Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02037 Nelumbo nucifera HOM05D003918 ORTHO05D004494 6.0e-27 123.2 55 100.0
CAN.G246.3 Capsicum annuum HOM05D003918 ORTHO05D004494 5.5e-12 73.6 51 62.7
Oeu007724.1 Olea europaea HOM05D003918 ORTHO05D004494 2.1e-11 71.6 51 62.7
ECA233G3711 Erigeron canadensis HOM05D003918 ORTHO05D004494 3.5e-11 70.9 51 60.8
Oeu000602.1 Olea europaea HOM05D003918 ORTHO05D004494 3.5e-11 70.9 51 60.8
Ciclev10029696m.g Citrus clementina HOM05D003918 ORTHO05D004494 4.6e-11 70.5 51 60.8
HanXRQChr01g0019451 Helianthus annuus HOM05D003918 ORTHO05D004494 4.6e-11 70.5 51 60.8
Lsat_1_v5_gn_1_64981 Lactuca sativa HOM05D003918 ORTHO05D004494 4.6e-11 70.5 51 60.8
CDE09G0194 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 6.1e-11 70.1 51 60.8
Dinv16240 Davidia involucrata HOM05D003918 ORTHO05D004494 6.1e-11 70.1 51 60.8
ECA248G3596 Erigeron canadensis HOM05D003918 ORTHO05D004494 6.1e-11 70.1 51 60.8
Migut.N02540 Erythranthe guttata HOM05D003918 ORTHO05D004494 6.1e-11 70.1 55 63.6
Manes.04G012300 Manihot esculenta HOM05D003918 ORTHO05D004494 6.1e-11 70.1 51 60.8
Manes.11G152900 Manihot esculenta HOM05D003918 ORTHO05D004494 6.1e-11 70.1 51 60.8
CSS0003214 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
CSS0025262 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
CSS0028017 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
CSS0049251 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
CANSAT64G2716 Cannabis sativa HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
CiPaw.13G144800 Carya illinoinensis HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
CiPaw.14G106800 Carya illinoinensis HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
Ca_10762_v3 Cicer arietinum L. HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
Cc01_g10200 Coffea canephora HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
COL.COLO4_19215 Corchorus olitorius HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
DCAR_018757 Daucus carota HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
Duzib168G2331 Durio zibethinus HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
Glyma.11G192100 Glycine max HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
Glyma.12G082300 Glycine max HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
Gohir.A05G085800 Gossypium hirsutum HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
Gohir.D05G087700 Gossypium hirsutum HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
Gorai.009G089700 Gossypium raimondii HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
Hma1.2p1_0051F.1_g029570 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
Lj3g0024072 Lotus japonicus HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
Lalb_Chr01g0004631 Lupinus albus HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
Medtr4g057040 Medicago truncatula HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
Os03g0146300 Oryza sativa ssp. japonica HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
Phvul.011G086900 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
Rhsim13G0101600 Rhododendron simsii HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
Sc21g0004230 Simmondsia chinensis HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
Sc21g0004490 Simmondsia chinensis HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
Thecc.09G297000 Theobroma cacao HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
