Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03403 Nelumbo nucifera HOM05D002380 ORTHO05D008286 0.0e+00 1304.3 648 100.0
GSVIVG01030484001 Vitis vinifera HOM05D002380 ORTHO05D008286 3.6e-280 968.0 587 81.1
PSO541G2284 Papaver somniferum HOM05D002380 ORTHO05D008286 6.4e-269 930.6 588 77.6
CSS0029680 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D008286 8.4e-269 930.2 555 81.1
Cfa014331 Carpinus fangiana HOM05D002380 ORTHO05D008286 3.2e-268 928.3 588 77.7
Actinidia13740 Actinidia chinensis HOM05D002380 ORTHO05D008286 2.3e-266 922.2 588 77.4
TWI18G0959 Tripterygium wilfordii HOM05D002380 ORTHO05D008286 2.3e-266 922.2 579 77.5
CiPaw.04G112000 Carya illinoinensis HOM05D002380 ORTHO05D008286 5.1e-266 921.0 583 78.2
Ciclev10014719m.g Citrus clementina HOM05D002380 ORTHO05D008286 2.1e-264 915.6 586 77.8
QL08p031162 Quercus lobata HOM05D002380 ORTHO05D008286 2.1e-264 915.6 578 78.4
Duzib138G0368 Durio zibethinus HOM05D002380 ORTHO05D008286 2.8e-264 915.2 583 76.8
Hma1.2p1_0445F.1_g154520 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 2.8e-264 915.2 555 80.5
Sed0027871 Sechium edule HOM05D002380 ORTHO05D008286 2.0e-262 909.1 552 78.3
FvH4_6g42610 Fragaria vesca HOM05D002380 ORTHO05D008286 4.4e-262 907.9 587 75.6
Gohir.A07G186600 Gossypium hirsutum HOM05D002380 ORTHO05D008286 2.2e-261 905.6 583 76.3
MD09G1112100 Malus domestica HOM05D002380 ORTHO05D008286 3.8e-261 904.8 588 75.2
Potri.014G156800 Populus trichocarpa HOM05D002380 ORTHO05D008286 3.8e-261 904.8 586 76.1
Prupe.3G212600 Prunus persica HOM05D002380 ORTHO05D008286 8.4e-261 903.7 540 80.4
Gohir.D07G193100 Gossypium hirsutum HOM05D002380 ORTHO05D008286 3.2e-260 901.7 583 76.2
RcHm_v2.0_Chr2g0158461 Rosa chinensis HOM05D002380 ORTHO05D008286 5.4e-260 901.0 582 76.6
Gorai.001G216200 Gossypium raimondii HOM05D002380 ORTHO05D008286 7.1e-260 900.6 583 76.2
ClCG02G002150 Citrullus lanatus HOM05D002380 ORTHO05D008286 3.5e-259 898.3 566 76.0
PSO675G4452 Papaver somniferum HOM05D002380 ORTHO05D008286 4.6e-259 897.9 588 75.7
CsaV3_7G003340 Cucumis sativus L. HOM05D002380 ORTHO05D008286 1.7e-258 896.0 567 75.1
Sopen01g045360 Solanum pennellii HOM05D002380 ORTHO05D008286 3.0e-258 895.2 586 74.7
Cc05_g03220 Coffea canephora HOM05D002380 ORTHO05D008286 4.3e-257 891.3 557 77.2
FAN05G1087 Fragaria x ananassa HOM05D002380 ORTHO05D008286 9.6e-257 890.2 610 72.6
Eucgr.A01100 Eucalyptus grandis HOM05D002380 ORTHO05D008286 2.1e-256 889.0 555 77.3
Thecc.01G180100 Theobroma cacao HOM05D002380 ORTHO05D008286 3.6e-256 888.3 588 74.5
Medtr8g465870 Medicago truncatula HOM05D002380 ORTHO05D008286 6.2e-256 887.5 582 73.4
Solyc01g102950.3 Solanum lycopersicum HOM05D002380 ORTHO05D008286 8.1e-256 887.1 586 74.7
CAN.G855.60 Capsicum annuum HOM05D002380 ORTHO05D008286 3.1e-255 885.2 589 74.2
