Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 1.2e-149 533.1 270 100.0
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 1.7e-69 266.9 208 66.3
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 6.7e-63 245.0 181 67.4
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 1.8e-60 236.9 199 60.3
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 5.3e-60 235.3 223 59.6
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 9.1e-60 234.6 181 63.5
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 2.0e-59 233.4 187 63.6
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 2.6e-59 233.0 191 62.3
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 7.7e-59 231.5 182 65.4
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 1.7e-58 230.3 177 66.1
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 1.7e-58 230.3 177 66.1
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 3.8e-58 229.2 183 63.9
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 8.5e-58 228.0 207 59.4
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 1.5e-57 227.3 174 69.0
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 1.5e-57 227.3 182 63.7
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 1.9e-57 226.9 221 53.4
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 2.5e-57 226.5 210 58.6
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 4.2e-57 225.7 174 69.0
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 5.5e-57 225.3 177 64.4
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 7.2e-57 224.9 193 61.1
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 9.4e-57 224.6 177 63.8
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 9.4e-57 224.6 174 64.4
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 1.2e-56 224.2 222 55.4
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.6e-56 223.8 177 63.8
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 1.6e-56 223.8 188 62.2
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 2.7e-56 223.0 206 56.8
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 2.7e-56 223.0 154 71.4
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 4.7e-56 222.2 177 63.8
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 4.7e-56 222.2 175 64.0
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 6.1e-56 221.9 183 61.7
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 8.0e-56 221.5 180 61.1
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 8.0e-56 221.5 162 69.1
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 1.0e-55 221.1 196 60.2
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 1.0e-55 221.1 183 62.3
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.8e-55 220.3 177 62.7
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 1.8e-55 220.3 201 56.7
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 1.8e-55 220.3 178 61.2
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 2.3e-55 219.9 177 63.3
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 3.0e-55 219.5 176 62.5
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 4.0e-55 219.2 180 60.6
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 4.0e-55 219.2 175 63.4
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 5.2e-55 218.8 175 65.7
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 6.8e-55 218.4 177 61.0
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 1.2e-54 217.6 174 64.9
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 1.2e-54 217.6 203 58.1
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.5e-54 217.2 184 62.0
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.5e-54 217.2 184 62.0
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 2.6e-54 216.5 185 59.5
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 3.4e-54 216.1 196 59.7
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 4.4e-54 215.7 164 67.1
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 5.7e-54 215.3 212 54.2
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 5.7e-54 215.3 205 55.1
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 5.7e-54 215.3 175 60.6
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 9.8e-54 214.5 194 57.7
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 1.3e-53 214.2 176 61.9
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 2.2e-53 213.4 174 63.2
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 2.2e-53 213.4 208 56.7
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 2.2e-53 213.4 173 61.8
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 2.2e-53 213.4 154 66.9
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 2.8e-53 213.0 149 70.5
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 2.8e-53 213.0 181 59.7
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 2.8e-53 213.0 169 65.1
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 3.7e-53 212.6 210 55.2
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 4.8e-53 212.2 174 64.4
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 4.8e-53 212.2 174 62.6
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 8.3e-53 211.5 168 66.7
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 8.3e-53 211.5 174 62.6
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 8.3e-53 211.5 183 56.8
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 8.3e-53 211.5 217 52.5
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 1.1e-52 211.1 144 73.6
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 1.1e-52 211.1 179 60.9
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 1.4e-52 210.7 236 51.7
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 2.4e-52 209.9 216 55.1
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 2.4e-52 209.9 168 61.9
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 3.1e-52 209.5 197 58.4
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 4.1e-52 209.1 201 54.7
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 5.4e-52 208.8 224 51.3
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 7.0e-52 208.4 182 60.4
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 9.1e-52 208.0 210 54.3
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 1.2e-51 207.6 176 61.9
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 1.2e-51 207.6 211 56.4
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 1.2e-51 207.6 171 61.4
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 1.6e-51 207.2 144 68.8
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 2.7e-51 206.5 168 60.7
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 4.5e-51 205.7 180 57.8
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 4.5e-51 205.7 176 60.2
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 5.9e-51 205.3 169 60.4
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 5.9e-51 205.3 163 63.8
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 7.7e-51 204.9 168 60.1
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 1.0e-50 204.5 154 63.6
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 1.3e-50 204.1 206 52.4
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 1.3e-50 204.1 206 52.4
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 1.3e-50 204.1 163 65.6
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 1.3e-50 204.1 142 71.8
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 1.7e-50 203.8 192 55.7
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 1.7e-50 203.8 211 55.5
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 2.2e-50 203.4 144 67.4
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 3.8e-50 202.6 168 60.1
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 5.0e-50 202.2 173 61.3
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 6.5e-50 201.8 186 56.5
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 6.5e-50 201.8 212 51.9
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 1.1e-49 201.1 166 62.0
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 1.5e-49 200.7 193 57.0
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 2.5e-49 199.9 238 49.2
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 4.2e-49 199.1 181 54.1
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 5.5e-49 198.7 178 56.7
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 1.6e-48 197.2 181 54.1
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 2.1e-48 196.8 143 67.1
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 2.7e-48 196.4 169 58.6
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 8.0e-48 194.9 193 55.4
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 1.2e-46 191.0 147 65.3
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 2.0e-46 190.3 188 52.7
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 4.4e-46 189.1 199 52.8
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 2.2e-45 186.8 134 68.7
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 2.8e-45 186.4 154 60.4
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 3.7e-45 186.0 179 53.6
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 3.7e-45 186.0 163 58.9
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 1.8e-44 183.7 154 60.4
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 2.4e-44 183.3 229 47.6
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 1.2e-43 181.0 163 58.9
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 2.3e-42 176.8 182 54.4
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 2.9e-42 176.4 178 55.6
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 3.8e-42 176.0 178 52.8
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 2.5e-41 173.3 220 46.8
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 8.0e-40 168.3 177 51.4
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 2.0e-38 163.7 180 52.2
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 2.0e-38 163.7 112 69.6
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 3.4e-38 162.9 180 52.2
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 4.4e-38 162.5 183 48.6
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 5.0e-34 149.1 213 44.1
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 2.5e-33 146.7 165 50.3
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 1.2e-32 144.4 142 50.0
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 6.2e-32 142.1 125 53.6
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 8.0e-32 141.7 152 51.3
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 2.3e-31 140.2 180 44.4
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 3.1e-31 139.8 187 42.2
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 7.5e-30 135.2 132 53.0
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 1.7e-29 134.0 167 43.1
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 3.7e-29 132.9 152 43.4
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 9.2e-28 128.3 147 50.3
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 1.2e-22 111.3 93 60.2
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 9.8e-22 108.2 93 59.1
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 6.2e-16 89.0 101 48.5
PSO339G0898 Papaver somniferum HOM05D004586 ORTHO05D005266 1.2e-14 84.7 83 59.0
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 1.4e-12 77.8 214 27.1
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 7.1e-12 75.5 74 55.4
AL2G23840 Arabidopsis lyrata HOM05D020923 ORTHO05D021440 1.1e-09 68.2 96 40.6
Cre10.g467100 Chlamydomonas reinhardtii HOM05D004586 ORTHO05D005266 1.6e-08 64.3 185 29.7
Carub.0006s3370 Capsella rubella HOM05D020923 ORTHO05D021440 2.1e-08 63.9 112 39.3
DCAR_012988 Daucus carota HOM05D004586 ORTHO05D005266 3.4e-06 56.6 41 65.9


User provided reference genes

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