Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02593 Nelumbo nucifera HOM05D007216 ORTHO05D009261 1.5e-130 469.5 247 100.0
Nn3g19525 Nelumbo nucifera HOM05D007216 ORTHO05D009261 6.6e-65 251.5 236 62.3
TAR365G0907 Trochodendron aralioides HOM05D007216 ORTHO05D009261 7.8e-50 201.4 237 54.4
TAR636G2640 Trochodendron aralioides HOM05D007216 ORTHO05D009261 5.1e-41 172.2 209 51.7
QL06p015626 Quercus lobata HOM05D007216 ORTHO05D009261 9.0e-38 161.4 245 46.1
Thecc.04G245800 Theobroma cacao HOM05D007216 ORTHO05D009261 1.4e-35 154.1 235 42.1
Haze_11299 Corylus avellana HOM05D007216 ORTHO05D009261 3.5e-34 149.4 239 43.9
CSS0019068 Camellia sinensis var. sinensis HOM05D007216 ORTHO05D009261 4.6e-34 149.1 180 51.1
RcHm_v2.0_Chr4g0390311 Rosa chinensis HOM05D007216 ORTHO05D009261 1.0e-33 147.9 231 46.3
Haze_11297 Corylus avellana HOM05D007216 ORTHO05D009261 1.3e-33 147.5 239 43.5
Prupe.1G030500 Prunus persica HOM05D007216 ORTHO05D009261 1.7e-33 147.1 233 44.2
Duzib052G0756 Durio zibethinus HOM05D007216 ORTHO05D009261 2.3e-33 146.7 212 42.9
Cfa008380 Carpinus fangiana HOM05D007216 ORTHO05D009261 4.3e-32 142.5 222 42.3
PGR031G3332 Punica granatum HOM05D007216 ORTHO05D009261 4.3e-32 142.5 205 45.9
Sabra10G0031800 Salix brachista HOM05D007216 ORTHO05D009261 2.1e-31 140.2 220 40.5
ATR0665G548 Amborella trichopoda HOM05D007216 ORTHO05D009261 2.8e-31 139.8 184 46.7
Ciclev10005777m.g Citrus clementina HOM05D007216 ORTHO05D009261 6.2e-31 138.7 225 43.6
Potri.008G161800 Populus trichocarpa HOM05D007216 ORTHO05D009261 6.2e-31 138.7 201 43.8
QL06p015621 Quercus lobata HOM05D007216 ORTHO05D009261 1.1e-30 137.9 218 44.0
Duzib151G0820 Durio zibethinus HOM05D007216 ORTHO05D009261 1.4e-30 137.5 181 46.4
CiPaw.02G116600 Carya illinoinensis HOM05D007216 ORTHO05D009261 2.4e-30 136.7 243 42.0
MD13G1206900 Malus domestica HOM05D007216 ORTHO05D009261 3.1e-30 136.3 231 42.9
Duzib151G0028 Durio zibethinus HOM05D007216 ORTHO05D009261 5.3e-30 135.6 181 45.9
FvH4_4g02610 Fragaria vesca HOM05D007216 ORTHO05D009261 5.3e-30 135.6 234 41.5
CiPaw.01G190600 Carya illinoinensis HOM05D007216 ORTHO05D009261 1.2e-29 134.4 239 42.7
Potri.010G077000 Populus trichocarpa HOM05D007216 ORTHO05D009261 1.2e-29 134.4 219 40.2
Atru.chr4.2233 Acer truncatum HOM05D007216 ORTHO05D009261 1.5e-29 134.0 230 41.7
Rhsim02G0032900 Rhododendron simsii HOM05D007216 ORTHO05D009261 3.4e-29 132.9 184 44.0
MD16G1208400 Malus domestica HOM05D007216 ORTHO05D009261 5.8e-29 132.1 221 43.0
Eucgr.H00196 Eucalyptus grandis HOM05D007216 ORTHO05D009261 7.6e-29 131.7 249 39.0
Solyc09g083360.3 Solanum lycopersicum HOM05D007216 ORTHO05D009261 1.3e-28 131.0 230 39.1
Actinidia05467 Actinidia chinensis HOM05D007216 ORTHO05D009261 1.7e-28 130.6 213 43.2
COL.COLO4_15786 Corchorus olitorius HOM05D007216 ORTHO05D009261 1.1e-27 127.9 188 45.2
Gorai.006G246400 Gossypium raimondii HOM05D007216 ORTHO05D009261 1.1e-27 127.9 201 41.8
Actinidia08446 Actinidia chinensis HOM05D007216 ORTHO05D009261 1.4e-27 127.5 235 41.3
Sabra08G0123600 Salix brachista HOM05D007216 ORTHO05D009261 2.4e-27 126.7 193 43.5
Cpa.g.sc58.45 Carica papaya HOM05D007216 ORTHO05D009261 3.2e-27 126.3 220 38.6
Sopen09g032280 Solanum pennellii HOM05D007216 ORTHO05D009261 4.2e-27 125.9 229 38.9