LjContig00564g0001978 Lotus japonicus HOM05D002380 ORTHO05D008286 3.1e-255 885.2 585 74.2
arahy.Tifrunner.gnm1.ann1.Y9X1U6 Arachis hypogaea HOM05D002380 ORTHO05D008286 1.5e-254 882.9 591 72.9
LjContig00564g0004339 Lotus japonicus HOM05D002380 ORTHO05D008286 2.0e-254 882.5 586 73.9
HanXRQChr10g0306601 Helianthus annuus HOM05D002380 ORTHO05D008286 2.6e-254 882.1 589 73.9
Migut.H01235 Erythranthe guttata HOM05D002380 ORTHO05D008286 1.3e-253 879.8 547 77.5
SalBow1G6561 Salvia bowleyana HOM05D002380 ORTHO05D008286 1.3e-253 879.8 553 76.3
ECA234G2702 Erigeron canadensis HOM05D002380 ORTHO05D008286 2.9e-253 878.6 587 73.4
Atru.chr6.3236 Acer truncatum HOM05D002380 ORTHO05D008286 4.9e-253 877.9 589 75.7
FAN14G4830 Fragaria x ananassa HOM05D002380 ORTHO05D008286 4.9e-253 877.9 605 72.9
arahy.Tifrunner.gnm1.ann1.C2B2I7 Arachis hypogaea HOM05D002380 ORTHO05D008286 2.4e-252 875.5 600 72.0
Glyma.14G046600 Glycine max HOM05D002380 ORTHO05D008286 2.4e-252 875.5 586 73.5
Sabra14G0118600 Salix brachista HOM05D002380 ORTHO05D008286 4.6e-251 871.3 665 67.2
SalBow1G4831 Salvia bowleyana HOM05D002380 ORTHO05D008286 7.9e-251 870.5 553 75.8
VMungo0647G2578 Vigna mungo HOM05D002380 ORTHO05D008286 3.0e-250 868.6 582 73.0
CANSAT64G0203 Cannabis sativa HOM05D002380 ORTHO05D008286 5.6e-249 864.4 590 72.0
Lj1A778T40 Lonicera japonica HOM05D002380 ORTHO05D008286 9.6e-249 863.6 632 69.3
TAR626G1235 Trochodendron aralioides HOM05D002380 ORTHO05D008286 3.6e-248 861.7 510 84.5
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 1.8e-247 859.4 581 73.0
PGR042G3960 Punica granatum HOM05D002380 ORTHO05D008286 4.5e-246 854.7 582 72.5
AUR62040170 Chenopodium quinoa HOM05D002380 ORTHO05D008286 3.8e-245 851.7 590 71.2
AUR62037919 Chenopodium quinoa HOM05D002380 ORTHO05D008286 4.9e-245 851.3 590 70.5
Aa31LG5G4710 Aethionema arabicum HOM05D002380 ORTHO05D008286 1.9e-244 849.4 586 70.8
Rhsim06G0166100 Rhododendron simsii HOM05D002380 ORTHO05D008286 1.9e-244 849.4 558 75.3
Thhalv10016422m.g Eutrema salsugineum HOM05D002380 ORTHO05D008286 9.3e-244 847.0 580 71.7
Phvul.008G211500 Phaseolus vulgaris HOM05D002380 ORTHO05D008286 9.3e-244 847.0 590 72.0
Sp4g14960 Schrenkiella parvula HOM05D002380 ORTHO05D008286 1.2e-243 846.7 586 70.6
Carub.0004s1397 Capsella rubella HOM05D002380 ORTHO05D008286 2.7e-243 845.5 580 70.9
BcaC01g05900 Brassica carinata HOM05D002380 ORTHO05D008286 3.5e-243 845.1 585 70.3
C03p21270 Brassica napus HOM05D002380 ORTHO05D008286 4.6e-243 844.7 585 70.1
BolC3t14508H Brassica oleracea HOM05D002380 ORTHO05D008286 3.9e-242 841.6 585 70.1
A03p18220 Brassica napus HOM05D002380 ORTHO05D008286 1.1e-241 840.1 588 70.6
BraA03t11082Z Brassica rapa HOM05D002380 ORTHO05D008286 3.3e-241 838.6 588 70.6
