Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04858 Nelumbo nucifera HOM05D004883 ORTHO05D005766 9.0e-63 243.4 124 100.0
TAR381G1103 Trochodendron aralioides HOM05D004883 ORTHO05D005766 1.1e-55 219.9 125 88.0
GSVIVG01009495001 Vitis vinifera HOM05D004883 ORTHO05D005766 1.5e-54 216.1 125 87.2
ATR1102G009 Amborella trichopoda HOM05D004883 ORTHO05D005766 7.6e-54 213.8 120 85.8
Dinv35960 Davidia involucrata HOM05D004883 ORTHO05D005766 1.0e-53 213.4 125 84.8
PSO210G0389 Papaver somniferum HOM05D004883 ORTHO05D005766 2.2e-53 212.2 120 85.8
PSO170G5588 Papaver somniferum HOM05D004883 ORTHO05D005766 6.5e-53 210.7 120 85.0
Cpa.g.sc49.21 Carica papaya HOM05D004883 ORTHO05D005766 8.4e-53 210.3 119 89.1
Aqoxy5G01236 Aquilegia oxysepala HOM05D004883 ORTHO05D005766 2.5e-52 208.8 124 83.1
Rhsim07G0228400 Rhododendron simsii HOM05D004883 ORTHO05D005766 2.5e-52 208.8 125 84.0
vmacro04449 Vaccinium macrocarpon HOM05D004883 ORTHO05D005766 4.2e-52 208.0 125 83.2
Os06g0211300 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 5.5e-52 207.6 120 82.5
CDE08G1634 Ceratophyllum demersum HOM05D004883 ORTHO05D005766 7.2e-52 207.2 118 84.7
ECA232G2590 Erigeron canadensis HOM05D004883 ORTHO05D005766 7.2e-52 207.2 125 84.0
Hma1.2p1_0982F.1_g244010 Hydrangea macrophylla HOM05D004883 ORTHO05D005766 7.2e-52 207.2 125 81.6
MSTRG.1348 Avicennia marina HOM05D004883 ORTHO05D005766 9.3e-52 206.8 125 83.2
PGR031G0707 Punica granatum HOM05D004883 ORTHO05D005766 1.2e-51 206.5 125 83.2
Lsat_1_v5_gn_4_125820 Lactuca sativa HOM05D004883 ORTHO05D005766 4.6e-51 204.5 121 85.1
Gohir.D01G108200 Gossypium hirsutum HOM05D004883 ORTHO05D005766 7.9e-51 203.8 118 86.4
Atru.chr13.693 Acer truncatum HOM05D004883 ORTHO05D005766 1.0e-50 203.4 125 80.8
Haze_17525 Corylus avellana HOM05D004883 ORTHO05D005766 1.0e-50 203.4 123 85.4
QL02p004805 Quercus lobata HOM05D004883 ORTHO05D005766 1.3e-50 203.0 124 83.1
CSS0025959 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 1.8e-50 202.6 125 80.0
CSS0031938 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 1.8e-50 202.6 125 80.0
Glyma.14G082800 Glycine max HOM05D004883 ORTHO05D005766 3.0e-50 201.8 123 81.3
Gorai.002G132400 Gossypium raimondii HOM05D004883 ORTHO05D005766 3.0e-50 201.8 119 85.7
Gorai.009G211700 Gossypium raimondii HOM05D004883 ORTHO05D005766 3.0e-50 201.8 119 86.6
HanXRQChr14g0439621 Helianthus annuus HOM05D004883 ORTHO05D005766 3.0e-50 201.8 119 83.2
Actinidia38058 Actinidia chinensis HOM05D004883 ORTHO05D005766 5.1e-50 201.1 125 80.8
HanXRQChr05g0150871 Helianthus annuus HOM05D004883 ORTHO05D005766 6.7e-50 200.7 121 81.8
CiPaw.16G043800 Carya illinoinensis HOM05D004883 ORTHO05D005766 8.7e-50 200.3 123 83.7
Gohir.D05G205400 Gossypium hirsutum HOM05D004883 ORTHO05D005766 8.7e-50 200.3 119 85.7
DCAR_012777 Daucus carota HOM05D004883 ORTHO05D005766 1.5e-49 199.5 121 81.0
Aa31LG9G12950 Aethionema arabicum HOM05D004883 ORTHO05D005766 1.9e-49 199.1 118 83.1
Prupe.1G435500 Prunus persica HOM05D004883 ORTHO05D005766 1.9e-49 199.1 125 80.8
arahy.Tifrunner.gnm1.ann1.09A9GY Arachis hypogaea HOM05D004883 ORTHO05D005766 2.5e-49 198.7 124 80.6
arahy.Tifrunner.gnm1.ann1.B0E7W8 Arachis hypogaea HOM05D004883 ORTHO05D005766 2.5e-49 198.7 124 80.6
