Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03595 Nelumbo nucifera HOM05D005148 ORTHO05D006218 1.5e-235 819.3 481 100.0
Nn1g07082 Nelumbo nucifera HOM05D005148 ORTHO05D006218 3.2e-100 369.8 331 78.2
TAR626G1940 Trochodendron aralioides HOM05D005148 ORTHO05D006218 3.2e-84 316.6 269 67.7
Duzib268G1307 Durio zibethinus HOM05D005148 ORTHO05D006218 9.8e-81 305.1 261 69.0
Gorai.013G161200 Gossypium raimondii HOM05D005148 ORTHO05D006218 8.3e-80 302.0 257 68.5
Thecc.07G044600 Theobroma cacao HOM05D005148 ORTHO05D006218 7.0e-79 298.9 258 69.0
Gohir.A13G139300 Gossypium hirsutum HOM05D005148 ORTHO05D006218 5.9e-78 295.8 249 69.1
Dinv22285 Davidia involucrata HOM05D005148 ORTHO05D006218 5.0e-77 292.7 253 68.8
CSS0036538 Camellia sinensis var. sinensis HOM05D005148 ORTHO05D006218 1.1e-76 291.6 249 69.9
Gohir.D13G144100 Gossypium hirsutum HOM05D005148 ORTHO05D006218 3.6e-75 286.6 247 68.4
Duzib213G0030 Durio zibethinus HOM05D005148 ORTHO05D006218 6.8e-74 282.3 264 64.4
Dinv40732 Davidia involucrata HOM05D005148 ORTHO05D006218 2.6e-73 280.4 353 59.5
Sed0006852 Sechium edule HOM05D005148 ORTHO05D006218 9.8e-73 278.5 259 66.0
CAN.G1781.10 Capsicum annuum HOM05D005148 ORTHO05D006218 8.3e-72 275.4 252 63.1
Rhsim04G0000500 Rhododendron simsii HOM05D005148 ORTHO05D006218 8.3e-72 275.4 245 64.9
PGSC0003DMG400014426 Solanum tuberosum HOM05D005148 ORTHO05D006218 5.4e-71 272.7 252 63.5
MD03G1208700 Malus domestica HOM05D005148 ORTHO05D006218 3.5e-70 270.0 328 53.4
Prupe.4G208000 Prunus persica HOM05D005148 ORTHO05D006218 7.8e-70 268.9 260 62.7
Sopen10g002340 Solanum pennellii HOM05D005148 ORTHO05D006218 1.0e-69 268.5 252 62.7
GSVIVG01030604001 Vitis vinifera HOM05D005148 ORTHO05D006218 1.1e-68 265.0 253 64.8
CiPaw.11G186500 Carya illinoinensis HOM05D005148 ORTHO05D006218 5.6e-68 262.7 175 80.0
Hma1.2p1_0938F.1_g239180 Hydrangea macrophylla HOM05D005148 ORTHO05D006218 5.6e-68 262.7 270 60.4
Psat5g183400 Pisum sativum HOM05D005148 ORTHO05D006218 7.3e-68 262.3 247 63.6
ATR0752G127 Amborella trichopoda HOM05D005148 ORTHO05D006218 2.1e-67 260.8 222 66.7
Cc05_g13470 Coffea canephora HOM05D005148 ORTHO05D006218 3.6e-67 260.0 236 63.1
Solyc10g006390.3 Solanum lycopersicum HOM05D005148 ORTHO05D006218 3.6e-67 260.0 252 61.5
HPP92_019925 Vanilla planifolia HOM05D005148 ORTHO05D006218 8.0e-67 258.8 338 50.6
Migut.H01845 Erythranthe guttata HOM05D005148 ORTHO05D006218 1.8e-66 257.7 242 62.0
QL06p002269 Quercus lobata HOM05D005148 ORTHO05D006218 6.8e-66 255.8 203 70.4
Eucgr.F00968 Eucalyptus grandis HOM05D005148 ORTHO05D006218 7.5e-65 252.3 249 63.1
HanXRQChr08g0235221 Helianthus annuus HOM05D005148 ORTHO05D006218 9.8e-65 251.9 269 56.9
CsaV3_3G023250 Cucumis sativus L. HOM05D005148 ORTHO05D006218 1.3e-64 251.5 250 62.4
Nitab4.5_0005048g0010 Nicotiana tabacum HOM05D005148 ORTHO05D006218 1.3e-64 251.5 321 50.2
FvH4_3g22101 Fragaria vesca HOM05D005148 ORTHO05D006218 1.7e-64 251.1 319 51.1
MD11G1223400 Malus domestica HOM05D005148 ORTHO05D006218 2.2e-64 250.8 249 61.4
