Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 4.3e-264 914.1 450 100.0
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 4.2e-219 764.6 448 84.4
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 4.2e-219 764.6 449 83.5
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 1.8e-217 759.2 448 83.9
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 2.3e-217 758.8 448 83.5
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 3.0e-217 758.4 450 83.8
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 3.9e-217 758.1 448 83.0
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 1.5e-216 756.1 421 90.0
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 2.0e-216 755.7 448 83.5
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 3.3e-216 755.0 448 83.3
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 5.7e-216 754.2 448 82.4
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 2.2e-215 752.3 448 82.4
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 3.7e-215 751.5 448 82.1
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 3.7e-215 751.5 448 83.0
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 4.8e-215 751.1 451 82.7
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 8.2e-215 750.4 450 82.2
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 3.1e-214 748.4 450 82.2
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 4.1e-214 748.0 450 82.2
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 7.0e-214 747.3 451 82.7
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 9.1e-214 746.9 448 82.1
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 9.1e-214 746.9 450 82.4
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 1.2e-213 746.5 450 82.7
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 1.6e-213 746.1 450 82.2
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 1.6e-213 746.1 450 81.8
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 2.6e-213 745.3 450 81.8
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 2.6e-213 745.3 447 82.6
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 2.6e-213 745.3 452 81.4
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 2.6e-213 745.3 448 81.0
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 3.5e-213 745.0 448 81.9
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 3.5e-213 745.0 450 82.0
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 3.5e-213 745.0 449 81.1
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 4.5e-213 744.6 450 82.0
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 7.7e-213 743.8 450 82.0
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 7.7e-213 743.8 448 81.0
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 1.0e-212 743.4 450 81.6
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 1.0e-212 743.4 450 81.8
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.3e-212 743.0 450 81.6
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.7e-212 742.7 450 81.8
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 1.7e-212 742.7 446 81.6
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 1.7e-212 742.7 448 80.8
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 2.2e-212 742.3 448 80.8
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 3.8e-212 741.5 450 81.3
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 5.0e-212 741.1 448 81.2
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 5.0e-212 741.1 448 82.6
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 6.5e-212 740.7 448 79.9
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 6.5e-212 740.7 475 78.9
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 8.5e-212 740.3 450 81.1
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 1.1e-211 740.0 448 81.9
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 1.5e-211 739.6 448 81.5
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.9e-211 739.2 450 81.8
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 2.5e-211 738.8 448 81.0
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 2.5e-211 738.8 450 81.1
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 3.2e-211 738.4 448 80.8
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 4.2e-211 738.0 450 81.3
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 4.2e-211 738.0 448 81.2
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 5.5e-211 737.6 448 81.0
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 5.5e-211 737.6 450 80.9
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 7.2e-211 737.3 448 81.2
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 7.2e-211 737.3 450 81.6
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 1.6e-210 736.1 450 81.6
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 1.6e-210 736.1 449 80.2
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.7e-210 735.3 450 81.3
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 2.7e-210 735.3 450 81.6
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 2.7e-210 735.3 450 80.9
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 3.6e-210 734.9 449 80.0
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 4.7e-210 734.6 448 81.0
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 8.0e-210 733.8 450 80.9
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 1.0e-209 733.4 451 80.5
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 1.0e-209 733.4 451 80.9
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 1.4e-209 733.0 448 81.2
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 3.0e-209 731.9 450 82.4
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 5.2e-209 731.1 448 80.6
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 6.7e-209 730.7 452 80.8
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 1.2e-208 729.9 448 78.8
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 1.5e-208 729.6 448 79.9
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 7.5e-208 727.2 451 80.3
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 9.7e-208 726.9 450 80.4
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.3e-207 726.5 494 75.5
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 1.7e-207 726.1 448 79.9
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 2.8e-207 725.3 451 79.4
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 2.8e-207 725.3 451 79.4
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 3.7e-207 724.9 449 79.1
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 4.8e-207 724.5 448 79.7
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 6.3e-207 724.2 451 79.4
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 6.3e-207 724.2 448 78.8
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 1.1e-206 723.4 440 81.6
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 1.1e-206 723.4 451 79.6
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 2.4e-206 722.2 451 79.2
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 4.1e-206 721.5 451 79.6
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 4.1e-206 721.5 451 79.2
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 4.1e-206 721.5 451 79.2
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 1.2e-205 719.9 448 79.0
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.6e-205 719.5 450 78.7
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.6e-205 719.5 450 78.0
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 2.0e-205 719.2 451 78.7
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 2.0e-205 719.2 451 78.9
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 3.5e-205 718.4 451 78.3
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 7.7e-205 717.2 451 78.7
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 7.7e-205 717.2 450 78.4
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 1.7e-204 716.1 451 78.5
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 2.2e-204 715.7 451 77.8
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 1.1e-203 713.4 458 75.8
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 1.9e-203 712.6 452 78.5
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 1.9e-203 712.6 452 78.5
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 1.9e-203 712.6 452 78.8
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 7.2e-203 710.7 450 76.4
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 7.2e-203 710.7 475 75.4
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 1.2e-202 709.9 449 76.6
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 1.6e-202 709.5 448 76.8
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 3.6e-202 708.4 450 76.0
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 2.3e-201 705.7 449 76.2
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 1.1e-198 696.8 425 81.6
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 1.1e-198 696.8 559 65.8
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 4.5e-197 691.4 424 80.0
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 1.1e-195 686.8 445 76.9
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 1.5e-195 686.4 459 75.4
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 8.0e-194 680.6 452 75.2
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 2.8e-191 672.2 452 75.7
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 4.5e-189 664.8 400 81.8
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 5.2e-185 651.4 451 70.1
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 9.8e-184 647.1 443 72.2
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 4.9e-183 644.8 398 79.6
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 4.1e-182 641.7 400 78.8
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 9.2e-182 640.6 444 71.6
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 1.4e-177 626.7 450 71.6
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 7.3e-171 604.4 454 65.0
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 3.6e-170 602.1 452 65.0
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 6.2e-170 601.3 359 82.5
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 2.4e-166 589.3 448 65.6
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 2.1e-165 586.3 422 66.1
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 4.4e-160 568.5 431 68.9
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 8.4e-159 564.3 430 64.2
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 1.5e-152 543.5 451 64.1
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 2.1e-146 523.1 403 67.7
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 6.0e-141 505.0 352 74.1
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 1.3e-135 487.3 442 55.7
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 4.2e-126 455.7 287 79.4
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 2.4e-121 439.9 297 73.7
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 6.9e-121 438.3 410 55.4
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 5.9e-120 435.3 235 87.7
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 1.5e-115 420.6 226 89.4
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 2.0e-115 420.2 427 51.3
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 1.0e-100 371.3 281 68.0
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 1.4e-92 344.4 238 73.1
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 2.8e-77 293.5 455 40.2
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 4.5e-72 276.2 183 74.3
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 3.9e-71 273.1 432 39.8
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 2.8e-69 266.9 182 70.9
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 4.1e-57 226.5 141 75.2
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 7.1e-57 225.7 140 75.7
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 8.6e-55 218.8 124 82.3
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 3.7e-50 203.4 129 79.1
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 1.5e-22 111.7 138 47.1
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 4.0e-20 103.6 58 79.3
Lsat_1_v5_gn_9_118621 Lactuca sativa HOM05D006894 ORTHO05D008724 1.2e-08 65.5 376 21.8


User provided reference genes

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