Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02359 Nelumbo nucifera HOM05D004826 ORTHO05D006367 5.0e-182 641.0 321 100.0
TAR633G1509 Trochodendron aralioides HOM05D004826 ORTHO05D006367 7.8e-143 510.8 305 83.9
Dinv34775 Davidia involucrata HOM05D004826 ORTHO05D006367 1.6e-132 476.5 305 78.4
Aqoxy5G00445 Aquilegia oxysepala HOM05D004826 ORTHO05D006367 2.5e-125 452.6 325 71.4
GSVIVG01001175001 Vitis vinifera HOM05D004826 ORTHO05D006367 4.8e-124 448.4 305 71.5
Actinidia24908 Actinidia chinensis HOM05D004826 ORTHO05D006367 1.4e-123 446.8 305 72.8
Hma1.2p1_0822F.1_g224300 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 1.4e-123 446.8 298 74.8
Potri.005G211600 Populus trichocarpa HOM05D004826 ORTHO05D006367 5.3e-123 444.9 318 68.2
Manes.05G079700 Manihot esculenta HOM05D004826 ORTHO05D006367 1.7e-121 439.9 304 71.1
MD11G1282600 Malus domestica HOM05D004826 ORTHO05D006367 4.9e-121 438.3 304 71.4
PSO210G5512 Papaver somniferum HOM05D004826 ORTHO05D006367 2.5e-120 436.0 294 73.8
Cpa.g.sc2545.1 Carica papaya HOM05D004826 ORTHO05D006367 9.3e-120 434.1 361 62.3
PSO832G3843 Papaver somniferum HOM05D004826 ORTHO05D006367 1.2e-119 433.7 294 73.5
Prupe.8G238200 Prunus persica HOM05D004826 ORTHO05D006367 2.1e-119 433.0 304 70.4
CSS0031998 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 4.6e-119 431.8 306 72.5
TWI75G1621 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 6.0e-119 431.4 303 69.6
Haze_04685 Corylus avellana HOM05D004826 ORTHO05D006367 1.8e-118 429.9 305 71.5
CSS0030159 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 6.7e-118 427.9 306 71.6
Lj1A48T56 Lonicera japonica HOM05D004826 ORTHO05D006367 1.1e-117 427.2 318 69.2
Gorai.008G003800 Gossypium raimondii HOM05D004826 ORTHO05D006367 1.5e-117 426.8 318 68.9
FAN27G1728 Fragaria x ananassa HOM05D004826 ORTHO05D006367 2.5e-117 426.0 310 69.7
Eucgr.K03351 Eucalyptus grandis HOM05D004826 ORTHO05D006367 9.6e-117 424.1 301 69.4
FAN20G2615 Fragaria x ananassa HOM05D004826 ORTHO05D006367 9.6e-117 424.1 310 69.0
Gohir.A12G004300 Gossypium hirsutum HOM05D004826 ORTHO05D006367 1.3e-116 423.7 318 67.9
RcHm_v2.0_Chr6g0290561 Rosa chinensis HOM05D004826 ORTHO05D006367 1.3e-116 423.7 298 70.8
FvH4_2g23260 Fragaria vesca HOM05D004826 ORTHO05D006367 1.6e-116 423.3 308 69.8
Thecc.01G275300 Theobroma cacao HOM05D004826 ORTHO05D006367 1.6e-116 423.3 312 67.0
Duzib138G1281 Durio zibethinus HOM05D004826 ORTHO05D006367 3.7e-116 422.2 304 68.8
COL.COLO4_09064 Corchorus olitorius HOM05D004826 ORTHO05D003095 4.8e-116 421.8 304 68.4
FAN15G0865 Fragaria x ananassa HOM05D004826 ORTHO05D006367 6.2e-116 421.4 310 68.7
THA.LOC104801247 Tarenaya hassleriana HOM05D004826 ORTHO05D006367 6.2e-116 421.4 304 69.4
Gohir.D12G004000 Gossypium hirsutum HOM05D004826 ORTHO05D006367 8.2e-116 421.0 312 68.3
