Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02439 Nelumbo nucifera HOM05D000989 ORTHO05D001287 7.2e-16 85.9 37 100.0
Nn3g18800 Nelumbo nucifera HOM05D000989 ORTHO05D001287 1.4e-14 81.6 37 94.6
Nn1g00440 Nelumbo nucifera HOM05D000989 ORTHO05D001287 5.7e-13 76.3 37 89.2
TAR375G0446 Trochodendron aralioides HOM05D000989 ORTHO05D001287 5.3e-11 69.7 35 77.1
PSO063G0667 Papaver somniferum HOM05D000989 ORTHO05D001287 6.9e-11 69.3 32 84.4
PSO782G4281 Papaver somniferum HOM05D000989 ORTHO05D001287 6.9e-11 69.3 32 84.4
Sed0021271 Sechium edule HOM05D000989 ORTHO05D001287 4.5e-10 66.6 37 67.6
TAR374G1276 Trochodendron aralioides HOM05D000989 ORTHO05D001287 5.9e-10 66.2 37 73.0
MELO3C016366.2 Cucumis melo HOM05D000989 ORTHO05D001287 2.2e-09 64.3 37 64.9
CsaV3_4G005850 Cucumis sativus L. HOM05D000989 ORTHO05D001287 2.2e-09 64.3 37 64.9
FvH4_7g32880 Fragaria vesca HOM05D000989 ORTHO05D001287 2.2e-09 64.3 33 69.7
FAN01G2256 Fragaria x ananassa HOM05D000989 ORTHO05D001287 2.2e-09 64.3 33 69.7
FAN10G0985 Fragaria x ananassa HOM05D000989 ORTHO05D001287 2.2e-09 64.3 33 69.7
FAN10G2232 Fragaria x ananassa HOM05D000989 ORTHO05D001287 2.2e-09 64.3 33 69.7
Manes.01G054900 Manihot esculenta HOM05D000989 ORTHO05D001287 2.2e-09 64.3 35 71.4
RcHm_v2.0_Chr1g0382831 Rosa chinensis HOM05D000989 ORTHO05D001287 2.2e-09 64.3 35 68.6
Aqoxy5G04343 Aquilegia oxysepala HOM05D000989 ORTHO05D001287 8.5e-09 62.4 35 65.7
MBI12_g11797_MAGBIO Magnolia biondii HOM05D000989 ORTHO05D001287 1.4e-08 61.6 32 71.9
Dinv12897 Davidia involucrata HOM05D000989 ORTHO05D001287 1.9e-08 61.2 34 67.6
Duzib068G1164 Durio zibethinus HOM05D000989 ORTHO05D001287 1.9e-08 61.2 36 63.9
Rhsim02G0253900 Rhododendron simsii HOM05D000989 ORTHO05D001287 1.9e-08 61.2 36 63.9
TWI81G0771 Tripterygium wilfordii HOM05D000989 ORTHO05D001287 1.9e-08 61.2 37 64.9
FAN03G0537 Fragaria x ananassa HOM05D000989 ORTHO05D001287 2.5e-08 60.8 31 71.0
TAR636G0772 Trochodendron aralioides HOM05D000989 ORTHO05D001287 2.5e-08 60.8 26 88.5
VMungo1309G0109 Vigna mungo HOM05D000989 ORTHO05D001287 2.5e-08 60.8 35 60.0
PGR031G3030 Punica granatum HOM05D000989 ORTHO05D001287 3.2e-08 60.5 31 67.7
MBI04_g22064_MAGBIO Magnolia biondii HOM05D000989 ORTHO05D001287 4.2e-08 60.1 34 61.8
MSTRG.13699 Avicennia marina HOM05D000989 ORTHO05D001287 5.5e-08 59.7 37 62.2
ClCG07G008250 Citrullus lanatus HOM05D000989 ORTHO05D001287 5.5e-08 59.7 36 63.9
Gohir.A11G017900 Gossypium hirsutum HOM05D000989 ORTHO05D001287 5.5e-08 59.7 33 66.7
Gohir.D11G017700 Gossypium hirsutum HOM05D000989 ORTHO05D001287 5.5e-08 59.7 33 66.7
Gorai.007G018700 Gossypium raimondii HOM05D000989 ORTHO05D001287 5.5e-08 59.7 33 66.7
THA.LOC104823628 Tarenaya hassleriana HOM05D000989 ORTHO05D001287 5.5e-08 59.7 34 67.6
Thecc.03G208300 Theobroma cacao HOM05D000989 ORTHO05D001287 5.5e-08 59.7 37 62.2
TWI60G1484 Tripterygium wilfordii HOM05D000989 ORTHO05D001287 5.5e-08 59.7 37 64.9
Eucgr.D01658 Eucalyptus grandis HOM05D000989 ORTHO05D001287 7.2e-08 59.3 34 64.7
Lalb_Chr08g0239671 Lupinus albus HOM05D000989 ORTHO05D001287 7.2e-08 59.3 35 54.3
