Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02873 Nelumbo nucifera HOM05D000081 ORTHO05D018415 1.4e-87 326.2 167 100.0
Nn2g10594 Nelumbo nucifera HOM05D000081 ORTHO05D000036 1.1e-82 310.1 166 95.8
Nn2g10599 Nelumbo nucifera HOM05D000081 ORTHO05D000036 1.1e-82 310.1 166 95.8
Nn2g12952 Nelumbo nucifera HOM05D000081 ORTHO05D000036 7.4e-60 234.2 172 74.4
TAR623G0836 Trochodendron aralioides HOM05D000081 ORTHO05D000036 1.1e-52 210.3 174 67.2
TAR369G0078 Trochodendron aralioides HOM05D000081 ORTHO05D000036 9.3e-47 190.7 170 64.1
Haze_20674 Corylus avellana HOM05D000081 ORTHO05D000036 8.7e-45 184.1 174 59.8
Cfa017484 Carpinus fangiana HOM05D000081 ORTHO05D000036 7.4e-44 181.0 174 58.6
GSVIVG01025562001 Vitis vinifera HOM05D000081 ORTHO05D000036 1.8e-42 176.4 174 59.2
QL07p045657 Quercus lobata HOM05D000081 ORTHO05D000036 1.1e-39 167.2 174 56.9
MD12G1128800 Malus domestica HOM05D000081 ORTHO05D000036 1.4e-39 166.8 172 55.8
Dinv35691 Davidia involucrata HOM05D000081 ORTHO05D000036 1.9e-39 166.4 174 55.7
Prupe.6G244300 Prunus persica HOM05D000081 ORTHO05D000036 2.5e-39 166.0 176 55.7
CiPaw.10G138200 Carya illinoinensis HOM05D000081 ORTHO05D000036 5.5e-39 164.9 174 55.2
MD04G1113100 Malus domestica HOM05D000081 ORTHO05D000036 5.5e-39 164.9 172 54.7
Duzib106G0900 Durio zibethinus HOM05D000081 ORTHO05D000036 7.2e-39 164.5 174 55.7
Thecc.05G051600 Theobroma cacao HOM05D000081 ORTHO05D000036 9.3e-39 164.1 174 55.2
Gohir.A04G077300 Gossypium hirsutum HOM05D000081 ORTHO05D000036 1.6e-38 163.3 174 56.3
Duzib093G1232 Durio zibethinus HOM05D000081 ORTHO05D000036 2.7e-38 162.5 174 55.7
FAN02G4192 Fragaria x ananassa HOM05D000081 ORTHO05D000036 1.4e-37 160.2 127 66.1
FAN09G0637 Fragaria x ananassa HOM05D000081 ORTHO05D000036 3.0e-37 159.1 127 65.4
vmacro08686 Vaccinium macrocarpon HOM05D000081 ORTHO05D000036 3.9e-37 158.7 175 56.0
FvH4_6g15050 Fragaria vesca HOM05D000081 ORTHO05D000036 5.1e-37 158.3 127 65.4
Gohir.D04G116400 Gossypium hirsutum HOM05D000081 ORTHO05D000036 5.1e-37 158.3 174 55.2
Sabra16G0090800 Salix brachista HOM05D000081 ORTHO05D000036 6.7e-37 157.9 159 57.2
Gorai.009G421200 Gossypium raimondii HOM05D000081 ORTHO05D000036 1.1e-36 157.1 174 54.6
CSS0009754 Camellia sinensis var. sinensis HOM05D000081 ORTHO05D000036 1.9e-36 156.4 175 57.1
CSS0049199 Camellia sinensis var. sinensis HOM05D000081 ORTHO05D000036 1.9e-36 156.4 177 55.9
FAN14G0831 Fragaria x ananassa HOM05D000081 ORTHO05D000036 1.9e-36 156.4 127 64.6
FAN14G1735 Fragaria x ananassa HOM05D000081 ORTHO05D000036 1.9e-36 156.4 127 64.6
Eucgr.A01195 Eucalyptus grandis HOM05D000081 ORTHO05D000036 2.5e-36 156.0 160 55.6
Potri.016G083600 Populus trichocarpa HOM05D000081 ORTHO05D000036 3.7e-35 152.1 159 55.3