Ciclev10008061m.g Citrus clementina HOM05D005148 ORTHO05D006218 2.9e-64 250.4 215 68.4
FAN16G3277 Fragaria x ananassa HOM05D005148 ORTHO05D006218 3.7e-64 250.0 319 51.1
Atru.chr2.3744 Acer truncatum HOM05D005148 ORTHO05D006218 1.1e-63 248.4 201 66.7
Aqoxy1G03309 Aquilegia oxysepala HOM05D005148 ORTHO05D006218 1.1e-63 248.4 174 74.1
Aqoxy3G00120 Aquilegia oxysepala HOM05D005148 ORTHO05D006218 1.1e-63 248.4 174 74.1
Ca_14709_v3 Cicer arietinum L. HOM05D005148 ORTHO05D006218 2.4e-63 247.3 248 62.9
Atru.chr2.3757 Acer truncatum HOM05D005148 ORTHO05D006218 3.2e-63 246.9 201 66.7
FAN21G2996 Fragaria x ananassa HOM05D005148 ORTHO05D006218 7.0e-63 245.7 319 50.5
Lalb_Chr20g0114191 Lupinus albus HOM05D005148 ORTHO05D006218 1.6e-62 244.6 180 75.0
Glyma.09G101200 Glycine max HOM05D005148 ORTHO05D006218 2.0e-62 244.2 298 53.7
PGR042G3618 Punica granatum HOM05D005148 ORTHO05D006218 2.0e-62 244.2 275 54.9
Cfa020393 Carpinus fangiana HOM05D001748 ORTHO05D001759 2.7e-62 243.8 175 76.6
Phvul.006G037500 Phaseolus vulgaris HOM05D005148 ORTHO05D006218 7.8e-62 242.3 256 60.2
CANSAT54G0232 Cannabis sativa HOM05D005148 ORTHO05D006218 2.3e-61 240.7 257 58.4
CDE05G0897 Ceratophyllum demersum HOM05D005148 ORTHO05D006218 2.5e-60 237.3 274 57.7
Medtr3g049440 Medicago truncatula HOM05D005148 ORTHO05D006218 3.3e-60 236.9 174 73.0
arahy.Tifrunner.gnm1.ann1.XKJ78D Arachis hypogaea HOM05D005148 ORTHO05D006218 7.3e-60 235.7 181 72.4
QL08p012200 Quercus lobata HOM05D005148 ORTHO05D006218 9.5e-60 235.3 127 87.4
VMungo0540G1829 Vigna mungo HOM05D005148 ORTHO05D006218 9.5e-60 235.3 274 58.0
arahy.Tifrunner.gnm1.ann1.ICWX02 Arachis hypogaea HOM05D005148 ORTHO05D006218 1.2e-59 235.0 176 73.3
Sc03g0008800 Simmondsia chinensis HOM05D005148 ORTHO05D006218 1.2e-59 235.0 196 65.3
MSTRG.12962 Avicennia marina HOM05D005148 ORTHO05D006218 2.1e-59 234.2 210 64.3
QL03p062207 Quercus lobata HOM05D005148 ORTHO05D006218 2.1e-59 234.2 356 47.2
QL03p062820 Quercus lobata HOM05D005148 ORTHO05D006218 2.1e-59 234.2 356 47.2
RcHm_v2.0_Chr5g0037921 Rosa chinensis HOM05D005148 ORTHO05D006218 3.6e-59 233.4 256 56.2
TWI38G1498 Tripterygium wilfordii HOM05D005148 ORTHO05D006218 3.6e-59 233.4 247 59.5
Cpa.g.sc97.43 Carica papaya HOM05D005148 ORTHO05D006218 4.7e-59 233.0 138 85.5
Lsat_1_v5_gn_5_13800 Lactuca sativa HOM05D005148 ORTHO05D006218 8.1e-59 232.3 262 54.6
Manes.03G127500 Manihot esculenta HOM05D005148 ORTHO05D006218 8.1e-59 232.3 143 82.5
ECA246G0930 Erigeron canadensis HOM05D005148 ORTHO05D006218 2.3e-58 230.7 272 53.7
Nitab4.5_0001393g0210 Nicotiana tabacum HOM05D005148 ORTHO05D006218 2.3e-58 230.7 243 56.8
AL3G34380 Arabidopsis lyrata HOM05D005148 ORTHO05D006218 3.1e-58 230.3 259 54.8
Lj6g0026690 Lotus japonicus HOM05D005148 ORTHO05D006218 3.1e-58 230.3 137 83.9
Ah.04g165650 Amaranthus hybridus HOM05D001748 ORTHO05D001759 8.9e-58 228.8 350 48.3
Glyma.18G102900 Glycine max HOM05D005148 ORTHO05D006218 1.5e-57 228.0 291 52.9
COL.COLO4_09623 Corchorus olitorius HOM05D005148 ORTHO05D006218 3.4e-57 226.9 261 56.7