Eucgr.J01563 Eucalyptus grandis HOM05D007216 ORTHO05D009261 7.1e-27 125.2 191 41.4
Gohir.D09G224900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 7.1e-27 125.2 176 44.9
BraA09t37658Z Brassica rapa HOM05D007216 ORTHO05D009261 1.2e-26 124.4 213 39.9
FAN12G1817 Fragaria x ananassa HOM05D007216 ORTHO05D009261 2.1e-26 123.6 213 41.3
BcaB07g31004 Brassica carinata HOM05D007216 ORTHO05D009261 4.6e-26 122.5 209 40.7
Gohir.A09G222900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 4.6e-26 122.5 225 37.3
Duzib212G0514 Durio zibethinus HOM05D007216 ORTHO05D009261 7.9e-26 121.7 157 45.9
Oeu008788.2 Olea europaea HOM05D007216 ORTHO05D009261 6.7e-25 118.6 205 42.0
Manes.03G169100 Manihot esculenta HOM05D007216 ORTHO05D009261 8.7e-25 118.2 222 37.8
Sed0021571 Sechium edule HOM05D007216 ORTHO05D009261 8.7e-25 118.2 204 39.7
BcaC04g21907 Brassica carinata HOM05D007216 ORTHO05D009261 1.5e-24 117.5 213 39.0
Cc03_g04820 Coffea canephora HOM05D007216 ORTHO05D009261 1.5e-24 117.5 240 41.2
BcaC06g31685 Brassica carinata HOM05D007216 ORTHO05D009261 1.9e-24 117.1 209 38.3
DCAR_027276 Daucus carota HOM05D007216 ORTHO05D009261 3.3e-24 116.3 227 37.4
A09p20520 Brassica napus HOM05D007216 ORTHO05D009261 5.6e-24 115.5 218 37.6
ClCG06G006720 Citrullus lanatus HOM05D007216 ORTHO05D009261 5.6e-24 115.5 207 39.6
THA.LOC104827376 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 5.6e-24 115.5 225 39.1
AL390U10010 Arabidopsis lyrata HOM05D007216 ORTHO05D009261 1.3e-23 114.4 213 38.0
GSVIVG01018111001 Vitis vinifera HOM05D007216 ORTHO05D009261 1.6e-23 114.0 178 43.8
Dinv29914 Davidia involucrata HOM05D007216 ORTHO05D009261 2.8e-23 113.2 153 45.1
Thhalv10003353m.g Eutrema salsugineum HOM05D007216 ORTHO05D009261 2.8e-23 113.2 206 38.8
A06p47770 Brassica napus HOM05D007216 ORTHO05D009261 8.1e-23 111.7 211 38.4
MELO3C026778.2 Cucumis melo HOM05D007216 ORTHO05D009261 1.4e-22 110.9 190 40.5
Gorai.005G046700 Gossypium raimondii HOM05D007216 ORTHO05D009261 1.8e-22 110.5 177 42.9
Gohir.D02G042400 Gossypium hirsutum HOM05D007216 ORTHO05D009261 3.1e-22 109.8 177 42.9
CsaV3_2G013060 Cucumis sativus L. HOM05D007216 ORTHO05D009261 5.3e-22 109.0 190 40.5
Medtr1g040435 Medicago truncatula HOM05D007216 ORTHO05D009261 5.3e-22 109.0 217 38.2
Sed0000846 Sechium edule HOM05D007216 ORTHO05D009261 5.3e-22 109.0 199 37.7
BcaC06g34638 Brassica carinata HOM05D007216 ORTHO05D009261 1.2e-21 107.8 209 38.3
C07p26230 Brassica napus HOM05D007216 ORTHO05D009261 1.2e-21 107.8 209 38.3
BolC7t43151H Brassica oleracea HOM05D007216 ORTHO05D009261 1.2e-21 107.8 209 38.3
Carub.0008s0499 Capsella rubella HOM05D007216 ORTHO05D009261 1.2e-21 107.8 222 35.1
Peaxi162Scf00813g00118 Petunia axillaris HOM05D007216 ORTHO05D009261 1.2e-21 107.8 208 38.5
Sed0019243 Sechium edule HOM05D007216 ORTHO05D009261 2.6e-21 106.7 180 38.9
C09p25930 Brassica napus HOM05D007216 ORTHO05D009261 3.4e-21 106.3 191 39.8
CANSAT78G2280 Cannabis sativa HOM05D007216 ORTHO05D009261 3.4e-21 106.3 230 36.5
DCAR_027275 Daucus carota HOM05D007216 ORTHO05D009261 3.4e-21 106.3 227 38.3
BolC9t55498H Brassica oleracea HOM05D007216 ORTHO05D009261 5.8e-21 105.5 214 37.4
Aa31LG5G3580 Aethionema arabicum HOM05D007216 ORTHO05D009261 7.6e-21 105.1 221 33.9