Actinidia19724 Actinidia chinensis HOM05D000081 ORTHO05D000036 6.3e-35 151.4 175 54.3
FAN05G5402 Fragaria x ananassa HOM05D000081 ORTHO05D000036 6.3e-35 151.4 127 63.0
MBI14_g17784_MAGBIO Magnolia biondii HOM05D000081 ORTHO05D000036 8.2e-35 151.0 171 56.7
CSS0016070 Camellia sinensis var. sinensis HOM05D000081 ORTHO05D000036 2.4e-34 149.4 177 53.1
RcHm_v2.0_Chr3g0468221 Rosa chinensis HOM05D000081 ORTHO05D000036 2.4e-34 149.4 172 53.5
COL.COLO4_10287 Corchorus olitorius HOM05D000081 ORTHO05D000036 6.9e-34 147.9 177 50.8
CiPaw.09G184100 Carya illinoinensis HOM05D000081 ORTHO05D000036 1.2e-33 147.1 142 59.9
Potri.006G133200 Populus trichocarpa HOM05D000081 ORTHO05D000036 1.2e-33 147.1 162 52.5
PGR004G2542 Punica granatum HOM05D000081 ORTHO05D000036 6.5e-32 141.4 178 49.4
Cpa.g.sc114.62 Carica papaya HOM05D000081 ORTHO05D000036 1.1e-31 140.6 164 48.8
Ciclev10011660m.g Citrus clementina HOM05D000081 ORTHO05D000036 1.4e-31 140.2 172 51.2
Glyma.19G177400 Glycine max HOM05D000081 ORTHO05D000036 1.9e-31 139.8 171 48.5
Lj1g0010374 Lotus japonicus HOM05D000081 ORTHO05D000036 1.9e-31 139.8 183 47.0
Lalb_Chr25g0289301 Lupinus albus HOM05D000081 ORTHO05D000036 4.2e-31 138.7 126 57.1
Aqoxy4G03140 Aquilegia oxysepala HOM05D000081 ORTHO05D000036 7.2e-31 137.9 173 49.7
Sc20g0004200 Simmondsia chinensis HOM05D000081 ORTHO05D000036 9.4e-31 137.5 174 50.6
Hund11796 Selenicereus undatus HOM05D000081 ORTHO05D000036 1.6e-30 136.7 170 50.6
Atru.chr8.2526 Acer truncatum HOM05D000081 ORTHO05D000036 2.7e-30 136.0 170 51.2
ATR0594G001 Amborella trichopoda HOM05D000081 ORTHO05D000036 6.1e-30 134.8 160 52.5
Phvul.001G173700 Phaseolus vulgaris HOM05D000081 ORTHO05D000036 1.4e-29 133.7 175 50.3
Sabra06G0104700 Salix brachista HOM05D000081 ORTHO05D000036 1.4e-29 133.7 132 58.3
CANSAT80G0545 Cannabis sativa HOM05D000081 ORTHO05D000036 3.9e-29 132.1 173 50.3
Cc06_g03470 Coffea canephora HOM05D000081 ORTHO05D000036 3.9e-29 132.1 173 45.7
Eucgr.K03196 Eucalyptus grandis HOM05D000081 ORTHO05D000036 8.8e-29 131.0 171 49.7
Glyma.03G176600 Glycine max HOM05D000081 ORTHO05D000036 1.1e-28 130.6 157 47.1
Medtr7g100510 Medicago truncatula HOM05D000081 ORTHO05D000036 1.1e-28 130.6 165 45.5
VMungo1383G2699 Vigna mungo HOM05D000081 ORTHO05D000036 2.0e-28 129.8 174 47.7
Ca_08815_v3 Cicer arietinum L. HOM05D000081 ORTHO05D000036 7.4e-28 127.9 171 45.0
TPR.G36906 Trifolium pratense HOM05D000081 ORTHO05D000036 9.7e-28 127.5 171 43.3
TWI53G2124 Tripterygium wilfordii HOM05D000081 ORTHO05D000036 2.2e-27 126.3 173 48.0
arahy.Tifrunner.gnm1.ann1.B1IT3E Arachis hypogaea HOM05D000081 ORTHO05D000036 8.2e-27 124.4 128 53.9
Nn2g10598 Nelumbo nucifera HOM05D000081 ORTHO05D018415 5.3e-26 121.7 64 95.3
