Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03672 Nelumbo nucifera HOM05D001624 ORTHO05D001530 1.0e-28 129.4 67 100.0
Nn4g25551 Nelumbo nucifera HOM05D001624 ORTHO05D001530 3.8e-15 84.3 49 85.7
Nn3g21745 Nelumbo nucifera HOM05D001624 ORTHO05D001530 9.6e-11 69.7 51 76.5
TAR365G0349 Trochodendron aralioides HOM05D001624 ORTHO05D001530 2.8e-10 68.2 48 75.0
Cfa015291 Carpinus fangiana HOM05D001624 ORTHO05D001530 8.2e-10 66.6 50 72.0
Haze_01322 Corylus avellana HOM05D001624 ORTHO05D001530 8.2e-10 66.6 50 72.0
Haze_01323 Corylus avellana HOM05D001624 ORTHO05D001530 8.2e-10 66.6 50 72.0
Gohir.A09G240800 Gossypium hirsutum HOM05D001624 ORTHO05D001530 8.2e-10 66.6 48 70.8
Gohir.D09G241500 Gossypium hirsutum HOM05D001624 ORTHO05D001530 8.2e-10 66.6 48 70.8
Gorai.006G265000 Gossypium raimondii HOM05D001624 ORTHO05D001530 8.2e-10 66.6 48 70.8
TAR633G2530 Trochodendron aralioides HOM05D001624 ORTHO05D001530 1.4e-09 65.9 47 76.6
Lsat_1_v5_gn_1_41680 Lactuca sativa HOM05D001624 ORTHO05D001530 1.8e-09 65.5 48 66.7
CSS0034052 Camellia sinensis var. sinensis HOM05D001624 ORTHO05D001530 2.4e-09 65.1 48 70.8
Manes.15G001200 Manihot esculenta HOM05D001624 ORTHO05D001530 3.1e-09 64.7 48 72.9
TAR636G0825 Trochodendron aralioides HOM05D001624 ORTHO05D001530 3.1e-09 64.7 50 72.0
CSS0042572 Camellia sinensis var. sinensis HOM05D001624 ORTHO05D001530 5.3e-09 63.9 47 74.5
CiPaw.01G136800 Carya illinoinensis HOM05D001624 ORTHO05D001530 5.3e-09 63.9 60 61.7
CSS0047681 Camellia sinensis var. sinensis HOM05D001624 ORTHO05D001530 6.9e-09 63.5 48 68.8
Manes.03G206200 Manihot esculenta HOM05D001624 ORTHO05D001530 1.5e-08 62.4 48 68.8
TWI09G0307 Tripterygium wilfordii HOM05D001624 ORTHO05D001530 1.5e-08 62.4 48 68.8
TWI53G1570 Tripterygium wilfordii HOM05D001624 ORTHO05D001530 2.0e-08 62.0 48 68.8
MELO3C021260.2 Cucumis melo HOM05D001624 ORTHO05D001530 2.6e-08 61.6 47 72.3
Oeu001163.1 Olea europaea HOM05D001624 ORTHO05D001530 2.6e-08 61.6 48 64.6
Peaxi162Scf00228g00410 Petunia axillaris HOM05D001624 ORTHO05D001530 2.6e-08 61.6 48 66.7
Dinv30901 Davidia involucrata HOM05D001624 ORTHO05D001530 3.4e-08 61.2 47 66.0
Sed0009798 Sechium edule HOM05D001624 ORTHO05D001530 3.4e-08 61.2 47 72.3
Sc25g0003220 Simmondsia chinensis HOM05D001624 ORTHO05D001530 3.4e-08 61.2 48 72.9
CiPaw.02G073700 Carya illinoinensis HOM05D001624 ORTHO05D001530 4.5e-08 60.8 51 66.7
CsaV3_6G028530 Cucumis sativus L. HOM05D001624 ORTHO05D001530 4.5e-08 60.8 47 72.3
Rhsim04G0240500 Rhododendron simsii HOM05D001624 ORTHO05D001530 4.5e-08 60.8 46 69.6
Cpa.g.sc9.41 Carica papaya HOM05D001624 ORTHO05D001530 5.8e-08 60.5 57 59.6
Ciclev10005589m.g Citrus clementina HOM05D001624 ORTHO05D001530 5.8e-08 60.5 36 83.3
ClCG06G004500 Citrullus lanatus HOM05D001624 ORTHO05D001530 7.6e-08 60.1 47 70.2
Duzib151G0821 Durio zibethinus HOM05D001624 ORTHO05D001530 7.6e-08 60.1 48 72.9
Thecc.04G303600 Theobroma cacao HOM05D001624 ORTHO05D001530 1.0e-07 59.7 48 72.9
Lsat_1_v5_gn_6_1340 Lactuca sativa HOM05D001624 ORTHO05D001530 1.7e-07 58.9 52 67.3
Nitab4.5_0000177g0010 Nicotiana tabacum HOM05D001624 ORTHO05D001530 1.7e-07 58.9 48 64.6