CDE04G2212 Ceratophyllum demersum HOM05D002380 ORTHO05D008286 7.4e-241 837.4 582 69.9
CARHR126480 Cardamine hirsuta HOM05D002380 ORTHO05D008286 1.3e-240 836.6 587 69.5
BcaB01g03970 Brassica carinata HOM05D002380 ORTHO05D008286 1.1e-239 833.6 586 69.3
AL4G28040 Arabidopsis lyrata HOM05D002380 ORTHO05D008286 1.3e-237 826.6 538 73.4
THA.LOC104826140 Tarenaya hassleriana HOM05D002380 ORTHO05D008286 4.9e-237 824.7 587 69.3
Os08g0422000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D008286 2.1e-235 819.3 545 71.9
Peaxi162Scf00011g02118 Petunia axillaris HOM05D002380 ORTHO05D008286 2.1e-235 819.3 602 69.1
DCAR_019750 Daucus carota HOM05D002380 ORTHO05D008286 4.6e-235 818.1 551 72.4
ATR0059G008 Amborella trichopoda HOM05D002380 ORTHO05D008286 7.4e-233 810.8 555 69.2
Lalb_Chr04g0249901 Lupinus albus HOM05D002380 ORTHO05D008286 3.8e-229 798.5 499 76.4
Lsat_1_v5_gn_5_123621 Lactuca sativa HOM05D002380 ORTHO05D008286 1.9e-228 796.2 597 67.5
Ca_06119_v3 Cicer arietinum L. HOM05D002380 ORTHO05D008286 7.2e-228 794.3 549 71.9
Psat0s2606g0080 Pisum sativum HOM05D002380 ORTHO05D008286 7.9e-227 790.8 520 75.0
EL10Ac7g16733 Beta vulgaris HOM05D002380 ORTHO05D008286 6.3e-224 781.2 594 67.5
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 2.9e-221 772.3 581 66.4
AUR62044039 Chenopodium quinoa HOM05D002380 ORTHO05D008286 6.5e-221 771.2 590 65.8
Sc21g0001190 Simmondsia chinensis HOM05D002380 ORTHO05D008286 8.5e-221 770.8 486 77.6
MELO3C018839.2 Cucumis melo HOM05D002380 ORTHO05D008286 2.3e-218 762.7 515 73.4
Manes.12G071600 Manihot esculenta HOM05D002380 ORTHO05D008286 1.5e-217 760.0 491 76.2
vmacro12176 Vaccinium macrocarpon HOM05D002380 ORTHO05D008286 2.1e-211 739.6 610 63.9
HPP92_026432 Vanilla planifolia HOM05D002380 ORTHO05D008286 2.2e-208 729.6 472 72.5
Haze_12786 Corylus avellana HOM05D002380 ORTHO05D008286 4.8e-208 728.4 593 64.9
Hma1.2p1_0445F.1_g154530 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 1.8e-207 726.5 538 69.0
Dinv08737 Davidia involucrata HOM05D002380 ORTHO05D008286 4.0e-194 682.2 454 76.9
Pp3c11_22720 Physcomitrium patens HOM05D002380 ORTHO05D008286 4.0e-194 682.2 547 58.3
Aqoxy1G02993 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 8.3e-184 647.9 565 60.4
Mapoly0041s0126 Marchantia polymorpha HOM05D002380 ORTHO05D008286 6.6e-181 638.3 543 54.7
AagrBONN_evm.TU.Sc2ySwM_368.2332 Anthoceros agrestis HOM05D002380 ORTHO05D008286 1.3e-176 624.0 545 56.1
FAN02G0433 Fragaria x ananassa HOM05D002380 ORTHO05D008286 2.2e-160 570.1 564 57.3
Cpa.g.sc132.5 Carica papaya HOM05D002380 ORTHO05D008286 1.4e-159 567.4 383 73.4
Hma1.2p1_0895F.1_g233700 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 1.1e-154 551.2 318 82.7
COL.COLO4_21855 Corchorus olitorius HOM05D002380 ORTHO05D008286 2.4e-154 550.1 335 79.4
