Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05000 Nelumbo nucifera HOM05D000029 ORTHO05D273855 9.8e-26 119.4 62 100.0
Nn5g29128 Nelumbo nucifera HOM05D000029 ORTHO05D000854 4.0e-11 70.9 54 72.2
TAR625G0020 Trochodendron aralioides HOM05D000029 ORTHO05D000854 1.3e-09 65.9 55 70.9
Thecc.01G081000 Theobroma cacao HOM05D000029 ORTHO05D000854 2.2e-09 65.1 44 75.0
arahy.Tifrunner.gnm1.ann1.D6BAN0 Arachis hypogaea HOM05D000029 ORTHO05D000854 2.9e-09 64.7 52 69.2
arahy.Tifrunner.gnm1.ann1.MX0K57 Arachis hypogaea HOM05D000029 ORTHO05D000854 2.9e-09 64.7 52 69.2
Gohir.A02G147600 Gossypium hirsutum HOM05D000029 ORTHO05D000854 3.7e-09 64.3 44 75.0
Gohir.D03G032800 Gossypium hirsutum HOM05D000029 ORTHO05D000854 3.7e-09 64.3 44 75.0
Gorai.003G034400 Gossypium raimondii HOM05D000029 ORTHO05D000854 3.7e-09 64.3 44 75.0
Manes.13G105900 Manihot esculenta HOM05D000029 ORTHO05D000854 3.7e-09 64.3 44 70.5
Duzib187G1096 Durio zibethinus HOM05D000029 ORTHO05D000854 4.9e-09 63.9 44 72.7
QL06p037979 Quercus lobata HOM05D000029 ORTHO05D000854 4.9e-09 63.9 44 72.7
Ca_24657_v3 Cicer arietinum L. HOM05D000029 ORTHO05D000854 8.3e-09 63.2 50 72.0
Cc07_g07650 Coffea canephora HOM05D000029 ORTHO05D000854 8.3e-09 63.2 43 74.4
Duzib264G0414 Durio zibethinus HOM05D000029 ORTHO05D000854 1.4e-08 62.4 44 72.7
Lalb_Chr05g0220481 Lupinus albus HOM05D000029 ORTHO05D000854 1.4e-08 62.4 43 74.4
Nitab4.5_0000093g0070 Nicotiana tabacum HOM05D000029 ORTHO05D000854 1.4e-08 62.4 44 72.7
Actinidia16402 Actinidia chinensis HOM05D000029 ORTHO05D000854 1.9e-08 62.0 42 76.2
CAN.G1061.9 Capsicum annuum HOM05D000029 ORTHO05D000854 1.9e-08 62.0 44 70.5
CiPaw.07G040600 Carya illinoinensis HOM05D000029 ORTHO05D000854 1.9e-08 62.0 43 74.4
DCAR_025839 Daucus carota HOM05D000029 ORTHO05D000854 1.9e-08 62.0 44 70.5
Duzib147G0869 Durio zibethinus HOM05D000029 ORTHO05D000854 1.9e-08 62.0 44 70.5
Lj3g0020738 Lotus japonicus HOM05D000029 ORTHO05D000854 1.9e-08 62.0 53 71.7
Nitab4.5_0000465g0120 Nicotiana tabacum HOM05D000029 ORTHO05D000854 1.9e-08 62.0 49 71.4
TPR.G26012 Trifolium pratense HOM05D000029 ORTHO05D000854 1.9e-08 62.0 52 71.2
CSS0022625 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D000854 2.4e-08 61.6 44 68.2
CSS0041945 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D000854 2.4e-08 61.6 49 65.3
CiPaw.08G147700 Carya illinoinensis HOM05D000029 ORTHO05D000854 2.4e-08 61.6 52 65.4
Glyma.17G156300 Glycine max HOM05D000029 ORTHO05D000854 2.4e-08 61.6 52 69.2
Lj2C426T0 Lonicera japonica HOM05D000029 ORTHO05D000854 2.4e-08 61.6 42 76.2
Peaxi162Scf00096g01311 Petunia axillaris HOM05D000029 ORTHO05D000854 2.4e-08 61.6 45 68.9
MSTRG.23641 Avicennia marina HOM05D000029 ORTHO05D000854 3.2e-08 61.2 49 63.3
COL.COLO4_11655 Corchorus olitorius HOM05D000029 ORTHO05D000854 3.2e-08 61.2 44 72.7
Eucgr.H02383 Eucalyptus grandis HOM05D000029 ORTHO05D000854 3.2e-08 61.2 50 64.0
Glyma.11G043800 Glycine max HOM05D000029 ORTHO05D000854 3.2e-08 61.2 52 69.2
Medtr5g014700 Medicago truncatula HOM05D000029 ORTHO05D000854 3.2e-08 61.2 52 71.2
TWI74G0297 Tripterygium wilfordii HOM05D000029 ORTHO05D000854 3.2e-08 61.2 44 72.7