MD00G1034500 Malus domestica HOM05D000989 ORTHO05D001287 7.2e-08 59.3 38 68.4
Nitab4.5_0003419g0040 Nicotiana tabacum HOM05D000989 ORTHO05D001287 7.2e-08 59.3 33 66.7
Nitab4.5_0002520g0070 Nicotiana tabacum HOM05D000989 ORTHO05D001287 9.4e-08 58.9 34 61.8
Potri.012G021400 Populus trichocarpa HOM05D000989 ORTHO05D001287 9.4e-08 58.9 37 56.8
Duzib084G1146 Durio zibethinus HOM05D000989 ORTHO05D001287 1.2e-07 58.5 31 67.7
Lalb_Chr11g0067391 Lupinus albus HOM05D000989 ORTHO05D001287 1.2e-07 58.5 35 57.1
Thecc.03G217400 Theobroma cacao HOM05D000989 ORTHO05D001287 1.2e-07 58.5 33 63.6
Actinidia22220 Actinidia chinensis HOM05D000989 ORTHO05D001287 1.6e-07 58.2 34 64.7
Gohir.A09G187700 Gossypium hirsutum HOM05D000989 ORTHO05D001287 1.6e-07 58.2 29 69.0
vmacro11485 Vaccinium macrocarpon HOM05D000989 ORTHO05D001287 1.6e-07 58.2 36 55.6
CiPaw.05G205000 Carya illinoinensis HOM05D000989 ORTHO05D001287 2.1e-07 57.8 37 54.1
Lj1g0023310 Lotus japonicus HOM05D000989 ORTHO05D001287 2.1e-07 57.8 35 57.1
Cpa.g.sc37.100 Carica papaya HOM05D000989 ORTHO05D001287 2.7e-07 57.4 34 61.8
COL.COLO4_10831 Corchorus olitorius HOM05D000989 ORTHO05D001287 2.7e-07 57.4 33 60.6
Glyma.06G136200 Glycine max HOM05D000989 ORTHO05D001287 2.7e-07 57.4 35 54.3
Oeu042859.1 Olea europaea HOM05D000989 ORTHO05D001287 2.7e-07 57.4 34 61.8
Prupe.5G133300 Prunus persica HOM05D000989 ORTHO05D001287 2.7e-07 57.4 38 65.8
PGSC0003DMG400012110 Solanum tuberosum HOM05D000989 ORTHO05D001287 2.7e-07 57.4 34 61.8
TWI15G0513 Tripterygium wilfordii HOM05D000989 ORTHO05D001287 2.7e-07 57.4 37 56.8
Cc08_g16990 Coffea canephora HOM05D000989 ORTHO05D001287 3.6e-07 57.0 31 71.0
Ciclev10020224m.g Citrus clementina HOM05D000989 ORTHO05D001287 6.1e-07 56.2 37 62.2
Nitab4.5_0005036g0010 Nicotiana tabacum HOM05D000989 ORTHO05D001287 6.1e-07 56.2 33 66.7
ClCG01G001390 Citrullus lanatus HOM05D000989 ORTHO05D001287 7.9e-07 55.8 34 58.8
Duzib205G0357 Durio zibethinus HOM05D000989 ORTHO05D001287 7.9e-07 55.8 35 57.1
Gohir.D09G182500 Gossypium hirsutum HOM05D000989 ORTHO05D001287 7.9e-07 55.8 29 65.5
Gorai.006G204800 Gossypium raimondii HOM05D000989 ORTHO05D001287 7.9e-07 55.8 29 65.5
MD06G1122300 Malus domestica HOM05D000989 ORTHO05D001287 7.9e-07 55.8 38 63.2
CANSAT21G1654 Cannabis sativa HOM05D000989 ORTHO05D001287 1.0e-06 55.5 35 65.7
CsaV3_5G001520 Cucumis sativus L. HOM05D000989 ORTHO05D001287 1.0e-06 55.5 34 58.8
Eucgr.K00428 Eucalyptus grandis HOM05D000989 ORTHO05D001287 1.0e-06 55.5 35 57.1
Manes.02G000900 Manihot esculenta HOM05D000989 ORTHO05D001287 1.0e-06 55.5 35 65.7
Solyc08g083330.2 Solanum lycopersicum HOM05D000989 ORTHO05D001287 1.0e-06 55.5 34 58.8
Sopen08g031540 Solanum pennellii HOM05D000989 ORTHO05D001287 1.0e-06 55.5 34 58.8
PGSC0003DMG400003208 Solanum tuberosum HOM05D000989 ORTHO05D001287 1.0e-06 55.5 37 62.2
Atru.chr9.1848 Acer truncatum HOM05D000989 ORTHO05D001287 1.4e-06 55.1 36 61.1
Lalb_Chr23g0271921 Lupinus albus HOM05D000989 ORTHO05D001287 1.4e-06 55.1 35 54.3
Potri.015G005000 Populus trichocarpa HOM05D000989 ORTHO05D001287 1.4e-06 55.1 33 60.6