TWI79G0503 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
TWI79G0939 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
vmacro03250 Vaccinium macrocarpon HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
HPP92_026243 Vanilla planifolia HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
Zm00001eb402980 Zea mays HOM05D003918 ORTHO05D004494 7.9e-11 69.7 51 60.8
PSO339G2710 Papaver somniferum HOM05D003918 ORTHO05D004494 1.0e-10 69.3 51 60.8
PSO801G0480 Papaver somniferum HOM05D003918 ORTHO05D004494 1.0e-10 69.3 51 60.8
QL01p014884 Quercus lobata HOM05D003918 ORTHO05D004494 1.3e-10 68.9 51 60.8
Aa31LG5G8120 Aethionema arabicum HOM05D003918 ORTHO05D004494 1.8e-10 68.6 51 58.8
CAN.G546.56 Capsicum annuum HOM05D003918 ORTHO05D004494 1.8e-10 68.6 51 58.8
Eucgr.J00392 Eucalyptus grandis HOM05D003918 ORTHO05D004494 1.8e-10 68.6 51 58.8
FvH4_3g30520 Fragaria vesca HOM05D003918 ORTHO05D004494 1.8e-10 68.6 51 58.8
FAN11G2739 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.8e-10 68.6 51 58.8
FAN21G0274 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.8e-10 68.6 51 58.8
HanXRQChr11g0346091 Helianthus annuus HOM05D003918 ORTHO05D004494 1.8e-10 68.6 51 58.8
Nitab4.5_0000173g0230 Nicotiana tabacum HOM05D003918 ORTHO05D004494 1.8e-10 68.6 51 58.8
Peaxi162Scf00983g00019 Petunia axillaris HOM05D003918 ORTHO05D004494 1.8e-10 68.6 51 58.8
RcHm_v2.0_Chr5g0056481 Rosa chinensis HOM05D003918 ORTHO05D004494 1.8e-10 68.6 51 58.8
Sed0005005 Sechium edule HOM05D003918 ORTHO05D004494 1.8e-10 68.6 51 58.8
Sopen11g026220 Solanum pennellii HOM05D003918 ORTHO05D004494 1.8e-10 68.6 51 58.8
PGSC0003DMG402000458 Solanum tuberosum HOM05D003918 ORTHO05D004494 1.8e-10 68.6 51 58.8
THA.LOC104815736 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 1.8e-10 68.6 51 58.8
Aqoxy1G01058 Aquilegia oxysepala HOM05D003918 ORTHO05D004494 2.3e-10 68.2 51 60.8
AL4G22250 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 2.3e-10 68.2 51 58.8
AT2G27960 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 2.3e-10 68.2 51 58.8
BcaB06g28178 Brassica carinata HOM05D003918 ORTHO05D004494 2.3e-10 68.2 51 58.8
Haze_03482 Corylus avellana HOM05D003918 ORTHO05D004494 2.3e-10 68.2 51 58.8
Lj1A213T32 Lonicera japonica HOM05D003918 ORTHO05D004494 2.3e-10 68.2 51 58.8
MBI17_g16530_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 2.3e-10 68.2 51 58.8
PGR119G0927 Punica granatum HOM05D003918 ORTHO05D004494 2.3e-10 68.2 51 58.8
Rhsim01G0210200 Rhododendron simsii HOM05D003918 ORTHO05D004494 2.3e-10 68.2 51 58.8
Sabra09G0001700 Salix brachista HOM05D003918 ORTHO05D004494 2.3e-10 68.2 51 58.8
TAR633G2652 Trochodendron aralioides HOM05D003918 ORTHO05D004494 2.3e-10 68.2 51 58.8
AL4G22230 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 3.0e-10 67.8 51 58.8
AT2G27970 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 3.0e-10 67.8 51 58.8
Carub.0004s0873 Capsella rubella HOM05D003918 ORTHO05D004494 3.0e-10 67.8 51 58.8
Thhalv10017678m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 3.0e-10 67.8 51 58.8
Gohir.A07G105200 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.0e-10 67.8 51 58.8
Gohir.D07G109300 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.0e-10 67.8 51 58.8
Gorai.001G117400 Gossypium raimondii HOM05D003918 ORTHO05D004494 3.0e-10 67.8 51 58.8
Lsat_1_v5_gn_6_43541 Lactuca sativa HOM05D003918 ORTHO05D004494 3.0e-10 67.8 51 58.8