Lalb_Chr09g0329401 Lupinus albus HOM05D000029 ORTHO05D000854 4.1e-08 60.8 44 72.7
GSVIVG01004465001 Vitis vinifera HOM05D000029 ORTHO05D000854 4.1e-08 60.8 44 70.5
Lalb_Chr16g0385921 Lupinus albus HOM05D000029 ORTHO05D000854 5.4e-08 60.5 44 72.7
Psat2g172880 Pisum sativum HOM05D000029 ORTHO05D000854 5.4e-08 60.5 52 71.2
Gohir.A12G081700 Gossypium hirsutum HOM05D000029 ORTHO05D000854 7.1e-08 60.1 44 70.5
Manes.12G119600 Manihot esculenta HOM05D000029 ORTHO05D000854 7.1e-08 60.1 44 70.5
VMungo0251G3020 Vigna mungo HOM05D000029 ORTHO05D000854 7.1e-08 60.1 49 65.3
arahy.Tifrunner.gnm1.ann1.MGYB2D Arachis hypogaea HOM05D000029 ORTHO05D000854 9.2e-08 59.7 52 65.4
arahy.Tifrunner.gnm1.ann1.PX2G61 Arachis hypogaea HOM05D000029 ORTHO05D000854 9.2e-08 59.7 52 65.4
Glyma.01G197800 Glycine max HOM05D000029 ORTHO05D000854 9.2e-08 59.7 52 67.3
Lalb_Chr09g0323811 Lupinus albus HOM05D000029 ORTHO05D000854 9.2e-08 59.7 52 67.3
Gohir.D12G078600 Gossypium hirsutum HOM05D000029 ORTHO05D000854 1.2e-07 59.3 44 70.5
Phvul.003G231350 Phaseolus vulgaris HOM05D000029 ORTHO05D000854 1.2e-07 59.3 52 67.3
Solyc03g043770.4 Solanum lycopersicum HOM05D000029 ORTHO05D000854 1.2e-07 59.3 44 70.5
Sopen03g007630 Solanum pennellii HOM05D000029 ORTHO05D000854 1.2e-07 59.3 44 70.5
CANSAT01G3133 Cannabis sativa HOM05D000029 ORTHO05D000854 1.6e-07 58.9 43 72.1
Nitab4.5_0004219g0010 Nicotiana tabacum HOM05D000029 ORTHO05D000854 1.6e-07 58.9 44 70.5
Phvul.003G231400 Phaseolus vulgaris HOM05D000029 ORTHO05D000854 1.6e-07 58.9 44 70.5
Solyc02g091840.3 Solanum lycopersicum HOM05D000029 ORTHO05D000854 1.6e-07 58.9 44 68.2
Sopen02g036420 Solanum pennellii HOM05D000029 ORTHO05D000854 1.6e-07 58.9 44 68.2
Ca_22083_v3 Cicer arietinum L. HOM05D000029 ORTHO05D000854 2.1e-07 58.5 55 58.2
Potri.007G009200 Populus trichocarpa HOM05D000029 ORTHO05D000854 2.1e-07 58.5 44 70.5
Cpa.g.sc129.40 Carica papaya HOM05D000029 ORTHO05D000854 2.7e-07 58.2 45 66.7
Ciclev10024796m.g Citrus clementina HOM05D000029 ORTHO05D000854 3.5e-07 57.8 44 65.9
Haze_03953 Corylus avellana HOM05D000029 ORTHO05D000854 3.5e-07 57.8 43 69.8
Phvul.002G007600 Phaseolus vulgaris HOM05D000029 ORTHO05D000854 3.5e-07 57.8 49 65.3
Gorai.007G228700 Gossypium raimondii HOM05D000029 ORTHO05D000854 4.6e-07 57.4 46 69.6
Lj4C171T2 Lonicera japonica HOM05D000029 ORTHO05D000854 4.6e-07 57.4 44 68.2
Medtr4g097880 Medicago truncatula HOM05D000029 ORTHO05D000854 4.6e-07 57.4 55 60.0
Sed0002656 Sechium edule HOM05D000029 ORTHO05D000854 4.6e-07 57.4 44 65.9
Gorai.008G087500 Gossypium raimondii HOM05D000029 ORTHO05D000854 6.0e-07 57.0 44 68.2
Oeu030845.1 Olea europaea HOM05D000029 ORTHO05D000854 6.0e-07 57.0 42 71.4
Oeu059804.1 Olea europaea HOM05D000029 ORTHO05D000854 6.0e-07 57.0 39 64.1
RcHm_v2.0_Chr2g0109581 Rosa chinensis HOM05D000029 ORTHO05D000854 6.0e-07 57.0 49 63.3
Sabra07G0007000 Salix brachista HOM05D000029 ORTHO05D013250 6.0e-07 57.0 42 71.4
Sed0008577 Sechium edule HOM05D000029 ORTHO05D000854 6.0e-07 57.0 44 65.9
Dinv26985 Davidia involucrata HOM05D000029 ORTHO05D000854 7.8e-07 56.6 57 56.1
Glyma.05G110400 Glycine max HOM05D000029 ORTHO05D000854 7.8e-07 56.6 39 74.4