Prupe.1G115100 Prunus persica HOM05D001624 ORTHO05D001530 1.7e-07 58.9 40 72.5
Actinidia18461 Actinidia chinensis HOM05D001624 ORTHO05D001530 2.2e-07 58.5 48 60.4
MD13G1150900 Malus domestica HOM05D001624 ORTHO05D001530 2.2e-07 58.5 57 57.9
Sed0008004 Sechium edule HOM05D001624 ORTHO05D001530 2.2e-07 58.5 47 66.0
TAR362G0129 Trochodendron aralioides HOM05D001624 ORTHO05D001530 2.2e-07 58.5 49 67.3
vmacro15177 Vaccinium macrocarpon HOM05D001624 ORTHO05D001530 2.2e-07 58.5 47 74.5
CARHR081130 Cardamine hirsuta HOM05D001624 ORTHO05D001530 2.9e-07 58.2 50 64.0
COL.COLO4_34589 Corchorus olitorius HOM05D001624 ORTHO05D001530 2.9e-07 58.2 48 70.8
Gohir.A10G173600 Gossypium hirsutum HOM05D001624 ORTHO05D001530 2.9e-07 58.2 48 68.8
Gohir.D02G060300 Gossypium hirsutum HOM05D001624 ORTHO05D001530 2.9e-07 58.2 48 68.8
Gorai.005G067900 Gossypium raimondii HOM05D001624 ORTHO05D001530 2.9e-07 58.2 48 68.8
PGR031G3268 Punica granatum HOM05D001624 ORTHO05D001530 2.9e-07 58.2 48 66.7
Gohir.A02G055300 Gossypium hirsutum HOM05D001624 ORTHO05D001530 3.8e-07 57.8 48 68.8
MD16G1151400 Malus domestica HOM05D001624 ORTHO05D001530 3.8e-07 57.8 57 57.9
Nitab4.5_0000931g0020 Nicotiana tabacum HOM05D001624 ORTHO05D001530 3.8e-07 57.8 52 61.5
Carub.0003s0605 Capsella rubella HOM05D001624 ORTHO05D001530 4.9e-07 57.4 51 62.7
Duzib212G0422 Durio zibethinus HOM05D001624 ORTHO05D001530 4.9e-07 57.4 48 70.8
TWI73G0440 Tripterygium wilfordii HOM05D001624 ORTHO05D001530 4.9e-07 57.4 47 66.0
Cfa006726 Carpinus fangiana HOM05D001624 ORTHO05D001530 6.5e-07 57.0 48 68.8
Duzib052G0163 Durio zibethinus HOM05D001624 ORTHO05D001530 6.5e-07 57.0 48 62.5
Hma1.2p1_0078F.1_g039913 Hydrangea macrophylla HOM05D001624 ORTHO05D001530 6.5e-07 57.0 49 63.3
Hma1.2p1_0078F.1_g039916 Hydrangea macrophylla HOM05D001624 ORTHO05D001530 6.5e-07 57.0 49 63.3
Hma1.2p1_2947F.1_g330660 Hydrangea macrophylla HOM05D001624 ORTHO05D001530 6.5e-07 57.0 49 63.3
Os03g0311600 Oryza sativa ssp. japonica HOM05D001624 ORTHO05D001530 6.5e-07 57.0 47 59.6
Sc19g0002970 Simmondsia chinensis HOM05D001624 ORTHO05D001530 6.5e-07 57.0 48 68.8
vmacro08027 Vaccinium macrocarpon HOM05D001624 ORTHO05D001530 6.5e-07 57.0 49 69.4
AL3G17640 Arabidopsis lyrata HOM05D001624 ORTHO05D001530 8.4e-07 56.6 50 62.0
Hma1.2p1_0013F.1_g008370 Hydrangea macrophylla HOM05D001624 ORTHO05D001530 8.4e-07 56.6 49 65.3
Lsat_1_v5_gn_6_116760 Lactuca sativa HOM05D001624 ORTHO05D001530 8.4e-07 56.6 48 60.4
Potri.008G103500 Populus trichocarpa HOM05D001624 ORTHO05D001530 8.4e-07 56.6 48 62.5
Sabra08G0078200 Salix brachista HOM05D001624 ORTHO05D001530 8.4e-07 56.6 48 62.5
Thhalv10021468m.g Eutrema salsugineum HOM05D001624 ORTHO05D001530 1.1e-06 56.2 50 62.0
Gohir.D10G180100 Gossypium hirsutum HOM05D001624 ORTHO05D001530 1.1e-06 56.2 48 68.8
Gorai.002G030700 Gossypium raimondii HOM05D001624 ORTHO05D001530 1.1e-06 56.2 50 60.0
Gorai.011G201700 Gossypium raimondii HOM05D001624 ORTHO05D001530 1.1e-06 56.2 48 68.8
Lj6P692T33 Lonicera japonica HOM05D001624 ORTHO05D001530 1.1e-06 56.2 48 64.6
Nn8g40244 Nelumbo nucifera HOM05D001624 ORTHO05D001530 1.1e-06 56.2 48 64.6