Psat0ss2518g0280 Pisum sativum HOM05D003918 ORTHO05D004494 3.0e-10 67.8 51 58.8
Actinidia07191 Actinidia chinensis HOM05D001217 ORTHO05D004494 3.9e-10 67.4 51 58.8
BcaB03g11846 Brassica carinata HOM05D003918 ORTHO05D004494 3.9e-10 67.4 51 58.8
CARHR120680 Cardamine hirsuta HOM05D003918 ORTHO05D004494 3.9e-10 67.4 51 58.8
CDE02G4651 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 3.9e-10 67.4 33 87.9
ClCG02G021690 Citrullus lanatus HOM05D003918 ORTHO05D004494 3.9e-10 67.4 51 58.8
MELO3C026958.2 Cucumis melo HOM05D003918 ORTHO05D004494 3.9e-10 67.4 51 58.8
Thhalv10017487m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 3.9e-10 67.4 51 58.8
Nn6g35195 Nelumbo nucifera HOM05D003918 ORTHO05D004494 3.9e-10 67.4 33 87.9
Oeu040442.1 Olea europaea HOM05D003918 ORTHO05D004494 3.9e-10 67.4 51 58.8
PSO339G4781 Papaver somniferum HOM05D003918 ORTHO05D004494 3.9e-10 67.4 33 87.9
Potri.009G004000 Populus trichocarpa HOM05D003918 ORTHO05D004494 3.9e-10 67.4 51 58.8
Hund00834 Selenicereus undatus HOM05D003918 ORTHO05D004494 3.9e-10 67.4 51 58.8
TPR.G31695 Trifolium pratense HOM05D003918 ORTHO05D004494 3.9e-10 67.4 33 87.9
AUR62041324 Chenopodium quinoa HOM05D003918 ORTHO05D004494 5.1e-10 67.0 51 58.8
EL10Ac9g21015 Beta vulgaris HOM05D003918 ORTHO05D004494 6.7e-10 66.6 51 58.8
ClCG01G013880 Citrullus lanatus HOM05D003918 ORTHO05D004494 6.7e-10 66.6 51 58.8
Haze_23526 Corylus avellana HOM05D001217 ORTHO05D001097 6.7e-10 66.6 51 58.8
Oeu008363.1 Olea europaea HOM05D003918 ORTHO05D004494 6.7e-10 66.6 33 87.9
GSVIVG01031454001 Vitis vinifera HOM05D003918 ORTHO05D004494 6.7e-10 66.6 51 58.8
ATR0043G026 Amborella trichopoda HOM05D003918 ORTHO05D004494 8.7e-10 66.2 51 56.9
DCAR_015501 Daucus carota HOM05D003918 ORTHO05D004494 8.7e-10 66.2 51 58.8
Sp4g10790 Schrenkiella parvula HOM05D003918 ORTHO05D004494 8.7e-10 66.2 51 56.9
TWI31G0950 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 8.7e-10 66.2 51 58.8
TAR623G0966 Trochodendron aralioides HOM05D003918 ORTHO05D004494 8.7e-10 66.2 51 58.8
Actinidia03687 Actinidia chinensis HOM05D003918 ORTHO05D004494 1.1e-09 65.9 33 84.8
SalBow6G1569 Salvia bowleyana HOM05D003918 ORTHO05D004494 1.1e-09 65.9 51 58.8
CARHR120670 Cardamine hirsuta HOM05D003918 ORTHO05D004494 1.5e-09 65.5 51 54.9
Nn2g13876 Nelumbo nucifera HOM05D003918 ORTHO05D004494 1.5e-09 65.5 51 58.8
Carub.0004s0872 Capsella rubella HOM05D003918 ORTHO05D004494 1.9e-09 65.1 51 56.9
Dinv29385 Davidia involucrata HOM05D003918 ORTHO05D004494 1.9e-09 65.1 51 56.9
FAN25G0673 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.9e-09 65.1 51 56.9
TAR369G0366 Trochodendron aralioides HOM05D003918 ORTHO05D004494 1.9e-09 65.1 51 56.9
BcaC01g00919 Brassica carinata HOM05D003918 ORTHO05D004494 2.5e-09 64.7 51 54.9
BcaC02g08219 Brassica carinata HOM05D003918 ORTHO05D004494 2.5e-09 64.7 51 54.9
A04p21230 Brassica napus HOM05D003918 ORTHO05D004494 2.5e-09 64.7 51 54.9
A08p17020 Brassica napus HOM05D003918 ORTHO05D004494 2.5e-09 64.7 51 54.9
C03p85930 Brassica napus HOM05D003918 ORTHO05D004494 2.5e-09 64.7 51 54.9
C04p57080 Brassica napus HOM05D003918 ORTHO05D004494 2.5e-09 64.7 51 54.9
BolC4t27242H Brassica oleracea HOM05D003918 ORTHO05D004494 2.5e-09 64.7 51 54.9
BraA08t33664Z Brassica rapa HOM05D003918 ORTHO05D004494 2.5e-09 64.7 51 54.9
Pp3c14_11680 Physcomitrium patens HOM05D003918 ORTHO05D004494 2.5e-09 64.7 51 54.9
