005147 3.8e-12 74.3 45 68.9
Dinv23167 Davidia involucrata HOM05D004514 ORTHO05D005147 3.8e-12 74.3 59 67.8
Hund02453 Selenicereus undatus HOM05D004514 ORTHO05D005147 3.8e-12 74.3 50 70.0
Manes.14G049500 Manihot esculenta HOM05D004514 ORTHO05D005147 5.0e-12 73.9 59 64.4
PSO478G4665 Papaver somniferum HOM05D004514 ORTHO05D005147 5.0e-12 73.9 50 68.0
CARHR257690 Cardamine hirsuta HOM05D004514 ORTHO05D005147 6.5e-12 73.6 50 66.0
AUR62020635 Chenopodium quinoa HOM05D004514 ORTHO05D005147 6.5e-12 73.6 50 68.0
Zm00001eb169400 Zea mays HOM05D004514 ORTHO05D005147 6.5e-12 73.6 50 68.0
PSO017G0632 Papaver somniferum HOM05D004514 ORTHO05D005147 8.4e-12 73.2 50 68.0
Duzib084G0819 Durio zibethinus HOM05D004514 ORTHO05D005147 1.9e-11 72.0 50 66.0
CANSAT80G0288 Cannabis sativa HOM05D004514 ORTHO05D005147 2.5e-11 71.6 50 70.0
CANSAT80G1302 Cannabis sativa HOM05D004514 ORTHO05D005147 2.5e-11 71.6 50 70.0
Gohir.D03G112233 Gossypium hirsutum HOM05D004514 ORTHO05D005147 3.2e-11 71.2 49 65.3
DCAR_016379 Daucus carota HOM05D004514 ORTHO05D005147 4.2e-11 70.9 49 69.4
Gorai.003G118500 Gossypium raimondii HOM05D004514 ORTHO05D005147 5.5e-11 70.5 49 65.3
PGR119G0827 Punica granatum HOM05D004514 ORTHO05D005147 1.2e-10 69.3 50 66.0
Gohir.A03G054600 Gossypium hirsutum HOM05D004514 ORTHO05D005147 2.1e-10 68.6 49 63.3
SHI10691 Sapria himalayana HOM05D004514 ORTHO05D005147 1.5e-08 62.4 50 58.0
HPP92_009725 Vanilla planifolia HOM05D004514 ORTHO05D005147 3.7e-07 57.8 50 62.0
BcaC07g38171 Brassica carinata HOM05D001675 ORTHO05D005147 4.8e-07 57.4 38 65.8
BolC8t48592H Brassica oleracea HOM05D004514 ORTHO05D005147 4.8e-07 57.4 38 65.8
AagrBONN_evm.TU.Sc2ySwM_117.2260 Anthoceros agrestis HOM05D004514 ORTHO05D005147 2.4e-06 55.1 68 44.1


User provided reference genes

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