Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 5.2e-205 717.6 394 100.0
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 2.3e-176 622.5 394 86.3
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 1.2e-172 610.1 394 85.0
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 3.9e-168 595.1 395 84.6
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 4.7e-166 588.2 394 82.2
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 6.8e-165 584.3 394 82.5
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 1.5e-164 583.2 394 82.2
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 2.0e-164 582.8 394 81.5
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 2.4e-162 575.9 394 81.0
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 3.2e-162 575.5 394 80.7
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 3.5e-161 572.0 394 78.9
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 6.0e-161 571.2 394 81.0
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 1.3e-160 570.1 394 78.4
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 1.7e-160 569.7 394 79.2
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 1.7e-160 569.7 394 78.9
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 2.3e-160 569.3 394 79.9
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 2.3e-160 569.3 394 79.2
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 3.9e-160 568.5 394 79.7
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 6.6e-160 567.8 394 80.2
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 8.6e-160 567.4 394 81.0
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 1.9e-159 566.2 394 78.7
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 3.3e-159 565.5 410 78.3
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 9.6e-159 563.9 394 79.9
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 6.2e-158 561.2 394 78.4
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 6.2e-158 561.2 394 79.4
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 6.2e-158 561.2 394 78.2
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 6.2e-158 561.2 394 78.2
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 6.2e-158 561.2 394 78.4
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 1.8e-157 559.7 394 79.2
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 3.1e-157 558.9 392 79.3
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 3.1e-157 558.9 394 77.9
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 4.0e-157 558.5 394 78.7
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 5.2e-157 558.1 394 78.7
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 6.9e-157 557.8 394 78.4
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 9.0e-157 557.4 394 77.9
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 1.2e-156 557.0 394 77.2
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 3.4e-156 555.4 394 76.1
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 7.6e-156 554.3 394 77.2
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 7.6e-156 554.3 394 77.2
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.7e-155 553.1 394 77.4
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 1.7e-155 553.1 394 77.9
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 2.9e-155 552.4 394 77.9
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 2.9e-155 552.4 395 78.5
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 4.2e-154 548.5 394 72.8
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 5.4e-154 548.1 394 76.4
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 1.6e-153 546.6 438 72.4
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 2.1e-153 546.2 404 77.0
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 2.1e-153 546.2 394 77.7
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 6.0e-153 544.7 396 75.3
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 7.8e-153 544.3 395 76.7
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 1.1e-151 540.4 394 74.9
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 2.5e-151 539.3 394 73.9
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 1.6e-150 536.6 397 76.3
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 2.8e-150 535.8 395 74.9
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 4.8e-150 535.0 417 73.9
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 1.1e-149 533.9 392 69.4
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 1.8e-149 533.1 394 68.5
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 2.4e-149 532.7 392 69.4
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 6.9e-149 531.2 392 68.9
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 2.0e-148 529.6 394 71.3
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 4.5e-148 528.5 394 75.9
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 9.9e-148 527.3 392 68.6
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 3.8e-147 525.4 378 77.0
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 3.8e-147 525.4 392 68.1
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 4.9e-147 525.0 394 68.8
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 6.4e-147 524.6 370 79.7
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 1.6e-145 520.0 397 77.1
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 2.7e-145 519.2 397 77.1
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 3.5e-145 518.8 370 79.5
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 2.3e-144 516.2 392 68.6
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 3.0e-144 515.8 393 75.3
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 3.0e-144 515.8 394 75.6
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 5.1e-144 515.0 394 74.6
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 8.7e-144 514.2 395 65.3
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 1.5e-143 513.5 394 74.1
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 3.3e-143 512.3 394 75.4
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 9.6e-143 510.8 392 67.3
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 4.8e-142 508.4 392 67.1
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 3.1e-141 505.8 392 66.6
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 3.1e-141 505.8 392 66.6
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 3.1e-141 505.8 397 66.8
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 1.3e-139 500.4 394 73.4
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 1.9e-138 496.5 410 70.7
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 4.2e-138 495.4 395 71.1
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 4.2e-138 495.4 394 73.9
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 1.6e-137 493.4 394 72.8
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 3.5e-137 492.3 426 68.3
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 3.0e-136 489.2 376 67.0
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 1.1e-135 487.3 398 70.9
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 4.3e-135 485.3 398 71.9
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 5.8e-132 474.9 358 70.4
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 4.6e-129 465.3 407 62.7
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 5.7e-127 458.4 387 70.3
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 4.8e-126 455.3 395 61.3
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 8.2e-126 454.5 394 70.1
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 1.0e-120 437.6 372 70.2
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 1.7e-115 420.2 394 56.6
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 1.4e-106 390.6 346 69.1
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 1.9e-106 390.2 379 56.7
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 1.5e-103 380.6 287 75.6
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 1.7e-102 377.1 392 54.3
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 1.3e-99 367.5 397 55.7
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 1.2e-95 354.4 396 50.0
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 5.7e-95 352.1 396 52.0
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 9.4e-90 334.7 328 65.9
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 1.8e-85 320.5 246 64.6
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 6.1e-81 305.4 294 56.5
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 4.5e-76 289.3 378 47.1
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 9.8e-71 271.6 390 53.1
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 3.7e-70 269.6 302 52.6
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 1.9e-61 240.7 182 63.2
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 4.1e-61 239.6 182 63.2
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 5.6e-58 229.2 539 32.7
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 2.0e-55 220.7 292 46.9
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 2.5e-50 203.8 416 33.2
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 2.5e-50 203.8 122 83.6
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 8.1e-49 198.7 151 72.8
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 2.4e-45 187.2 165 58.8
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 3.5e-44 183.3 125 73.6
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 3.0e-43 180.3 407 33.4
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 3.9e-43 179.9 205 51.2
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 6.2e-41 172.6 395 31.1
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 1.8e-40 171.0 165 52.7
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 3.9e-35 153.3 89 82.0
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 1.5e-34 151.4 128 59.4
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 1.5e-31 141.4 71 87.3
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 7.1e-29 132.5 125 63.2
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 2.1e-28 131.0 137 50.4
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 4.6e-28 129.8 136 50.0
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 2.3e-27 127.5 88 73.9
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.9e-26 124.4 88 69.3
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 4.3e-26 123.2 150 44.0
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 4.3e-26 123.2 71 84.5
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 1.6e-25 121.3 111 56.8
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 2.6e-23 114.0 148 59.5
Psat3g057720 Pisum sativum HOM05D004899 ORTHO05D006580 3.7e-17 93.6 50 76.0
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 1.1e-16 92.0 112 45.5
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 1.8e-16 91.3 80 62.5
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.3e-14 85.1 48 68.8
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 1.8e-11 74.7 51 72.5
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 2.3e-11 74.3 46 80.4
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 2.2e-09 67.8 44 75.0
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 3.7e-09 67.0 41 73.2
Haze_02280 Corylus avellana HOM05D000013 ORTHO05D000689 6.3e-09 66.2 35 88.6
MBI14_g47597_MAGBIO Magnolia biondii HOM05D000572 ORTHO05D002399 8.2e-09 65.9 50 72.0
FAN05G0601 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.8e-08 64.7 77 41.6
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 5.3e-08 63.2 38 78.9


User provided reference genes

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