SGA_v2.0_scaffold115G32129 Striga asiatica HOM05D005148 ORTHO05D006218 4.4e-57 226.5 278 52.2
AUR62008441 Chenopodium quinoa HOM05D005148 ORTHO05D006218 7.5e-57 225.7 336 53.3
TPR.G13552 Trifolium pratense HOM05D005148 ORTHO05D006218 1.3e-56 224.9 119 88.2
Atru.chr2.3269 Acer truncatum HOM05D005148 ORTHO05D006218 1.9e-55 221.1 127 81.1
RcHm_v2.0_Chr4g0405041 Rosa chinensis HOM05D005148 ORTHO05D006218 5.4e-55 219.5 256 54.3
BcaB04g19113 Brassica carinata HOM05D005148 ORTHO05D006218 9.2e-55 218.8 265 54.3
CDE02G2943 Ceratophyllum demersum HOM05D005148 ORTHO05D006218 1.6e-54 218.0 239 56.9
SEGI_03914 Sequoiadendron giganteum HOM05D005148 ORTHO05D006218 1.6e-54 218.0 264 54.5
EL10Ac4g07904 Beta vulgaris HOM05D005148 ORTHO05D006218 2.7e-54 217.2 127 79.5
Potri.001G420400 Populus trichocarpa HOM05D005148 ORTHO05D006218 3.5e-54 216.9 271 52.0
Carub.0003s2052 Capsella rubella HOM05D005148 ORTHO05D006218 6.6e-53 212.6 276 48.2
PSO541G0017 Papaver somniferum HOM05D005148 ORTHO05D006218 1.1e-52 211.8 268 51.1
Haze_06035 Corylus avellana HOM05D001748 ORTHO05D006218 2.5e-52 210.7 175 69.1
BraA03t13333Z Brassica rapa HOM05D005148 ORTHO05D006218 4.3e-52 209.9 246 54.5
EL10Ac5g11049 Beta vulgaris HOM05D005148 ORTHO05D006218 5.6e-52 209.5 153 71.2
C03p51180 Brassica napus HOM05D005148 ORTHO05D006218 2.1e-51 207.6 256 53.1
A03p41800 Brassica napus HOM05D005148 ORTHO05D006218 3.6e-51 206.8 244 54.9
Zm00001eb286040 Zea mays HOM05D005148 ORTHO05D006218 1.4e-50 204.9 205 59.0
Hund14204 Selenicereus undatus HOM05D005148 ORTHO05D006218 1.8e-50 204.5 127 78.0
CARHR096320 Cardamine hirsuta HOM05D005148 ORTHO05D006218 3.1e-50 203.8 274 51.1
Sp3g18560 Schrenkiella parvula HOM05D005148 ORTHO05D006218 3.1e-50 203.8 263 50.6
BcaC01g03550 Brassica carinata HOM05D005148 ORTHO05D006218 4.0e-50 203.4 258 52.7
BolC3t17407H Brassica oleracea HOM05D005148 ORTHO05D006218 4.0e-50 203.4 258 52.7
DCAR_019897 Daucus carota HOM05D005148 ORTHO05D006218 4.0e-50 203.4 259 52.1
AT3G20550 Arabidopsis thaliana HOM05D005148 ORTHO05D006218 6.8e-50 202.6 123 75.6
Manes.15G074502 Manihot esculenta HOM05D005148 ORTHO05D006218 1.5e-49 201.4 210 58.6
Medtr5g081620 Medicago truncatula HOM05D005148 ORTHO05D006218 1.5e-49 201.4 103 92.2
Os05g0545600 Oryza sativa ssp. japonica HOM05D005148 ORTHO05D006218 4.9e-48 196.4 179 61.5
PSO675G4432 Papaver somniferum HOM05D005148 ORTHO05D006218 1.9e-47 194.5 264 49.6
Aa31LG8G7350 Aethionema arabicum HOM05D005148 ORTHO05D006218 2.1e-46 191.0 287 46.0
AUR62021649 Chenopodium quinoa HOM05D005148 ORTHO05D006218 6.0e-46 189.5 347 41.2
Oeu007601.1 Olea europaea HOM05D005148 ORTHO05D006218 3.9e-45 186.8 283 45.9
Potri.011G136102 Populus trichocarpa HOM05D005148 ORTHO05D006218 2.5e-44 184.1 111 79.3
AagrBONN_evm.TU.Sc2ySwM_362.1748 Anthoceros agrestis HOM05D005148 ORTHO05D006218 7.3e-44 182.6 173 59.0
Aqoxy5G02091 Aquilegia oxysepala HOM05D005148 ORTHO05D006218 1.2e-43 181.8 191 58.1
Mapoly0068s0031 Marchantia polymorpha HOM05D005148 ORTHO05D006218 1.2e-43 181.8 286 47.2
