Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 3.2e-125 451.8 238 100.0
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.1e-92 342.8 340 62.4
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 1.4e-48 197.2 129 79.1
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 4.1e-48 195.7 127 78.7
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 4.1e-48 195.7 127 77.2
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 4.1e-48 195.7 148 70.9
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 7.8e-47 191.4 125 77.6
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 1.0e-46 191.0 124 77.4
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 1.3e-46 190.7 127 74.0
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 1.7e-46 190.3 126 77.0
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 1.7e-46 190.3 127 74.0
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 2.3e-46 189.9 127 75.6
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 3.0e-46 189.5 127 74.0
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 3.0e-46 189.5 125 75.2
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 5.1e-46 188.7 124 74.2
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 8.6e-46 188.0 146 66.4
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 8.6e-46 188.0 149 65.8
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 1.1e-45 187.6 127 76.4
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 1.1e-45 187.6 127 76.4
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 1.1e-45 187.6 127 74.8
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 1.5e-45 187.2 127 73.2
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 1.5e-45 187.2 127 74.8
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 1.5e-45 187.2 118 79.7
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 1.5e-45 187.2 122 77.0
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 2.5e-45 186.4 127 71.7
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 3.3e-45 186.0 126 72.2
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 3.3e-45 186.0 169 62.1
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 4.3e-45 185.7 126 75.4
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 5.6e-45 185.3 125 73.6
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 7.3e-45 184.9 128 71.9
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 1.2e-44 184.1 183 57.4
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 1.6e-44 183.7 126 75.4
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 1.6e-44 183.7 125 72.8
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 2.1e-44 183.3 112 82.1
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 2.1e-44 183.3 125 71.2
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 2.1e-44 183.3 127 74.0
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 2.8e-44 183.0 125 73.6
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 3.6e-44 182.6 118 76.3
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 3.6e-44 182.6 125 72.8
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 4.7e-44 182.2 146 66.4
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 6.2e-44 181.8 127 71.7
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 6.2e-44 181.8 124 75.0
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 1.1e-43 181.0 148 65.5
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 1.4e-43 180.6 113 77.9
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 1.4e-43 180.6 124 73.4
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 1.8e-43 180.3 127 72.4
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 1.8e-43 180.3 121 73.6
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 1.8e-43 180.3 323 40.9
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 2.3e-43 179.9 118 75.4
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.3e-43 179.9 118 75.4
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 2.3e-43 179.9 128 71.1
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.1e-43 179.5 118 75.4
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 3.1e-43 179.5 122 73.0
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 4.0e-43 179.1 127 70.9
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 4.0e-43 179.1 127 72.4
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 4.0e-43 179.1 125 72.0
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 5.2e-43 178.7 122 72.1
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 5.2e-43 178.7 146 67.1
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 8.9e-43 177.9 124 71.0
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 8.9e-43 177.9 128 71.1
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 8.9e-43 177.9 146 67.1
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 1.5e-42 177.2 126 69.8
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 1.5e-42 177.2 125 70.4
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 1.5e-42 177.2 126 70.6
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 2.6e-42 176.4 126 71.4
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 2.6e-42 176.4 126 69.0
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 4.4e-42 175.6 127 70.9
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 4.4e-42 175.6 162 59.9
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 5.8e-42 175.3 123 71.5
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 5.8e-42 175.3 125 71.2
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 7.5e-42 174.9 147 64.6
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 7.5e-42 174.9 126 69.8
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 7.5e-42 174.9 113 77.9
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 7.5e-42 174.9 118 74.6
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 9.9e-42 174.5 162 59.3
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 9.9e-42 174.5 119 71.4
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 1.3e-41 174.1 125 70.4
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 1.7e-41 173.7 118 73.7
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 3.7e-41 172.6 138 68.1
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 1.9e-40 170.2 278 40.6
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 4.1e-40 169.1 117 69.2
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 3.5e-39 166.0 157 60.5
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 4.6e-39 165.6 113 70.8
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 6.0e-39 165.2 172 55.2
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 6.0e-39 165.2 172 55.2
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 1.7e-38 163.7 150 59.3
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 1.7e-38 163.7 150 59.3
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 1.7e-38 163.7 127 67.7
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 1.7e-38 163.7 181 52.5
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 2.3e-38 163.3 170 55.3
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 2.3e-38 163.3 178 52.8
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 2.3e-38 163.3 178 52.8
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 2.3e-38 163.3 125 67.2
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 5.1e-38 162.2 178 52.8
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 6.2e-36 155.2 152 55.3
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 6.2e-36 155.2 152 55.3
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 1.8e-35 153.7 152 54.6
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 1.2e-34 151.0 151 53.6
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 9.9e-34 147.9 175 49.1
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 8.4e-33 144.8 197 45.7
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 3.2e-32 142.9 123 62.6
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.1e-31 140.2 75 96.0
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 1.2e-28 131.0 100 65.0
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.1e-27 127.9 126 55.6
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 6.9e-27 125.2 128 51.6
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 1.2e-26 124.4 126 50.8
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 3.8e-25 119.4 122 51.6
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 3.0e-22 109.8 68 82.4
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 6.6e-22 108.6 81 67.9
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 1.9e-21 107.1 88 61.4
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 1.4e-19 100.9 69 73.9
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.4e-19 100.1 56 92.9
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 9.0e-19 98.2 85 56.5
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 6.4e-17 92.0 103 52.4
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 5.4e-16 89.0 50 82.0
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 1.8e-14 84.0 69 58.0
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 5.1e-14 82.4 123 41.5
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 4.3e-13 79.3 99 48.5
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.4e-11 74.3 99 44.4
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 3.8e-09 66.2 112 35.7
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 2.5e-08 63.5 68 48.5
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 4.2e-08 62.8 97 43.3
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.7e-07 60.1 100 41.0
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.0e-06 56.6 36 77.8
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 8.7e-06 55.1 49 63.3


User provided reference genes

Program Settings