Cc01_g19270 Coffea canephora HOM05D004826 ORTHO05D006367 1.4e-115 420.2 317 68.5
FAN24G0969 Fragaria x ananassa HOM05D004826 ORTHO05D006367 4.0e-115 418.7 308 69.5
PGSC0003DMG400005331 Solanum tuberosum HOM05D004826 ORTHO05D006367 5.3e-115 418.3 306 69.6
Ciclev10020269m.g Citrus clementina HOM05D004826 ORTHO05D006367 9.0e-115 417.5 304 68.4
CANSAT25G1434 Cannabis sativa HOM05D004826 ORTHO05D006367 1.2e-114 417.2 323 66.3
CsaV3_7G027950 Cucumis sativus L. HOM05D004826 ORTHO05D006367 7.6e-114 414.5 310 67.1
Sopen06g003480 Solanum pennellii HOM05D004826 ORTHO05D006367 1.3e-113 413.7 306 69.0
Solyc06g008700.3 Solanum lycopersicum HOM05D004826 ORTHO05D006367 2.2e-113 412.9 306 69.0
MELO3C015814.2 Cucumis melo HOM05D004826 ORTHO05D006367 3.2e-112 409.1 310 66.1
QL12p021024 Quercus lobata HOM05D004826 ORTHO05D006367 4.2e-112 408.7 387 57.1
Oeu025741.1 Olea europaea HOM05D004826 ORTHO05D006367 7.1e-112 407.9 300 70.0
DCAR_002720 Daucus carota HOM05D004826 ORTHO05D006367 2.1e-111 406.4 305 67.2
Thhalv10007706m.g Eutrema salsugineum HOM05D004826 ORTHO05D006367 2.1e-111 406.4 305 66.9
vmacro14910 Vaccinium macrocarpon HOM05D004826 ORTHO05D006367 6.0e-111 404.8 332 63.6
Rhsim01G0273300 Rhododendron simsii HOM05D004826 ORTHO05D006367 1.0e-110 404.1 307 67.1
Sp1g02120 Schrenkiella parvula HOM05D004826 ORTHO05D006367 1.0e-110 404.1 306 66.0
Migut.D00320 Erythranthe guttata HOM05D004826 ORTHO05D006367 6.7e-110 401.4 306 65.7
ECA236G2315 Erigeron canadensis HOM05D004826 ORTHO05D006367 8.7e-110 401.0 291 68.0
Carub.0001s0225 Capsella rubella HOM05D004826 ORTHO05D006367 2.5e-109 399.4 305 65.6
Lsat_1_v5_gn_8_56761 Lactuca sativa HOM05D004826 ORTHO05D006367 2.5e-109 399.4 312 64.1
Peaxi162Scf00572g00217 Petunia axillaris HOM05D004826 ORTHO05D006367 2.5e-109 399.4 305 67.5
TPR.G24327 Trifolium pratense HOM05D004826 ORTHO05D006367 3.3e-109 399.1 300 69.0
AT1G03110 Arabidopsis thaliana HOM05D004826 ORTHO05D006367 4.3e-109 398.7 304 65.5
Psat3g063080 Pisum sativum HOM05D004826 ORTHO05D006367 4.3e-109 398.7 308 67.5
Sabra05G0161700 Salix brachista HOM05D004826 ORTHO05D006367 9.7e-109 397.5 341 58.4
HPP92_006117 Vanilla planifolia HOM05D004826 ORTHO05D006367 2.8e-108 396.0 304 64.1
Phvul.001G153300 Phaseolus vulgaris HOM05D004826 ORTHO05D006367 3.7e-108 395.6 299 68.9
arahy.Tifrunner.gnm1.ann1.ZSCD81 Arachis hypogaea HOM05D004826 ORTHO05D006367 6.3e-108 394.8 306 67.6
BcaC07g42266 Brassica carinata HOM05D004826 ORTHO05D002453 8.2e-108 394.4 305 64.3
VMungo1383G1287 Vigna mungo HOM05D004826 ORTHO05D006367 8.2e-108 394.4 299 67.9
HanXRQChr04g0118961 Helianthus annuus HOM05D004826 ORTHO05D006367 1.1e-107 394.0 313 64.2
CDE06G0967 Ceratophyllum demersum HOM05D004826 ORTHO05D006367 1.4e-107 393.7 306 63.4
AL1G12580 Arabidopsis lyrata HOM05D004826 ORTHO05D006367 2.4e-107 392.9 304 65.8