arahy.Tifrunner.gnm1.ann1.431KH3 Arachis hypogaea HOM05D000081 ORTHO05D000036 6.9e-26 121.3 175 44.6
Psat3g046040 Pisum sativum HOM05D000081 ORTHO05D000036 6.9e-26 121.3 174 43.7
ClCG10G020670 Citrullus lanatus HOM05D000081 ORTHO05D000036 2.5e-23 112.8 152 45.4
TWI74G1410 Tripterygium wilfordii HOM05D000081 ORTHO05D000036 2.5e-23 112.8 159 46.5
Actinidia13114 Actinidia chinensis HOM05D000081 ORTHO05D000036 1.6e-22 110.2 152 50.0
Peaxi162Scf00472g00077 Petunia axillaris HOM05D000081 ORTHO05D000036 6.1e-22 108.2 119 50.4
AUR62017414 Chenopodium quinoa HOM05D000081 ORTHO05D000036 8.0e-22 107.8 180 41.1
CsaV3_3G035430 Cucumis sativus L. HOM05D000081 ORTHO05D000036 8.0e-22 107.8 123 48.8
Manes.08G001500 Manihot esculenta HOM05D000081 ORTHO05D000036 1.4e-21 107.1 174 39.1
HanXRQChr07g0195721 Helianthus annuus HOM05D000081 ORTHO05D000036 1.8e-21 106.7 128 50.0
SalBow3G4084 Salvia bowleyana HOM05D000081 ORTHO05D000036 2.3e-21 106.3 164 41.5
Oeu035157.1 Olea europaea HOM05D000081 ORTHO05D000036 3.9e-21 105.5 128 45.3
Ah.03g136400 Amaranthus hybridus HOM05D000081 ORTHO05D000036 1.5e-20 103.6 171 45.6
Sed0011186 Sechium edule HOM05D000081 ORTHO05D000036 1.5e-20 103.6 166 43.4
THA.LOC104806519 Tarenaya hassleriana HOM05D000081 ORTHO05D000036 2.6e-20 102.8 172 42.4
SGA_v2.0_scaffold75G24896 Striga asiatica HOM05D000081 ORTHO05D000036 3.3e-20 102.4 120 49.2
Lsat_1_v5_gn_2_110080 Lactuca sativa HOM05D000081 ORTHO05D000036 7.4e-20 101.3 137 48.2
Lj2C105G12 Lonicera japonica HOM05D000081 ORTHO05D000036 1.7e-19 100.1 175 40.6
MSTRG.5710 Avicennia marina HOM05D000081 ORTHO05D000036 2.8e-19 99.4 164 42.7
Nitab4.5_0000202g0490 Nicotiana tabacum HOM05D000081 ORTHO05D000036 2.8e-19 99.4 164 39.0
PGSC0003DMG400010987 Solanum tuberosum HOM05D000081 ORTHO05D000036 6.3e-19 98.2 163 38.7
Thhalv10016692m.g Eutrema salsugineum HOM05D000081 ORTHO05D000036 8.2e-19 97.8 159 43.4
CAN.G1450.4 Capsicum annuum HOM05D000081 ORTHO05D000036 1.4e-18 97.1 146 39.7
Sopen10g033820 Solanum pennellii HOM05D000081 ORTHO05D000036 1.8e-18 96.7 119 46.2
CAN.G1047.2 Capsicum annuum HOM05D000081 ORTHO05D000036 2.4e-18 96.3 146 38.4
MELO3C009302.2 Cucumis melo HOM05D000081 ORTHO05D000036 3.1e-18 95.9 108 52.8
Nitab4.5_0003820g0020 Nicotiana tabacum HOM05D000081 ORTHO05D000036 4.1e-18 95.5 166 37.3
PGR004G0974 Punica granatum HOM05D000081 ORTHO05D000036 7.0e-18 94.7 125 44.0
EL10Ac6g13397 Beta vulgaris HOM05D000081 ORTHO05D000036 9.1e-18 94.4 185 41.1
Aa31LG5G22590 Aethionema arabicum HOM05D000081 ORTHO05D000036 2.6e-17 92.8 156 44.2
THA.LOC104823442 Tarenaya hassleriana HOM05D000081 ORTHO05D000036 3.5e-17 92.4 127 44.9
AUR62037832 Chenopodium quinoa HOM05D001338 ORTHO05D001239 4.5e-17 92.0 119 50.4
CARHR132330 Cardamine hirsuta HOM05D000081 ORTHO05D000036 7.7e-17 91.3 166 43.4
