Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 7.8e-129 463.8 229 100.0
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 4.5e-92 341.7 226 77.9
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 3.3e-79 298.9 260 56.2
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 5.3e-77 291.6 263 56.7
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 2.9e-75 285.8 264 55.7
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 1.9e-74 283.1 263 55.9
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 3.0e-72 275.8 263 53.6
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 7.4e-71 271.2 256 52.7
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 9.7e-71 270.8 253 55.7
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 1.1e-69 267.3 254 53.9
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 1.4e-69 266.9 261 52.1
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 2.4e-69 266.2 266 53.0
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 3.1e-69 265.8 266 51.1
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 7.0e-69 264.6 247 56.7
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 3.5e-68 262.3 255 53.7
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 1.0e-67 260.8 259 52.9
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 1.7e-67 260.0 268 53.4
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 3.8e-67 258.8 240 52.1
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 1.1e-66 257.3 260 51.9
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 1.1e-66 257.3 256 50.4
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 2.5e-66 256.1 262 52.3
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 3.2e-66 255.8 208 59.6
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 3.2e-66 255.8 259 51.0
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 2.1e-65 253.1 266 51.9
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 2.7e-65 252.7 265 51.3
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 2.7e-65 252.7 265 51.7
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 4.7e-65 251.9 259 52.5
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 1.0e-64 250.8 266 50.8
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 1.8e-64 250.0 250 54.0
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 5.2e-64 248.4 268 50.0
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 5.2e-64 248.4 250 53.6
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 6.8e-64 248.1 262 47.3
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 1.2e-63 247.3 268 49.6
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 2.6e-63 246.1 265 51.3
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 3.4e-63 245.7 251 51.4
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 5.7e-63 245.0 257 51.4
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 5.7e-63 245.0 256 52.0
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 7.5e-63 244.6 257 51.4
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 1.3e-62 243.8 264 48.5
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 2.2e-62 243.0 252 52.0
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 1.4e-61 240.4 264 47.0
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 1.4e-61 240.4 242 49.6
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 4.1e-61 238.8 267 49.8
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 4.1e-61 238.8 267 50.6
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 7.0e-61 238.0 245 52.2
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.2e-60 237.3 265 49.4
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 3.5e-60 235.7 265 49.4
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 4.5e-60 235.3 264 48.9
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 7.7e-60 234.6 265 47.9
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 1.0e-59 234.2 203 55.7
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 1.0e-59 234.2 208 55.8
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.8e-59 232.3 265 49.4
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 6.5e-59 231.5 265 47.9
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 3.2e-58 229.2 258 47.3
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 3.2e-58 229.2 265 47.2
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 5.5e-58 228.4 234 52.1
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 7.2e-58 228.0 266 47.7
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 9.4e-58 227.6 263 48.3
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 9.4e-58 227.6 265 48.3
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 1.2e-57 227.3 265 47.5
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 1.6e-57 226.9 267 48.3
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 4.7e-57 225.3 258 48.1
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 6.1e-57 224.9 269 46.8
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 1.4e-56 223.8 259 47.1
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 2.3e-56 223.0 268 48.5
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 2.3e-56 223.0 258 48.1
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 5.2e-56 221.9 267 47.9
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 1.5e-55 220.3 253 47.4
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 2.0e-55 219.9 253 47.0
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 1.7e-54 216.9 209 50.7
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 2.2e-54 216.5 254 48.8
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 2.2e-54 216.5 265 46.4
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 2.2e-54 216.5 246 46.3
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 4.8e-54 215.3 125 86.4
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 1.1e-53 214.2 265 45.3
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 1.8e-53 213.4 263 46.0
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 3.1e-53 212.6 285 40.0
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 4.1e-53 212.2 265 42.3
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 1.2e-52 210.7 238 46.6
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 2.7e-52 209.5 199 53.3
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 2.7e-52 209.5 216 48.6
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 2.7e-52 209.5 211 52.1
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 2.7e-52 209.5 234 45.7
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 3.5e-52 209.1 266 42.5
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 7.7e-52 208.0 249 46.6
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 2.3e-51 206.5 252 46.0
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 5.0e-51 205.3 236 44.5
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 6.6e-51 204.9 261 44.4
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 3.3e-50 202.6 209 49.8
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 5.5e-50 201.8 249 44.6
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 7.2e-50 201.4 286 39.9
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 9.5e-50 201.1 261 41.8