Aa31LG1G9410 Aethionema arabicum HOM05D004826 ORTHO05D006367 3.1e-107 392.5 322 61.8
arahy.Tifrunner.gnm1.ann1.HM2HLZ Arachis hypogaea HOM05D004826 ORTHO05D006367 3.1e-107 392.5 307 67.1
Ca_08614_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 4.1e-107 392.1 306 67.0
Glyma.03G155900 Glycine max HOM05D004826 ORTHO05D006367 4.1e-107 392.1 300 67.7
Ah.02g110880 Amaranthus hybridus HOM05D004826 ORTHO05D006367 1.5e-106 390.2 310 64.5
Atru.chr5.1473 Acer truncatum HOM05D004826 ORTHO05D006367 5.9e-106 388.3 268 70.9
ClCG09G007220 Citrullus lanatus HOM05D004826 ORTHO05D006367 7.7e-106 387.9 348 60.1
BraA09t42171Z Brassica rapa HOM05D004826 ORTHO05D002453 1.0e-105 387.5 298 64.4
SalBow4G1440 Salvia bowleyana HOM05D004826 ORTHO05D006367 2.2e-105 386.3 307 63.2
MSTRG.18248 Avicennia marina HOM05D004826 ORTHO05D006367 2.9e-105 386.0 305 64.3
A09p68350 Brassica napus HOM05D004826 ORTHO05D002453 5.0e-105 385.2 298 64.1
A08p37480 Brassica napus HOM05D004826 ORTHO05D006367 6.5e-105 384.8 306 63.4
CARHR002460 Cardamine hirsuta HOM05D004826 ORTHO05D006367 1.1e-104 384.0 296 64.9
Glyma.19G158200 Glycine max HOM05D004826 ORTHO05D006367 1.4e-104 383.6 299 66.2
Medtr7g095190 Medicago truncatula HOM05D004826 ORTHO05D006367 1.4e-104 383.6 306 64.7
MD03G1261900 Malus domestica HOM05D004826 ORTHO05D006367 3.2e-104 382.5 325 61.8
Sc17g0001330 Simmondsia chinensis HOM05D004826 ORTHO05D006367 3.2e-104 382.5 295 65.4
Lj1g0007005 Lotus japonicus HOM05D004826 ORTHO05D006367 1.6e-103 380.2 305 66.6
C08p00410 Brassica napus HOM05D004826 ORTHO05D006367 3.6e-103 379.0 307 64.2
BolC8t46840H Brassica oleracea HOM05D004826 ORTHO05D006367 4.6e-103 378.6 315 61.9
EL10Ac5g10541 Beta vulgaris HOM05D004826 ORTHO05D006367 7.9e-103 377.9 313 62.0
C08p52920 Brassica napus HOM05D004826 ORTHO05D002453 1.8e-102 376.7 312 61.2
BraA08t35646Z Brassica rapa HOM05D004826 ORTHO05D006367 6.7e-102 374.8 316 61.1
Os03g0746800 Oryza sativa ssp. japonica HOM05D004826 ORTHO05D006367 8.8e-102 374.4 306 62.7
Ca_08622_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 5.7e-101 371.7 284 68.0
AUR62028599 Chenopodium quinoa HOM05D004826 ORTHO05D006367 7.4e-101 371.3 306 63.1
BolC8t52808H Brassica oleracea HOM05D004826 ORTHO05D002453 3.7e-100 369.0 318 60.1
AUR62032326 Chenopodium quinoa HOM05D004826 ORTHO05D006367 8.2e-100 367.9 308 62.0
Lalb_Chr01g0020091 Lupinus albus HOM05D004826 ORTHO05D006367 2.2e-97 359.8 309 63.1
PGR044G1874 Punica granatum HOM05D004826 ORTHO05D006367 3.2e-96 355.9 299 60.9
C05p01720 Brassica napus HOM05D004826 ORTHO05D006367 3.9e-94 349.0 310 60.3
RcHm_v2.0_Chr6g0290571 Rosa chinensis HOM05D004826 ORTHO05D006367 1.9e-88 330.1 247 66.4
unitig_0.g133 Utricularia gibba HOM05D004826 ORTHO05D006367 6.1e-87 325.1 332 53.3
CiPaw.07G089800 Carya illinoinensis HOM05D004826 ORTHO05D006367 2.2e-81 306.6 204 73.5