Lsat_1_v5_gn_6_112040 Lactuca sativa HOM05D004883 ORTHO05D005766 2.5e-49 198.7 120 81.7
Thecc.08G007300 Theobroma cacao HOM05D004883 ORTHO05D005766 2.5e-49 198.7 119 83.2
Duzib093G0126 Durio zibethinus HOM05D004883 ORTHO05D005766 3.3e-49 198.4 110 90.0
MD15G1083000 Malus domestica HOM05D004883 ORTHO05D005766 3.3e-49 198.4 125 82.4
COL.COLO4_26509 Corchorus olitorius HOM05D004883 ORTHO05D005766 4.3e-49 198.0 121 84.3
Phvul.001G022000 Phaseolus vulgaris HOM05D004883 ORTHO05D005766 4.3e-49 198.0 125 79.2
Migut.N02708 Erythranthe guttata HOM05D004883 ORTHO05D005766 5.7e-49 197.6 125 78.4
AUR62012534 Chenopodium quinoa HOM05D004883 ORTHO05D005766 7.4e-49 197.2 123 80.5
Ciclev10002854m.g Citrus clementina HOM05D004883 ORTHO05D005766 7.4e-49 197.2 125 80.0
Oeu057282.1 Olea europaea HOM05D004883 ORTHO05D005766 7.4e-49 197.2 125 77.6
Cc10_g04160 Coffea canephora HOM05D004883 ORTHO05D005766 9.7e-49 196.8 119 81.5
Gohir.A01G119900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 9.7e-49 196.8 119 83.2
Psat1g147680 Pisum sativum HOM05D004883 ORTHO05D005766 9.7e-49 196.8 125 77.6
Sc02g0007090 Simmondsia chinensis HOM05D004883 ORTHO05D005766 9.7e-49 196.8 125 79.2
Glyma.17G242300 Glycine max HOM05D004883 ORTHO05D005766 1.3e-48 196.4 123 80.5
Thhalv10003291m.g Eutrema salsugineum HOM05D004883 ORTHO05D005766 1.6e-48 196.1 119 83.2
TPR.G3781 Trifolium pratense HOM05D004883 ORTHO05D005766 1.6e-48 196.1 123 80.5
AUR62014661 Chenopodium quinoa HOM05D004883 ORTHO05D005766 2.2e-48 195.7 123 79.7
AUR62044174 Chenopodium quinoa HOM05D004883 ORTHO05D005766 2.2e-48 195.7 123 79.7
Lj5g0012185 Lotus japonicus HOM05D004883 ORTHO05D005766 2.2e-48 195.7 121 81.8
Sopen04g032520 Solanum pennellii HOM05D004883 ORTHO05D005766 2.2e-48 195.7 126 77.8
VMungo0647G0758 Vigna mungo HOM05D004883 ORTHO05D005766 2.8e-48 195.3 125 78.4
Ah.09g236860 Amaranthus hybridus HOM05D004883 ORTHO05D005766 3.7e-48 194.9 123 78.9
BcaB07g31037 Brassica carinata HOM05D004883 ORTHO05D005766 3.7e-48 194.9 119 82.4
Carub.0008s0602 Capsella rubella HOM05D004883 ORTHO05D005766 3.7e-48 194.9 119 82.4
Ca_13291_v3 Cicer arietinum L. HOM05D004883 ORTHO05D005766 4.8e-48 194.5 125 76.0
Eucgr.F02346 Eucalyptus grandis HOM05D004883 ORTHO05D005766 4.8e-48 194.5 155 68.4
AL8G18060 Arabidopsis lyrata HOM05D004883 ORTHO05D005766 6.3e-48 194.1 119 82.4
EL10Ac8g19960 Beta vulgaris HOM05D004883 ORTHO05D005766 6.3e-48 194.1 123 78.9
BcaC04g21964 Brassica carinata HOM05D004883 ORTHO05D005766 6.3e-48 194.1 119 82.4
A09p20040 Brassica napus HOM05D004883 ORTHO05D005766 6.3e-48 194.1 119 82.4
C09p25420 Brassica napus HOM05D004883 ORTHO05D005766 6.3e-48 194.1 119 82.4
BolC9t55441H Brassica oleracea HOM05D004883 ORTHO05D005766 6.3e-48 194.1 119 82.4
BraA09t37617Z Brassica rapa HOM05D004883 ORTHO05D005766 6.3e-48 194.1 119 82.4
DCAR_020929 Daucus carota HOM05D004883 ORTHO05D005766 6.3e-48 194.1 121 76.9
Gohir.D06G016900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 6.3e-48 194.1 119 80.7
Gorai.010G019800 Gossypium raimondii HOM05D004883 ORTHO05D005766 6.3e-48 194.1 119 80.7
Peaxi162Scf00010g00308 Petunia axillaris HOM05D004883 ORTHO05D005766 6.3e-48 194.1 121 80.2
SalBow7G2082 Salvia bowleyana HOM05D004883 ORTHO05D005766 6.3e-48 194.1 119 80.7