Gohir.A02G035500 Gossypium hirsutum HOM05D007216 ORTHO05D009261 7.6e-21 105.1 177 41.2
TWI09G1088 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 1.0e-20 104.8 202 35.1
SpUn0744_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 1.7e-20 104.0 189 37.6
THA.LOC104801097 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 1.7e-20 104.0 256 32.4
Psat6g102240 Pisum sativum HOM05D007216 ORTHO05D009261 6.5e-20 102.1 218 34.9
CARHR006300 Cardamine hirsuta HOM05D007216 ORTHO05D009261 1.4e-19 100.9 212 35.8
TWI73G0753 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 4.2e-19 99.4 201 35.8
MSTRG.4097 Avicennia marina HOM05D007216 ORTHO05D009261 5.5e-19 99.0 221 34.4
Glyma.02G000800 Glycine max HOM05D007216 ORTHO05D009261 5.5e-19 99.0 223 36.3
Lalb_Chr03g0037861 Lupinus albus HOM05D007216 ORTHO05D009261 9.3e-19 98.2 186 38.2
BraA06t27645Z Brassica rapa HOM05D007216 ORTHO05D009261 1.2e-18 97.8 194 37.1
Migut.G00433 Erythranthe guttata HOM05D007216 ORTHO05D009261 2.1e-18 97.1 180 39.4
Sc13g0004990 Simmondsia chinensis HOM05D007216 ORTHO05D009261 4.6e-18 95.9 238 35.3
Nitab4.5_0004798g0070 Nicotiana tabacum HOM05D007216 ORTHO05D009261 1.0e-17 94.7 212 36.3
AT5G43650 Arabidopsis thaliana HOM05D007216 ORTHO05D009261 3.0e-17 93.2 189 37.6
Aqoxy5G00327 Aquilegia oxysepala HOM05D007216 ORTHO05D009261 6.7e-17 92.0 121 47.9
TPR.G22479 Trifolium pratense HOM05D007216 ORTHO05D009261 1.6e-15 87.4 204 35.8
Os03g0741100 Oryza sativa ssp. japonica HOM05D007216 ORTHO05D009261 2.8e-15 86.7 160 36.2
Zm00001eb056760 Zea mays HOM05D007216 ORTHO05D009261 6.3e-15 85.5 153 36.6
Lj6C656T7 Lonicera japonica HOM05D007216 ORTHO05D009261 1.1e-14 84.7 193 34.7
Phvul.007G280700 Phaseolus vulgaris HOM05D007216 ORTHO05D009261 5.9e-13 79.0 155 38.1
Dinv44631 Davidia involucrata HOM05D007216 ORTHO05D009261 1.7e-12 77.4 114 43.0
HPP92_023468 Vanilla planifolia HOM05D007216 ORTHO05D009261 3.8e-12 76.3 185 32.4
Nitab4.5_0000525g0160 Nicotiana tabacum HOM05D007216 ORTHO05D009261 1.1e-11 74.7 212 30.2
Hma1.2p1_0893F.1_g233480 Hydrangea macrophylla HOM05D007216 ORTHO05D009261 1.4e-11 74.3 104 39.4
CAN.G1007.15 Capsicum annuum HOM05D007216 ORTHO05D009261 3.2e-11 73.2 141 35.5
HPP92_023463 Vanilla planifolia HOM05D007216 ORTHO05D009261 1.2e-10 71.2 181 32.0
SpUn0429_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 2.7e-10 70.1 188 30.9
Cc06_g11520 Coffea canephora HOM05D004059 ORTHO05D004591 1.9e-08 63.9 135 33.3
Actinidia29906 Actinidia chinensis HOM05D004059 ORTHO05D004591 3.3e-08 63.2 139 36.0
CSS0005796 Camellia sinensis var. sinensis HOM05D004059 ORTHO05D004591 1.6e-07 60.8 156 32.1
HPP92_027840 Vanilla planifolia HOM05D007216 ORTHO05D009261 8.2e-07 58.5 193 26.9
Nitab4.5_0006053g0020 Nicotiana tabacum HOM05D004059 ORTHO05D004591 3.1e-06 56.6 190 29.5
CAN.G52.7 Capsicum annuum HOM05D004059 ORTHO05D004591 6.9e-06 55.5 145 31.7
SGA_v2.0_scaffold23G10028 Striga asiatica HOM05D004059 ORTHO05D004591 6.9e-06 55.5 166 28.3
PGSC0003DMG400000335 Solanum tuberosum HOM05D000597 ORTHO05D004591 9.0e-06 55.1 132 36.4
unitig_749.g14229 Utricularia gibba HOM05D004059 ORTHO05D004591 9.0e-06 55.1 98 37.8


User provided reference genes

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