Nitab4.5_0005696g0030 Nicotiana tabacum HOM05D004826 ORTHO05D006367 3.2e-80 302.8 272 59.6
Zm00001eb215000 Zea mays HOM05D004826 ORTHO05D006367 1.8e-78 297.0 305 54.4
SHI16389 Sapria himalayana HOM05D000105 ORTHO05D000023 6.8e-78 295.0 201 69.2
A10p01740 Brassica napus HOM05D004826 ORTHO05D006367 1.5e-77 293.9 318 52.8
SEGI_35891 Sequoiadendron giganteum HOM05D004826 ORTHO05D006367 5.7e-77 292.0 304 50.7
Sed0001689 Sechium edule HOM05D004826 ORTHO05D006367 9.4e-72 274.6 218 62.4
MBI05_g20783_MAGBIO Magnolia biondii HOM05D004826 ORTHO05D006367 9.8e-69 264.6 276 54.3
C01p00020 Brassica napus HOM05D004826 ORTHO05D006367 3.1e-67 259.6 292 49.7
BolC1t00008H Brassica oleracea HOM05D004826 ORTHO05D006367 4.5e-66 255.8 292 49.0
Pp3c3_10370 Physcomitrium patens HOM05D004826 ORTHO05D006367 1.0e-65 254.6 299 46.8
Hma1.2p1_0822F.1_g224310 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 1.3e-65 254.2 174 74.1
SMO358G0471 Selaginella moellendorffii HOM05D004826 ORTHO05D006367 2.5e-64 250.0 270 50.7
Mapoly0048s0007 Marchantia polymorpha HOM05D004826 ORTHO05D006367 4.7e-63 245.7 284 44.7
BcaNung01310 Brassica carinata HOM05D004826 ORTHO05D006367 1.8e-62 243.8 290 47.6
CSS0007905 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 8.9e-62 241.5 157 73.9
BcaNung01308 Brassica carinata HOM05D004826 ORTHO05D006367 3.4e-61 239.6 276 49.3
CBR_g19915 Chara braunii HOM05D004826 ORTHO05D006367 9.2e-59 231.5 396 37.1
CSS0022346 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 3.3e-56 223.0 156 71.2
BolC1t00011H Brassica oleracea HOM05D004826 ORTHO05D006367 1.0e-54 218.0 227 52.4
BraA10t42449Z Brassica rapa HOM05D004826 ORTHO05D006367 4.3e-48 196.1 163 61.3
SGA_v2.0_scaffold138G35320 Striga asiatica HOM05D004826 ORTHO05D006367 1.5e-45 187.6 277 40.4
AagrBONN_evm.TU.Sc2ySwM_228.3229 Anthoceros agrestis HOM05D011762 ORTHO05D014803 1.2e-42 177.9 190 50.5
ATR0665G626 Amborella trichopoda HOM05D004826 ORTHO05D006367 6.6e-41 172.2 125 68.0
CiPaw.07G089700 Carya illinoinensis HOM05D004826 ORTHO05D006367 3.0e-33 146.7 100 71.0
arahy.Tifrunner.gnm1.ann1.QRYF2V Arachis hypogaea HOM05D004826 ORTHO05D006367 1.1e-32 144.8 333 36.3
TWI12G0215 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 5.6e-32 142.5 107 63.6
Hma1.2p1_0822F.1_g224290 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 1.5e-29 134.4 95 68.4
Cre08.g374800 Chlamydomonas reinhardtii HOM05D004826 ORTHO05D006367 3.0e-25 120.2 233 28.8
MCO04G388 Micromonas commoda HOM05D004826 ORTHO05D006367 2.4e-22 110.5 354 28.2
Nitab4.5_0025955g0010 Nicotiana tabacum HOM05D004826 ORTHO05D006367 3.4e-21 106.7 122 50.8
arahy.Tifrunner.gnm1.ann1.XCP3P1 Arachis hypogaea HOM05D004826 ORTHO05D006367 1.3e-20 104.8 313 31.9
Gorai.005G155300 Gossypium raimondii HOM05D004826 ORTHO05D006367 9.3e-19 98.6 68 63.2
Gohir.D02G138850 Gossypium hirsutum HOM05D004826 ORTHO05D006367 1.6e-18 97.8 68 63.2