Sp2g07620 Schrenkiella parvula HOM05D004883 ORTHO05D005766 6.3e-48 194.1 119 82.4
Sed0005554 Sechium edule HOM05D004883 ORTHO05D005766 6.3e-48 194.1 121 78.5
Solyc04g078920.3 Solanum lycopersicum HOM05D004883 ORTHO05D005766 6.3e-48 194.1 126 77.8
PGSC0003DMG400007973 Solanum tuberosum HOM05D004883 ORTHO05D005766 6.3e-48 194.1 126 77.0
Lalb_Chr22g0355131 Lupinus albus HOM05D004883 ORTHO05D005766 8.2e-48 193.7 125 76.8
THA.LOC104822849 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 8.2e-48 193.7 121 81.8
Migut.C00579 Erythranthe guttata HOM05D004883 ORTHO05D005766 1.1e-47 193.4 125 76.8
BcaC06g31741 Brassica carinata HOM05D004883 ORTHO05D005766 1.4e-47 193.0 119 81.5
ECA246G2602 Erigeron canadensis HOM05D004883 ORTHO05D005766 1.4e-47 193.0 125 76.8
MD08G1101600 Malus domestica HOM05D004883 ORTHO05D005766 1.4e-47 193.0 125 80.0
Oeu044836.1 Olea europaea HOM05D004883 ORTHO05D005766 1.4e-47 193.0 125 76.0
AT5G42890 Arabidopsis thaliana HOM05D004883 ORTHO05D005766 1.8e-47 192.6 119 81.5
Gohir.A05G202300 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.8e-47 192.6 109 89.0
Hund21302 Selenicereus undatus HOM05D004883 ORTHO05D005766 2.4e-47 192.2 122 77.0
SalBow3G1199 Salvia bowleyana HOM05D004883 ORTHO05D005766 3.1e-47 191.8 119 80.7
THA.LOC104814168 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 4.1e-47 191.4 121 81.0
SEGI_37934 Sequoiadendron giganteum HOM05D004883 ORTHO05D005766 5.3e-47 191.0 120 74.2
Medtr1g019430 Medicago truncatula HOM05D004883 ORTHO05D005766 9.0e-47 190.3 123 78.0
ClCG05G019880 Citrullus lanatus HOM05D004883 ORTHO05D005766 1.2e-46 189.9 124 75.0
CARHR181250 Cardamine hirsuta HOM05D004883 ORTHO05D005766 2.6e-46 188.7 119 80.7
FvH4_2g34441 Fragaria vesca HOM05D004883 ORTHO05D005766 2.6e-46 188.7 125 76.8
FAN20G2534 Fragaria x ananassa HOM05D004883 ORTHO05D005766 3.4e-46 188.3 125 76.8
CsaV3_4G034310 Cucumis sativus L. HOM05D004883 ORTHO05D005766 5.9e-46 187.6 124 72.6
MBI06_g02552_MAGBIO Magnolia biondii HOM05D004883 ORTHO05D005766 1.0e-45 186.8 123 78.9
Os02g0765800 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 1.0e-45 186.8 120 71.7
FAN27G2225 Fragaria x ananassa HOM05D004883 ORTHO05D005766 1.3e-45 186.4 124 75.8
RcHm_v2.0_Chr6g0307931 Rosa chinensis HOM05D004883 ORTHO05D005766 9.4e-44 180.3 125 74.4
TWI36G0538 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 9.4e-44 180.3 124 75.0
MELO3C016751.2 Cucumis melo HOM05D004883 ORTHO05D005766 1.6e-43 179.5 130 69.2
Pp3c24_4700 Physcomitrium patens HOM05D004883 ORTHO05D005766 1.4e-42 176.4 120 71.7
SMO169G0122 Selaginella moellendorffii HOM05D004883 ORTHO05D005766 2.3e-42 175.6 124 68.5
Duzib041G0234 Durio zibethinus HOM05D004883 ORTHO05D005766 6.7e-42 174.1 119 76.5
TWI56G0859 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 6.7e-42 174.1 124 71.0
Mapoly0033s0053 Marchantia polymorpha HOM05D004883 ORTHO05D005766 1.5e-41 172.9 120 69.2
TWI56G0476 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 1.5e-41 172.9 124 71.0
CSS0006435 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 2.0e-41 172.6 124 71.8
FvH4_2g34440 Fragaria vesca HOM05D004883 ORTHO05D005766 2.5e-41 172.2 125 71.2