MSTRG.24875 Avicennia marina HOM05D000989 ORTHO05D001287 1.8e-06 54.7 32 68.8
Migut.E00722 Erythranthe guttata HOM05D000989 ORTHO05D001287 2.3e-06 54.3 36 55.6
Peaxi162Scf00542g00059 Petunia axillaris HOM05D000989 ORTHO05D001287 2.3e-06 54.3 32 65.6
Prupe.2G318500 Prunus persica HOM05D000989 ORTHO05D001287 2.3e-06 54.3 39 53.8
TAR629G2596 Trochodendron aralioides HOM05D000989 ORTHO05D001287 2.3e-06 54.3 37 62.2
CSS0013054 Camellia sinensis var. sinensis HOM05D000989 ORTHO05D001287 3.0e-06 53.9 31 64.5
Dinv18761 Davidia involucrata HOM05D000989 ORTHO05D001287 3.0e-06 53.9 27 70.4
Glyma.10G172100 Glycine max HOM05D000989 ORTHO05D001287 3.0e-06 53.9 31 67.7
Glyma.20G218200 Glycine max HOM05D000989 ORTHO05D001287 3.0e-06 53.9 31 67.7
Nitab4.5_0000319g0060 Nicotiana tabacum HOM05D000989 ORTHO05D001287 3.0e-06 53.9 36 61.1
Nitab4.5_0005040g0010 Nicotiana tabacum HOM05D000989 ORTHO05D001287 3.0e-06 53.9 36 61.1
Oeu015755.1 Olea europaea HOM05D000989 ORTHO05D001287 3.0e-06 53.9 34 58.8
Peaxi162Scf00300g00827 Petunia axillaris HOM05D000989 ORTHO05D001287 3.0e-06 53.9 36 61.1
RcHm_v2.0_Chr7g0187601 Rosa chinensis HOM05D000989 ORTHO05D001287 3.0e-06 53.9 35 62.9
Solyc03g081320.3 Solanum lycopersicum HOM05D000989 ORTHO05D001287 3.0e-06 53.9 37 59.5
Sopen03g022040 Solanum pennellii HOM05D000989 ORTHO05D001287 3.0e-06 53.9 37 59.5
THA.LOC104817383 Tarenaya hassleriana HOM05D000989 ORTHO05D001287 3.0e-06 53.9 31 67.7
CAN.G303.13 Capsicum annuum HOM05D000989 ORTHO05D001287 3.9e-06 53.5 34 61.8
COL.COLO4_14367 Corchorus olitorius HOM05D000989 ORTHO05D001287 3.9e-06 53.5 33 66.7
Aa31LG2G1770 Aethionema arabicum HOM05D000989 ORTHO05D001287 5.1e-06 53.1 30 66.7
Ca_16776_v3 Cicer arietinum L. HOM05D000989 ORTHO05D001287 5.1e-06 53.1 32 53.1
FvH4_5g10520 Fragaria vesca HOM05D000989 ORTHO05D001287 5.1e-06 53.1 35 60.0
FAN04G2039 Fragaria x ananassa HOM05D000989 ORTHO05D001287 5.1e-06 53.1 35 60.0
FAN13G2159 Fragaria x ananassa HOM05D000989 ORTHO05D001287 5.1e-06 53.1 35 60.0
FAN18G2710 Fragaria x ananassa HOM05D000989 ORTHO05D001287 5.1e-06 53.1 35 60.0
Hma1.2p1_0198F.1_g085250 Hydrangea macrophylla HOM05D000989 ORTHO05D001287 5.1e-06 53.1 27 77.8
Cc02_g00850 Coffea canephora HOM05D000989 ORTHO05D001287 6.7e-06 52.8 32 53.1
Sabra15G0003500 Salix brachista HOM05D000989 ORTHO05D001287 6.7e-06 52.8 37 54.1
SGA_v2.0_scaffold165G38191 Striga asiatica HOM05D000989 ORTHO05D001287 6.7e-06 52.8 34 52.9
Atru.chr12.2425 Acer truncatum HOM05D000989 ORTHO05D001287 8.8e-06 52.4 28 67.9
MSTRG.12217 Avicennia marina HOM05D000989 ORTHO05D001287 8.8e-06 52.4 32 62.5
MSTRG.8546 Avicennia marina HOM05D000989 ORTHO05D001287 8.8e-06 52.4 32 59.4
CSS0029916 Camellia sinensis var. sinensis HOM05D000989 ORTHO05D001287 8.8e-06 52.4 31 61.3
FAN08G0172 Fragaria x ananassa HOM05D000989 ORTHO05D001287 8.8e-06 52.4 35 60.0
QL02p027280 Quercus lobata HOM05D000989 ORTHO05D001287 8.8e-06 52.4 25 76.0
Sp2g00010 Schrenkiella parvula HOM05D000989 ORTHO05D001287 8.8e-06 52.4 35 65.7


User provided reference genes

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