COL.COLO4_05144 Corchorus olitorius HOM05D004826 ORTHO05D006367 3.9e-17 93.2 85 56.5
Actinidia21127 Actinidia chinensis HOM05D004826 ORTHO05D006367 5.1e-17 92.8 327 31.8
Lj1C48G4 Lonicera japonica HOM05D000001 ORTHO05D000003 1.9e-16 90.9 69 62.3
arahy.Tifrunner.gnm1.ann1.DV54YZ Arachis hypogaea HOM05D004826 ORTHO05D006367 2.8e-15 87.0 85 56.5
BcaC05g24557 Brassica carinata HOM05D001359 ORTHO05D001200 4.8e-15 86.3 162 40.1
PRCOL_00006778 Prasinoderma coloniale HOM05D004826 ORTHO05D006367 1.4e-14 84.7 267 30.0
QL12p021035 Quercus lobata HOM05D004826 ORTHO05D006367 1.4e-11 74.7 110 43.6
Sabra02G0041400 Salix brachista HOM05D004826 ORTHO05D006367 5.4e-11 72.8 47 66.0
BolC5t28951H Brassica oleracea HOM05D004826 ORTHO05D006367 4.6e-10 69.7 160 33.8
arahy.Tifrunner.gnm1.ann1.C0LV86 Arachis hypogaea HOM05D000453 ORTHO05D000387 6.0e-10 69.3 191 28.8
Sopen04g001030 Solanum pennellii HOM05D000453 ORTHO05D000387 7.9e-10 68.9 187 27.8
Solyc04g005020.3 Solanum lycopersicum HOM05D000453 ORTHO05D000387 1.3e-09 68.2 187 28.3
TAR362G0739 Trochodendron aralioides HOM05D004826 ORTHO05D006367 1.3e-09 68.2 314 27.7
PGSC0003DMG400001922 Solanum tuberosum HOM05D000453 ORTHO05D000387 2.3e-09 67.4 187 27.8
arahy.Tifrunner.gnm1.ann1.820J93 Arachis hypogaea HOM05D000453 ORTHO05D000387 5.1e-09 66.2 192 27.6
TWI81G0436 Tripterygium wilfordii HOM05D000453 ORTHO05D000387 5.1e-09 66.2 178 27.5
Migut.I00057 Erythranthe guttata HOM05D000453 ORTHO05D000387 8.7e-09 65.5 151 29.8
Aqoxy3G03109 Aquilegia oxysepala HOM05D000453 ORTHO05D000387 1.1e-08 65.1 182 28.0
TPR.G37519 Trifolium pratense HOM05D000453 ORTHO05D000387 1.9e-08 64.3 176 26.1
Potri.012G076000 Populus trichocarpa HOM05D000453 ORTHO05D000387 3.3e-08 63.5 244 25.4
HanXRQChr09g0271851 Helianthus annuus HOM05D000453 ORTHO05D000387 4.3e-08 63.2 176 26.7
CANSAT67G0002 Cannabis sativa HOM05D000453 ORTHO05D000387 7.4e-08 62.4 270 27.8
Lj4g0006234 Lotus japonicus HOM05D000453 ORTHO05D000387 9.6e-08 62.0 245 26.9
CSS0013650 Camellia sinensis var. sinensis HOM05D000453 ORTHO05D000387 6.2e-07 59.3 189 25.4
AUR62031044 Chenopodium quinoa HOM05D000453 ORTHO05D000387 8.1e-07 58.9 182 25.8
VMungo1309G1244 Vigna mungo HOM05D000453 ORTHO05D000387 8.1e-07 58.9 156 28.8
Phvul.009G182000 Phaseolus vulgaris HOM05D000453 ORTHO05D000387 1.1e-06 58.5 154 27.9
Pp3c22_1410 Physcomitrium patens HOM05D000992 ORTHO05D001928 1.1e-06 58.5 187 28.3
AUR62008283 Chenopodium quinoa HOM05D000453 ORTHO05D000387 5.3e-06 56.2 182 25.8
SMO340G0134 Selaginella moellendorffii HOM05D000453 ORTHO05D000387 5.3e-06 56.2 210 26.2
Lj5P133T72 Lonicera japonica HOM05D000453 ORTHO05D000387 6.9e-06 55.8 233 27.5
Sabra12G0054200 Salix brachista HOM05D000453 ORTHO05D000387 6.9e-06 55.8 175 25.1


User provided reference genes

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