Hund16605 Selenicereus undatus HOM05D000029 ORTHO05D000854 7.8e-07 56.6 42 61.9
Aqoxy6G00603 Aquilegia oxysepala HOM05D000029 ORTHO05D000854 1.0e-06 56.2 45 68.9
MELO3C032975.2 Cucumis melo HOM05D000029 ORTHO05D000854 1.0e-06 56.2 45 66.7
CsaV3_6G044540 Cucumis sativus L. HOM05D000029 ORTHO05D000854 1.0e-06 56.2 45 66.7
Gohir.A11G210400 Gossypium hirsutum HOM05D000029 ORTHO05D000854 1.0e-06 56.2 54 61.1
HanXRQChr12g0377181 Helianthus annuus HOM05D000029 ORTHO05D000854 1.0e-06 56.2 41 68.3
Oeu061522.1 Olea europaea HOM05D000029 ORTHO05D000854 1.3e-06 55.8 42 69.0
PGSC0003DMG400016685 Solanum tuberosum HOM05D000029 ORTHO05D000854 1.3e-06 55.8 44 68.2
PGSC0003DMG400030625 Solanum tuberosum HOM05D000029 ORTHO05D000854 1.3e-06 55.8 44 65.9
Gohir.D11G212800 Gossypium hirsutum HOM05D000029 ORTHO05D000854 1.7e-06 55.5 46 67.4
Nn1g05942 Nelumbo nucifera HOM05D000029 ORTHO05D000854 1.7e-06 55.5 55 63.6
Psat4g079880 Pisum sativum HOM05D000029 ORTHO05D000854 1.7e-06 55.5 56 60.7
TPR.G22419 Trifolium pratense HOM05D000029 ORTHO05D000854 1.7e-06 55.5 56 60.7
TWI53G0212 Tripterygium wilfordii HOM05D000029 ORTHO05D000854 2.3e-06 55.1 43 74.4
TWI77G0318 Tripterygium wilfordii HOM05D000029 ORTHO05D000854 2.3e-06 55.1 44 68.2
ClCG01G018020 Citrullus lanatus HOM05D000029 ORTHO05D000854 3.0e-06 54.7 45 66.7
SGA_v2.0_scaffold269G46236 Striga asiatica HOM05D000029 ORTHO05D000854 3.0e-06 54.7 41 68.3
EL10Ac6g13289 Beta vulgaris HOM05D000029 ORTHO05D000854 3.9e-06 54.3 45 64.4
Cfa006806 Carpinus fangiana HOM05D000029 ORTHO05D000854 3.9e-06 54.3 55 65.5
AUR62005872 Chenopodium quinoa HOM05D000029 ORTHO05D000854 3.9e-06 54.3 44 63.6
MBI16_g35810_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D000854 3.9e-06 54.3 44 63.6
Prupe.6G212200 Prunus persica HOM05D000029 ORTHO05D000854 3.9e-06 54.3 49 61.2
Gohir.A02G147500 Gossypium hirsutum HOM05D000029 ORTHO05D000854 5.1e-06 53.9 38 73.7
Gohir.D03G032900 Gossypium hirsutum HOM05D000029 ORTHO05D000854 5.1e-06 53.9 38 73.7
Gorai.003G034500 Gossypium raimondii HOM05D000029 ORTHO05D000854 5.1e-06 53.9 38 73.7
VMungo1215G2740 Vigna mungo HOM05D000029 ORTHO05D000854 5.1e-06 53.9 63 52.4
AUR62032864 Chenopodium quinoa HOM05D000029 ORTHO05D000854 6.6e-06 53.5 44 61.4
Eucgr.I00635 Eucalyptus grandis HOM05D000029 ORTHO05D000854 6.6e-06 53.5 59 52.5
FvH4_1g18710 Fragaria vesca HOM05D000029 ORTHO05D000854 6.6e-06 53.5 49 61.2
FAN19G1243 Fragaria x ananassa HOM05D000029 ORTHO05D000854 6.6e-06 53.5 49 61.2
FAN23G0319 Fragaria x ananassa HOM05D000029 ORTHO05D000854 6.6e-06 53.5 49 61.2
FAN23G1367 Fragaria x ananassa HOM05D000029 ORTHO05D000854 6.6e-06 53.5 49 61.2
FAN23G3125 Fragaria x ananassa HOM05D000029 ORTHO05D000854 6.6e-06 53.5 49 61.2
FAN26G1630 Fragaria x ananassa HOM05D000029 ORTHO05D000854 6.6e-06 53.5 49 61.2
FAN28G0029 Fragaria x ananassa HOM05D000029 ORTHO05D000854 6.6e-06 53.5 49 61.2
Lj2g0026243 Lotus japonicus HOM05D000029 ORTHO05D000854 8.6e-06 53.1 42 71.4
Nitab4.5_0000396g0120 Nicotiana tabacum HOM05D000029 ORTHO05D000854 8.6e-06 53.1 33 75.8


User provided reference genes

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