Pp3c2_6200 Physcomitrium patens HOM05D003918 ORTHO05D004494 2.5e-09 64.7 51 54.9
PGR102G3373 Punica granatum HOM05D003918 ORTHO05D004494 2.5e-09 64.7 51 56.9
THA.LOC104826394 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 2.5e-09 64.7 51 54.9
Actinidia24153 Actinidia chinensis HOM05D003918 ORTHO05D004494 3.3e-09 64.3 51 56.9
Ah.01g016010 Amaranthus hybridus HOM05D003918 ORTHO05D004494 3.3e-09 64.3 51 56.9
CsaV3_1G014150 Cucumis sativus L. HOM05D003918 ORTHO05D004494 3.3e-09 64.3 51 56.9
Migut.D02301 Erythranthe guttata HOM05D003918 ORTHO05D004494 3.3e-09 64.3 51 56.9
Glyma.12G083700 Glycine max HOM05D003918 ORTHO05D004494 3.3e-09 64.3 51 54.9
Hma1.2p1_0772F.1_g215980 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 3.3e-09 64.3 33 84.8
Lalb_Chr19g0136871 Lupinus albus HOM05D003918 ORTHO05D004494 3.3e-09 64.3 51 56.9
Oeu007309.2 Olea europaea HOM05D003918 ORTHO05D004494 3.3e-09 64.3 51 58.8
Prupe.6G113800 Prunus persica HOM05D003918 ORTHO05D004494 3.3e-09 64.3 51 56.9
Sed0024739 Sechium edule HOM05D003918 ORTHO05D004494 3.3e-09 64.3 51 56.9
unitig_899.g14962 Utricularia gibba HOM05D003918 ORTHO05D004494 3.3e-09 64.3 51 56.9
SEGI_17224 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 5.7e-09 63.5 51 54.9
PGSC0003DMG400018822 Solanum tuberosum HOM05D003918 ORTHO05D004494 5.7e-09 63.5 51 56.9
Lalb_Chr03g0027731 Lupinus albus HOM05D003918 ORTHO05D004494 7.4e-09 63.2 51 54.9
MD03G1128000 Malus domestica HOM05D003918 ORTHO05D004494 7.4e-09 63.2 51 54.9
MD11G1149400 Malus domestica HOM05D003918 ORTHO05D004494 7.4e-09 63.2 51 54.9
Cpa.g.sc47.8 Carica papaya HOM05D003918 ORTHO05D004494 9.7e-09 62.8 51 54.9
Mapoly0001s0011 Marchantia polymorpha HOM05D003918 ORTHO05D004494 9.7e-09 62.8 51 54.9
MELO3C004864.2 Cucumis melo HOM05D003918 ORTHO05D004494 1.6e-08 62.0 33 81.8
Eucgr.B03920 Eucalyptus grandis HOM05D003918 ORTHO05D004494 1.6e-08 62.0 49 57.1
FAN16G1510 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.6e-08 62.0 57 52.6
Potri.004G217500 Populus trichocarpa HOM05D003918 ORTHO05D004494 1.6e-08 62.0 51 54.9
SEGI_19027 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 1.6e-08 62.0 51 52.9
SGA_v2.0_scaffold50G18575 Striga asiatica HOM05D003918 ORTHO05D004494 1.6e-08 62.0 33 81.8
Zm00001eb003750 Zea mays HOM05D003918 ORTHO05D004494 1.6e-08 62.0 33 78.8
SalBow3G4245 Salvia bowleyana HOM05D003918 ORTHO05D004494 4.8e-08 60.5 51 54.9
SMO116G0276 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 6.3e-08 60.1 51 51.0
AagrBONN_evm.TU.Sc2ySwM_117.701 Anthoceros agrestis HOM05D005424 ORTHO05D006726 8.2e-08 59.7 43 60.5
Nitab4.5_0003880g0020 Nicotiana tabacum HOM05D003918 ORTHO05D004494 8.2e-08 59.7 49 53.1
MCO11G605 Micromonas commoda HOM05D003918 ORTHO05D004494 1.1e-07 59.3 51 49.0
Phvul.011G088400 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 1.8e-07 58.5 33 75.8
Gohir.A02G090001 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.1e-07 57.8 33 78.8
Ah.03g143830 Amaranthus hybridus HOM05D003918 ORTHO05D004494 4.1e-07 57.4 33 78.8
Cre03.g180350 Chlamydomonas reinhardtii HOM05D003918 ORTHO05D004494 1.2e-06 55.8 48 47.9
MBI16_g13165_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 1.2e-06 55.8 33 72.7
PRCOL_00005401 Prasinoderma coloniale HOM05D003918 ORTHO05D004494 1.2e-06 55.8 48 47.9
MBI10_g35299_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 1.0e-05 52.8 38 65.8


User provided reference genes

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