Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.6e-130 469.5 261 100.0
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 8.8e-52 208.0 416 38.2
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.7e-47 193.7 363 41.9
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 1.2e-43 181.0 391 36.1
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 2.6e-43 179.9 402 36.3
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 3.7e-42 176.0 412 35.9
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 2.4e-41 173.3 418 34.7
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 5.4e-41 172.2 389 36.2
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 1.2e-40 171.0 411 34.1
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 4.5e-40 169.1 373 37.8
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 4.5e-40 169.1 373 35.7
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 7.7e-40 168.3 407 36.6
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.0e-39 167.9 380 35.8
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 1.7e-39 167.2 393 39.9
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.7e-39 167.2 377 36.6
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 1.7e-39 167.2 387 35.1
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 2.9e-39 166.4 401 38.9
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.9e-39 166.4 361 37.1
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.9e-39 166.4 380 35.5
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 5.0e-39 165.6 414 35.0
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 6.6e-39 165.2 398 35.4
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 8.6e-39 164.9 398 35.4
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 1.1e-38 164.5 399 34.1
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 1.5e-38 164.1 392 38.0
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 1.5e-38 164.1 385 36.1
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 1.9e-38 163.7 411 33.6
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 4.3e-38 162.5 418 33.7
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 7.3e-38 161.8 409 34.2
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 7.3e-38 161.8 398 34.7
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 2.1e-37 160.2 395 39.5
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 2.1e-37 160.2 413 33.7
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 3.6e-37 159.5 324 38.6
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 4.7e-37 159.1 414 34.8
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 8.0e-37 158.3 385 33.2
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 1.0e-36 157.9 410 33.4
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 1.4e-36 157.5 445 31.5
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 1.8e-36 157.1 387 34.6
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 2.3e-36 156.8 432 31.9
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 5.2e-36 155.6 409 37.7
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 8.9e-36 154.8 449 32.1
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 1.2e-35 154.5 400 33.8
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 1.2e-35 154.5 295 39.3
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 5.7e-35 152.1 394 35.0
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 9.8e-35 151.4 412 33.3
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 9.8e-35 151.4 436 31.7
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 9.8e-35 151.4 405 31.9
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 9.8e-35 151.4 394 33.2
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 9.8e-35 151.4 388 34.0
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 1.3e-34 151.0 406 34.0
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 1.3e-34 151.0 392 32.1
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 1.3e-34 151.0 423 32.4
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 1.7e-34 150.6 456 31.1
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 1.7e-34 150.6 417 32.9
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 1.7e-34 150.6 386 33.2
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 3.7e-34 149.4 369 34.1
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 4.9e-34 149.1 389 33.2
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 6.4e-34 148.7 418 35.2
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 1.8e-33 147.1 444 31.5
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 2.4e-33 146.7 395 33.4
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 4.1e-33 146.0 385 34.3
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 4.1e-33 146.0 401 32.9
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 4.1e-33 146.0 406 32.8
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 5.4e-33 145.6 444 30.6
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 9.2e-33 144.8 388 33.2
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 1.2e-32 144.4 390 33.6
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 1.6e-32 144.1 406 33.3
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 2.7e-32 143.3 390 32.1
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 4.6e-32 142.5 410 32.0
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 4.6e-32 142.5 396 35.6
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.0e-31 141.4 403 33.0
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.3e-31 141.0 444 30.0
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.3e-31 140.2 312 38.1
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 3.0e-31 139.8 388 33.2
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 3.0e-31 139.8 413 32.2
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 3.0e-31 139.8 440 30.7
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 3.9e-31 139.4 327 34.3
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 5.0e-31 139.0 428 31.5
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 6.6e-31 138.7 424 30.4
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.1e-30 137.9 410 32.2
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 4.3e-30 136.0 389 33.9
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 5.6e-30 135.6 446 30.5
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 5.6e-30 135.6 446 30.5
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 9.5e-30 134.8 418 31.8
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 1.2e-29 134.4 394 31.5
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 1.2e-29 134.4 405 33.1
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 2.8e-29 133.3 388 33.2
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 3.6e-29 132.9 386 32.9
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 3.6e-29 132.9 469 29.4
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 4.7e-29 132.5 386 32.4
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 6.2e-29 132.1 290 36.6
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 8.0e-29 131.7 394 31.7
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 8.0e-29 131.7 393 33.8
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 8.0e-29 131.7 310 37.1
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 8.0e-29 131.7 468 29.7
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 1.0e-28 131.3 387 32.8
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 1.4e-28 131.0 390 32.8
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 1.8e-28 130.6 470 28.7
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.3e-28 130.2 445 29.4
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 3.1e-28 129.8 385 33.0
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 4.0e-28 129.4 386 32.4
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 4.0e-28 129.4 440 30.7
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 6.8e-28 128.6 388 31.2
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.5e-27 127.5 233 41.2
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 1.5e-27 127.5 477 29.6
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.6e-27 126.7 206 45.1
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 4.4e-27 125.9 454 28.4
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 2.2e-26 123.6 325 33.5
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 3.7e-26 122.9 400 33.0
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 3.7e-26 122.9 411 31.1
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 6.4e-26 122.1 476 27.5
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 4.1e-25 119.4 420 30.2
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 5.4e-25 119.0 461 29.1
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 7.8e-24 115.2 289 34.6
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 1.0e-23 114.8 376 31.6
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 2.3e-23 113.6 412 29.6
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 6.6e-23 112.1 162 43.8
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 3.4e-19 99.8 104 55.8
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 9.8e-19 98.2 285 31.2
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.7e-18 97.4 246 35.0
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 2.2e-18 97.1 249 35.3
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 2.9e-18 96.7 162 42.6
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 1.6e-16 90.9 142 42.3
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 1.6e-16 90.9 304 31.6
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 2.7e-16 90.1 299 30.1
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 4.6e-16 89.4 142 41.5
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 6.0e-16 89.0 49 85.7
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 1.0e-15 88.2 423 27.4
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 5.1e-15 85.9 52 82.7
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 3.3e-14 83.2 116 44.8
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 6.2e-13 79.0 49 73.5
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 1.1e-12 78.2 467 24.8
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 5.4e-09 65.9 44 68.2
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 5.4e-09 65.9 44 68.2
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 7.8e-08 62.0 38 71.1
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 1.5e-06 57.8 316 25.9


User provided reference genes

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