Manes.05G174000 Manihot esculenta HOM05D004883 ORTHO05D005766 2.5e-41 172.2 119 71.4
Hund23571 Selenicereus undatus HOM05D004883 ORTHO05D005766 1.7e-40 169.5 123 68.3
Nitab4.5_0003118g0020 Nicotiana tabacum HOM05D004883 ORTHO05D005766 1.8e-39 166.0 125 72.8
Potri.002G126200 Populus trichocarpa HOM05D004883 ORTHO05D005766 1.8e-39 166.0 119 68.1
Nitab4.5_0000287g0320 Nicotiana tabacum HOM05D004883 ORTHO05D005766 2.4e-39 165.6 125 72.8
Sabra02G0098900 Salix brachista HOM05D004883 ORTHO05D005766 2.4e-39 165.6 119 69.7
C03p39670 Brassica napus HOM05D004883 ORTHO05D005766 4.1e-39 164.9 107 78.5
HPP92_013338 Vanilla planifolia HOM05D004883 ORTHO05D005766 2.0e-38 162.5 121 70.2
Potri.014G029300 Populus trichocarpa HOM05D004883 ORTHO05D005766 1.4e-36 156.4 119 66.4
TAR625G0321 Trochodendron aralioides HOM05D004883 ORTHO05D005766 4.2e-36 154.8 97 81.4
Sabra14G0020100 Salix brachista HOM05D004883 ORTHO05D005766 5.5e-36 154.5 119 65.5
MD00G1215600 Malus domestica HOM05D004883 ORTHO05D005766 2.7e-35 152.1 105 75.2
BcaC09g50201 Brassica carinata HOM05D004883 ORTHO05D005766 2.3e-34 149.1 110 70.0
Manes.18G037300 Manihot esculenta HOM05D004883 ORTHO05D005766 1.5e-33 146.4 119 61.3
CANSAT35G0766 Cannabis sativa HOM05D004883 ORTHO05D005766 1.7e-32 142.9 121 57.0
Nn5g30317 Nelumbo nucifera HOM05D004883 ORTHO05D005766 1.8e-31 139.4 124 63.7
Peaxi162Scf00252g00711 Petunia axillaris HOM05D004883 ORTHO05D005766 3.8e-29 131.7 125 58.4
FAN15G1199 Fragaria x ananassa HOM05D004883 ORTHO05D005766 3.2e-28 128.6 83 75.9
BcaC01g04518 Brassica carinata HOM05D004883 ORTHO05D005766 4.0e-26 121.7 81 79.0
AagrBONN_evm.TU.Sc2ySwM_344.1976 Anthoceros agrestis HOM05D004883 ORTHO05D005766 8.8e-26 120.6 119 53.8
Os01g0357200 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 8.8e-26 120.6 84 69.0
CAN.G371.3 Capsicum annuum HOM05D004883 ORTHO05D005766 2.6e-25 119.0 123 55.3
EL10Ac4g09184 Beta vulgaris HOM05D004883 ORTHO05D005766 7.5e-25 117.5 117 57.3
BolC9t59992H Brassica oleracea HOM05D004883 ORTHO05D005766 7.5e-25 117.5 99 66.7
CAN.G1139.16 Capsicum annuum HOM05D004883 ORTHO05D005766 2.8e-24 115.5 91 62.6
EL10Ac7g17187 Beta vulgaris HOM05D004883 ORTHO05D005766 1.4e-23 113.2 83 71.1
Actinidia29871 Actinidia chinensis HOM05D004883 ORTHO05D005766 1.8e-23 112.8 62 91.9
Lj4A58G20 Lonicera japonica HOM05D000983 ORTHO05D005766 1.3e-21 106.7 60 86.7
Gohir.A06G018633 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.9e-20 102.8 92 59.8
BolC1t02723H Brassica oleracea HOM05D004883 ORTHO05D005766 5.5e-20 101.3 67 76.1
RcHm_v2.0_Chr5g0032801 Rosa chinensis HOM05D004883 ORTHO05D005766 9.8e-17 90.5 78 61.5
C01p27920 Brassica napus HOM05D004883 ORTHO05D005766 4.5e-14 81.6 102 52.0
unitig_32.g11126 Utricularia gibba HOM05D004883 ORTHO05D005766 5.9e-14 81.3 63 58.7
C09p72490 Brassica napus HOM05D004883 ORTHO05D005766 1.2e-09 67.0 43 74.4
PRCOL_00003255 Prasinoderma coloniale HOM05D004883 ORTHO05D005766 7.5e-09 64.3 87 41.4
CBR_g37451 Chara braunii HOM05D004883 ORTHO05D005766 7.0e-07 57.8 53 58.5
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 9.2e-07 57.4 89 40.4
MELO3C033382.2 Cucumis melo HOM05D004883 ORTHO05D005766 9.2e-07 57.4 39 69.2


User provided reference genes

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