Pp3c19_14080 Physcomitrium patens HOM05D005148 ORTHO05D006218 2.1e-43 181.0 157 59.9
Rhsim04G0001600 Rhododendron simsii HOM05D005148 ORTHO05D006218 4.7e-43 179.9 241 52.7
CBR_g38419 Chara braunii HOM05D005148 ORTHO05D006218 1.5e-41 174.9 222 50.9
FAN05G2630 Fragaria x ananassa HOM05D005148 ORTHO05D006218 2.6e-41 174.1 111 71.2
FAN09G4771 Fragaria x ananassa HOM05D005148 ORTHO05D006218 1.7e-40 171.4 111 69.4
FvH4_6g43590 Fragaria vesca HOM05D005148 ORTHO05D006218 8.4e-40 169.1 111 67.6
FAN14G1203 Fragaria x ananassa HOM05D005148 ORTHO05D006218 1.3e-37 161.8 111 65.8
ClCG05G014480 Citrullus lanatus HOM05D005148 ORTHO05D006218 1.7e-37 161.4 300 43.3
Peaxi162Scf00032g02417 Petunia axillaris HOM05D005148 ORTHO05D006218 1.7e-37 161.4 270 47.4
SMO367G0870 Selaginella moellendorffii HOM05D005148 ORTHO05D006218 2.3e-37 161.0 108 69.4
FAN11G3177 Fragaria x ananassa HOM05D005148 ORTHO05D006218 4.0e-34 150.2 330 38.2
Haze_09643 Corylus avellana HOM05D005148 ORTHO05D006218 5.3e-34 149.8 122 73.0
Actinidia10719 Actinidia chinensis HOM05D005148 ORTHO05D006218 7.9e-30 136.0 163 60.1
Actinidia10720 Actinidia chinensis HOM05D005148 ORTHO05D006218 1.3e-29 135.2 70 85.7
MCO09G834 Micromonas commoda HOM05D005148 ORTHO05D006218 2.3e-29 134.4 118 55.9
MELO3C018081.2 Cucumis melo HOM05D005148 ORTHO05D006218 3.3e-28 130.6 81 81.5
unitig_22.g5751 Utricularia gibba HOM05D005148 ORTHO05D006218 1.6e-27 128.3 216 45.4
Cre09.g390430 Chlamydomonas reinhardtii HOM05D005148 ORTHO05D006218 1.4e-26 125.2 121 53.7
SalBow7G4088 Salvia bowleyana HOM05D005148 ORTHO05D006218 6.9e-26 122.9 230 39.6
vmacro09737 Vaccinium macrocarpon HOM05D005148 ORTHO05D006218 6.9e-26 122.9 210 46.7
PRCOL_00003554 Prasinoderma coloniale HOM05D005148 ORTHO05D006218 3.5e-22 110.5 105 54.3
MELO3C030736.2 Cucumis melo HOM05D005148 ORTHO05D006218 1.3e-21 108.6 55 90.9
Haze_09642 Corylus avellana HOM05D005148 ORTHO05D006218 8.7e-21 105.9 55 87.3
Sabra16G0285400 Salix brachista HOM05D005148 ORTHO05D006218 1.6e-19 101.7 126 53.2
Thhalv10011119m.g Eutrema salsugineum HOM05D005148 ORTHO05D006218 2.8e-19 100.9 55 78.2
Thhalv10024125m.g Eutrema salsugineum HOM05D005148 ORTHO05D006218 2.8e-19 100.9 55 78.2
TPR.G40522 Trifolium pratense HOM05D005148 ORTHO05D006218 6.9e-18 96.3 49 87.8
Cfa025954 Carpinus fangiana HOM05D005148 ORTHO05D006218 9.0e-18 95.9 171 41.5
TPR.G13540 Trifolium pratense HOM05D005148 ORTHO05D006218 2.0e-17 94.7 49 85.7
AT2G24410 Arabidopsis thaliana HOM05D005148 ORTHO05D006218 2.9e-16 90.9 65 66.2
MD06G1125500 Malus domestica HOM05D005148 ORTHO05D006218 1.1e-15 89.0 101 45.5
C01p18700 Brassica napus HOM05D005148 ORTHO05D006218 8.7e-13 79.3 52 71.2
RcHm_v2.0_Chr2g0160171 Rosa chinensis HOM05D005148 ORTHO05D006218 4.8e-11 73.6 68 52.9
Lsat_1_v5_gn_5_38280 Lactuca sativa HOM05D005148 ORTHO05D006218 2.2e-08 64.7 48 60.4
FvH4_6g18040 Fragaria vesca HOM05D000874 ORTHO05D001049 6.5e-08 63.2 172 35.5


User provided reference genes

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