Atru.chr4.3044 Acer truncatum HOM05D001624 ORTHO05D001530 1.4e-06 55.8 36 75.0
HanXRQChr13g0395281 Helianthus annuus HOM05D001624 ORTHO05D001530 1.4e-06 55.8 48 56.2
Sp3g05520 Schrenkiella parvula HOM05D001624 ORTHO05D001530 1.4e-06 55.8 50 62.0
Aa31LG5G17150 Aethionema arabicum HOM05D001624 ORTHO05D001530 1.9e-06 55.5 50 62.0
AT3G06590 Arabidopsis thaliana HOM05D001624 ORTHO05D001530 1.9e-06 55.5 50 60.0
CiPaw.07G030500 Carya illinoinensis HOM05D001624 ORTHO05D001530 1.9e-06 55.5 47 63.8
Dinv24470 Davidia involucrata HOM05D001624 ORTHO05D001530 1.9e-06 55.5 47 63.8
Gorai.002G030600 Gossypium raimondii HOM05D001624 ORTHO05D001530 1.9e-06 55.5 50 62.0
Potri.010G147400 Populus trichocarpa HOM05D001624 ORTHO05D001530 1.9e-06 55.5 48 60.4
EL10Ac3g05525 Beta vulgaris HOM05D001624 ORTHO05D001530 2.5e-06 55.1 49 61.2
CANSAT78G2092 Cannabis sativa HOM05D001624 ORTHO05D001530 2.5e-06 55.1 47 63.8
DCAR_023362 Daucus carota HOM05D001624 ORTHO05D001530 2.5e-06 55.1 48 58.3
Glyma.15G139200 Glycine max HOM05D001624 ORTHO05D001530 2.5e-06 55.1 35 80.0
QL06p012685 Quercus lobata HOM05D001624 ORTHO05D001530 2.5e-06 55.1 50 62.0
Rhsim11G0096800 Rhododendron simsii HOM05D001624 ORTHO05D001530 2.5e-06 55.1 48 62.5
HPP92_013514 Vanilla planifolia HOM05D001624 ORTHO05D001530 2.5e-06 55.1 48 62.5
A05p41460 Brassica napus HOM05D001624 ORTHO05D001530 3.2e-06 54.7 51 58.8
C05p60660 Brassica napus HOM05D001624 ORTHO05D001530 3.2e-06 54.7 51 58.8
BolC5t34725H Brassica oleracea HOM05D001624 ORTHO05D001530 3.2e-06 54.7 51 58.8
BraA01t04430Z Brassica rapa HOM05D001624 ORTHO05D001530 3.2e-06 54.7 50 60.0
BraA05t22866Z Brassica rapa HOM05D001624 ORTHO05D001530 3.2e-06 54.7 51 58.8
MELO3C006722.2 Cucumis melo HOM05D001624 ORTHO05D001530 3.2e-06 54.7 48 60.4
CsaV3_3G015270 Cucumis sativus L. HOM05D001624 ORTHO05D001530 3.2e-06 54.7 48 60.4
Oeu061711.1 Olea europaea HOM05D001624 ORTHO05D001530 3.2e-06 54.7 48 60.4
Phvul.003G116200 Phaseolus vulgaris HOM05D001624 ORTHO05D001530 3.2e-06 54.7 48 60.4
Rhsim02G0003000 Rhododendron simsii HOM05D001624 ORTHO05D001530 3.2e-06 54.7 47 68.1
Sabra10G0113700 Salix brachista HOM05D001624 ORTHO05D001530 3.2e-06 54.7 48 58.3
THA.LOC104802707 Tarenaya hassleriana HOM05D001624 ORTHO05D001530 3.2e-06 54.7 50 60.0
AUR62016228 Chenopodium quinoa HOM05D001624 ORTHO05D001530 4.2e-06 54.3 55 56.4
Haze_04034 Corylus avellana HOM05D001624 ORTHO05D001530 4.2e-06 54.3 48 66.7
EL10Ac4g09473 Beta vulgaris HOM05D001624 ORTHO05D001530 5.5e-06 53.9 48 64.6
Carub.0003s1684 Capsella rubella HOM05D001624 ORTHO05D001530 7.1e-06 53.5 48 56.2
Glyma.09G034500 Glycine max HOM05D001624 ORTHO05D001530 7.1e-06 53.5 78 47.4
Gohir.D01G023553 Gossypium hirsutum HOM05D001624 ORTHO05D001530 7.1e-06 53.5 54 55.6
Hma1.2p1_0008F-1.1_g005490 Hydrangea macrophylla HOM05D001624 ORTHO05D001530 7.1e-06 53.5 48 64.6
Nitab4.5_0001338g0060 Nicotiana tabacum HOM05D001624 ORTHO05D001530 7.1e-06 53.5 49 61.2
Sed0008229 Sechium edule HOM05D001624 ORTHO05D001530 7.1e-06 53.5 70 48.6
Aqoxy2G02694 Aquilegia oxysepala HOM05D001624 ORTHO05D001530 9.3e-06 53.1 32 78.1


User provided reference genes

Program Settings