Sp4g19580 Schrenkiella parvula HOM05D000081 ORTHO05D000036 1.3e-16 90.5 116 48.3
DCAR_014957 Daucus carota HOM05D000134 ORTHO05D000168 1.7e-16 90.1 158 41.1
C03p24190 Brassica napus HOM05D000081 ORTHO05D000036 2.9e-16 89.4 126 49.2
BcaC02g11845 Brassica carinata HOM05D000081 ORTHO05D000036 5.0e-16 88.6 116 47.4
A03p20580 Brassica napus HOM05D000081 ORTHO05D000036 5.0e-16 88.6 128 50.0
BraA03t11301Z Brassica rapa HOM05D000081 ORTHO05D000036 5.0e-16 88.6 128 50.0
PSO210G0691 Papaver somniferum HOM05D000081 ORTHO05D000036 5.0e-16 88.6 168 41.1
BcaB01g03785 Brassica carinata HOM05D000081 ORTHO05D000036 1.1e-15 87.4 161 45.3
BcaB02g09296 Brassica carinata HOM05D000081 ORTHO05D000036 3.2e-15 85.9 162 40.7
AL4G33640 Arabidopsis lyrata HOM05D000081 ORTHO05D000036 9.4e-15 84.3 164 43.3
C04p10740 Brassica napus HOM05D000081 ORTHO05D000036 9.4e-15 84.3 116 46.6
BolC3t14812H Brassica oleracea HOM05D000081 ORTHO05D000036 9.4e-15 84.3 128 48.4
BolC4t22668H Brassica oleracea HOM05D000081 ORTHO05D000036 9.4e-15 84.3 116 46.6
AT2G37260 Arabidopsis thaliana HOM05D000081 ORTHO05D000036 1.2e-14 84.0 166 45.2
SEGI_01322 Sequoiadendron giganteum HOM05D000081 ORTHO05D000036 3.6e-14 82.4 196 35.2
Carub.0004s1917 Capsella rubella HOM05D000081 ORTHO05D000036 8.0e-14 81.3 155 41.9
BraA05t19833Z Brassica rapa HOM05D000081 ORTHO05D000036 2.3e-13 79.7 117 46.2
A05p08650 Brassica napus HOM05D000081 ORTHO05D000036 5.2e-13 78.6 117 45.3
arahy.Tifrunner.gnm1.ann1.LTD1CE Arachis hypogaea HOM05D000081 ORTHO05D018415 2.6e-12 76.3 60 65.0
PSO210G7194 Papaver somniferum HOM05D000081 ORTHO05D000036 4.4e-12 75.5 74 55.4
ECA238G1665 Erigeron canadensis HOM05D000081 ORTHO05D000036 5.7e-12 75.1 134 41.0
arahy.Tifrunner.gnm1.ann1.PU6J43 Arachis hypogaea HOM05D000081 ORTHO05D018415 8.2e-11 71.2 60 61.7
arahy.Tifrunner.gnm1.ann1.4BXE5F Arachis hypogaea HOM05D000081 ORTHO05D018415 1.1e-10 70.9 60 60.0
CDE04G1554 Ceratophyllum demersum HOM05D000081 ORTHO05D000036 2.4e-10 69.7 113 39.8
arahy.Tifrunner.gnm1.ann1.65IL12 Arachis hypogaea HOM05D000081 ORTHO05D018415 3.1e-10 69.3 60 60.0
arahy.Tifrunner.gnm1.ann1.XTGM9Z Arachis hypogaea HOM05D006672 ORTHO05D007769 1.6e-09 67.0 57 57.9
CDE07G0108 Ceratophyllum demersum HOM05D000081 ORTHO05D000036 2.0e-09 66.6 112 40.2
Aqoxy4G03135 Aquilegia oxysepala HOM05D000081 ORTHO05D018415 2.7e-09 66.2 53 64.2
Solyc10g084380.1 Solanum lycopersicum HOM05D000081 ORTHO05D000036 7.2e-07 58.2 79 46.8
CDE02G0281 Ceratophyllum demersum HOM05D000081 ORTHO05D000036 2.7e-06 56.2 170 32.9
arahy.Tifrunner.gnm1.ann1.EQ3UW8 Arachis hypogaea HOM05D000081 ORTHO05D018415 3.6e-06 55.8 60 55.0


User provided reference genes

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