PGSC0003DMG400020719 Solanum tuberosum HOM05D002380 ORTHO05D008286 3.9e-149 532.7 308 80.8
SGA_v2.0_scaffold159G37563 Striga asiatica HOM05D002380 ORTHO05D001198 2.1e-147 526.9 573 52.9
Hund20419 Selenicereus undatus HOM05D002380 ORTHO05D008286 2.4e-143 513.5 342 70.8
AT2G32640 Arabidopsis thaliana HOM05D002380 ORTHO05D008286 4.3e-140 502.7 385 64.9
Zm00001eb179140 Zea mays HOM05D002380 ORTHO05D008286 1.3e-139 501.1 445 59.3
Cre06.g264250 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 1.6e-131 474.2 570 43.0
TPR.G26188 Trifolium pratense HOM05D002380 ORTHO05D008286 3.8e-128 463.0 336 69.0
Ah.15g091260 Amaranthus hybridus HOM05D002380 ORTHO05D008286 6.7e-125 452.2 394 60.7
SMO111G0098 Selaginella moellendorffii HOM05D002380 ORTHO05D008286 1.5e-108 397.9 367 53.4
Cre04.g221550 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 5.3e-98 362.8 627 35.1
Cpa.g.sc132.4 Carica papaya HOM05D002380 ORTHO05D008286 9.1e-98 362.1 204 83.3
unitig_62.g23230 Utricularia gibba HOM05D002380 ORTHO05D008286 6.7e-93 345.9 244 67.6
MBI19_g44049_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 2.8e-91 340.5 233 71.7
MBI19_g40900_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 3.0e-61 240.7 140 76.4
SEGI_31657 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 2.9e-59 234.2 160 66.9
SEGI_17941 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 3.3e-47 194.1 164 62.2
COL.COLO4_21854 Corchorus olitorius HOM05D002380 ORTHO05D008286 9.9e-44 182.6 128 68.0
Aqoxy1G02984 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 2.9e-43 181.0 99 83.8
CBR_g8452 Chara braunii HOM05D002380 ORTHO05D008286 7.1e-42 176.4 149 55.0
MBI19_g42463_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 3.8e-35 154.1 185 47.6
Hund20420 Selenicereus undatus HOM05D002380 ORTHO05D010615 3.0e-32 144.4 94 69.1
CBR_g12620 Chara braunii HOM05D005350 ORTHO05D008838 5.3e-29 133.7 100 54.0
SEGI_28059 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 1.0e-24 119.4 69 81.2
LjContig00564g0015808 Lotus japonicus HOM05D002380 ORTHO05D008286 2.0e-20 105.1 62 71.0
Gohir.A07G186850 Gossypium hirsutum HOM05D002380 ORTHO05D026288 3.2e-18 97.8 75 62.7
Actinidia09730 Actinidia chinensis HOM05D002380 ORTHO05D008286 4.2e-18 97.4 111 50.5
CBR_g8454 Chara braunii HOM05D002380 ORTHO05D008286 4.3e-15 87.4 96 41.7
Actinidia09729 Actinidia chinensis HOM05D002380 ORTHO05D026288 1.1e-13 82.8 90 56.7
SEGI_40123 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 1.2e-12 79.3 42 85.7
Lj1P772T14 Lonicera japonica HOM05D002380 ORTHO05D008286 8.4e-11 73.2 83 51.8
Lalb_Chr04g0249911 Lupinus albus HOM05D002380 ORTHO05D026288 5.5e-10 70.5 84 53.6
CAN.G96.10 Capsicum annuum HOM05D002380 ORTHO05D026288 8.7e-08 63.2 39 74.4


User provided reference genes

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