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 1.2e-49 200.7 258 43.4
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 2.8e-49 199.5 261 44.4
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 2.8e-49 199.5 253 41.9
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 2.8e-49 199.5 243 46.1
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 4.7e-49 198.7 285 40.7
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 4.7e-49 198.7 249 45.0
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 4.7e-49 198.7 249 45.0
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 4.7e-49 198.7 249 45.0
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 4.7e-49 198.7 239 45.6
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 8.0e-49 198.0 234 44.4
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 8.0e-49 198.0 261 42.5
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 1.8e-48 196.8 253 43.9
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 2.3e-48 196.4 189 54.0
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 3.0e-48 196.1 262 42.4
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 5.2e-48 195.3 209 46.9
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 1.2e-47 194.1 267 40.4
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 1.5e-47 193.7 251 43.0
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 2.6e-47 193.0 271 39.9
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 7.5e-47 191.4 260 42.3
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 1.3e-46 190.7 271 40.6
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.3e-46 190.7 230 45.7
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 1.7e-46 190.3 254 43.7
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 1.7e-46 190.3 254 43.7
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 1.7e-46 190.3 254 43.7
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 1.7e-46 190.3 254 43.7
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 2.8e-46 189.5 241 41.5
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 2.8e-46 189.5 264 42.4
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 1.1e-45 187.6 251 43.8
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 1.8e-45 186.8 305 39.0
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 1.6e-44 183.7 241 40.2
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 1.6e-44 183.7 235 43.0
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 2.0e-44 183.3 274 43.1
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 3.5e-44 182.6 279 40.5
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 5.9e-44 181.8 235 44.7
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 1.3e-43 180.6 273 42.9
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 2.3e-43 179.9 284 40.1
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 6.6e-43 178.3 258 41.1
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 6.6e-43 178.3 201 46.8
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 5.6e-42 175.3 261 38.3
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 5.6e-42 175.3 243 42.0
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 7.3e-42 174.9 207 45.4
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.2e-41 174.1 204 43.6
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.2e-41 174.1 243 42.0
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 1.6e-41 173.7 201 43.3
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 2.1e-41 173.3 167 53.9
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 2.8e-41 172.9 179 49.7
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 8.0e-41 171.4 178 49.4
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 6.8e-40 168.3 207 44.0
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 8.9e-40 167.9 262 39.7
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 2.6e-39 166.4 230 43.5
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 8.3e-38 161.4 208 44.2
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 1.4e-37 160.6 265 38.9
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 1.9e-37 160.2 278 34.5
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 2.4e-37 159.8 139 59.0
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 2.0e-36 156.8 236 37.3
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 2.7e-36 156.4 214 40.7
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 2.3e-35 153.3 178 47.8
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 1.1e-34 151.0 233 39.1
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 5.6e-34 148.7 158 47.5
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 6.2e-33 145.2 184 41.8
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 2.9e-30 136.3 230 40.0
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 8.3e-30 134.8 219 37.9
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 1.9e-29 133.7 121 55.4
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 2.4e-29 133.3 198 37.4
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 7.8e-28 128.3 187 41.7
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 1.3e-27 127.5 154 41.6
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 1.6e-25 120.6 237 34.2
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 6.8e-24 115.2 179 40.2
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.5e-23 114.0 160 41.9
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 5.8e-23 112.1 205 34.1
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 7.6e-23 111.7 318 24.5
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 1.7e-22 110.5 302 25.2
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 4.9e-22 109.0 204 33.8
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 2.4e-21 106.7 81 59.3
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 2.1e-20 103.6 84 56.0
Duzib093G1009 Durio zibethinus HOM05D003612 ORTHO05D004323 1.0e-19 101.3 74 63.5
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 6.6e-19 98.6 165 35.2
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 1.6e-17 94.0 237 28.7
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 1.4e-16 90.9 227 26.9
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 1.5e-15 87.4 87 51.7
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 1.9e-13 80.5 106 41.5
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 3.5e-12 76.3 63 52.4
SEGI_36865 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 3.5e-12 76.3 78 53.8
PGSC0003DMG400013536 Solanum tuberosum HOM05D003612 ORTHO05D004323 3.5e-12 76.3 87 48.3
Lj1A1128T58 Lonicera japonica HOM05D003612 ORTHO05D004323 1.1e-10 71.2 44 72.7
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-08 63.9 125 30.4
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 3.1e-08 63.2 97 39.2
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 1.2e-07 61.2 108 34.3
Lj1A1127T48 Lonicera japonica HOM05D003612 ORTHO05D004323 2.6e-07 60.1 70 47.1
Peaxi162Scf00002g03215 Petunia axillaris HOM05D003612 ORTHO05D004323 7.6e-07 58.5 137 29.9
Actinidia09310 Actinidia chinensis HOM05D003612 ORTHO05D004323 2.9e-06 56.6 43 58.1


User provided reference genes

Program Settings