Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 9.1e-227 790.0 438 100.0
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 2.3e-100 370.2 428 54.0
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 1.2e-88 331.3 310 62.3
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 3.4e-88 329.7 403 50.6
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 4.9e-87 325.9 404 49.3
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 3.0e-84 316.6 399 48.6
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 1.9e-83 313.9 404 48.8
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 5.6e-83 312.4 399 48.9
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 1.8e-81 307.4 397 47.6
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 3.1e-81 306.6 394 48.5
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 1.5e-80 304.3 398 46.5
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 1.5e-80 304.3 400 48.2
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 2.9e-79 300.1 395 48.1
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 6.4e-79 298.9 281 60.5
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 1.1e-78 298.1 396 47.2
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 1.4e-78 297.7 401 45.1
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 2.4e-78 297.0 397 45.3
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 3.2e-78 296.6 401 46.4
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 6.0e-77 292.4 359 49.3
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 3.0e-76 290.0 401 43.9
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 1.9e-75 287.3 409 46.7
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 2.5e-75 287.0 396 47.7
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 5.6e-75 285.8 400 45.8
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 1.2e-74 284.6 398 46.0
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 3.6e-74 283.1 404 44.8
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 1.4e-73 281.2 400 46.2
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 5.2e-73 279.3 425 43.1
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 1.7e-71 274.2 436 43.3
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 4.9e-71 272.7 395 45.3
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 8.3e-71 271.9 435 43.0
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 2.4e-70 270.4 436 41.5
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 3.2e-70 270.0 436 42.7
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.2e-69 268.1 436 42.9
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.1e-69 267.3 434 42.9
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 2.7e-69 266.9 293 50.2
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 1.1e-67 261.5 402 41.5
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 1.1e-67 261.5 397 45.6
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 4.3e-67 259.6 399 45.1
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 5.6e-67 259.2 400 40.8
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 4.0e-65 253.1 399 43.4
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 7.6e-64 248.8 428 40.4
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.3e-63 248.1 289 52.2
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 4.2e-62 243.0 412 39.3
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 4.6e-61 239.6 260 56.5
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 6.0e-61 239.2 400 40.8
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 2.3e-60 237.3 396 43.4
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 5.1e-60 236.1 258 52.7
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 5.1e-60 236.1 403 41.7
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 6.6e-60 235.7 408 43.1
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 1.1e-59 235.0 356 44.1
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 2.5e-59 233.8 398 39.7
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 5.6e-59 232.6 349 43.8
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 5.6e-59 232.6 453 38.9
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 7.3e-59 232.3 260 52.3
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 7.3e-59 232.3 406 41.1
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 1.8e-57 227.6 402 40.0
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 5.3e-57 226.1 368 40.2
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 2.0e-56 224.2 400 39.5
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 5.8e-56 222.6 430 37.9
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 2.9e-55 220.3 406 37.9
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 4.9e-55 219.5 413 37.3
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 4.9e-55 219.5 427 37.5
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 4.9e-55 219.5 413 38.0
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 8.4e-55 218.8 217 59.0
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 9.3e-54 215.3 401 37.7
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 1.2e-53 214.9 400 37.0
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 2.7e-53 213.8 429 36.6
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 4.6e-53 213.0 397 41.8
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 2.3e-52 210.7 399 36.1
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 3.0e-52 210.3 237 54.0
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 3.9e-52 209.9 398 36.4
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 3.9e-52 209.9 425 39.3
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 6.6e-52 209.1 431 37.1
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 1.1e-51 208.4 397 40.6
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 1.5e-51 208.0 416 39.4
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 2.5e-51 207.2 421 37.3
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 2.5e-51 207.2 309 43.7
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 1.1e-49 201.8 355 42.3
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 1.4e-49 201.4 408 35.5
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 2.4e-49 200.7 434 36.6
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 5.3e-49 199.5 300 43.7
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 6.9e-49 199.1 432 35.4
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 2.2e-47 194.1 446 34.5
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 3.2e-46 190.3 244 49.2
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 5.4e-46 189.5 258 45.0
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 7.1e-46 189.1 214 53.7
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 1.2e-45 188.3 397 36.8
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 6.0e-45 186.0 448 34.2
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 7.9e-45 185.7 455 34.5
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 1.0e-44 185.3 407 33.7
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 5.1e-44 183.0 453 34.2
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 5.1e-44 183.0 196 55.1
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 6.7e-44 182.6 386 37.3
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 1.5e-43 181.4 407 33.4
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 4.3e-43 179.9 400 35.8
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 5.6e-43 179.5 433 35.6
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 1.6e-42 177.9 198 55.6
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 1.6e-42 177.9 381 37.3
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 3.7e-42 176.8 402 34.3
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 3.1e-41 173.7 290 43.1
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 9.0e-41 172.2 401 33.4
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 3.4e-40 170.2 271 43.2
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 1.3e-39 168.3 408 32.6
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 1.7e-39 167.9 408 32.8
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 9.3e-38 162.2 331 36.0
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 2.1e-34 151.0 142 62.0
MBI06_g29680_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.2e-32 145.2 140 60.7
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 4.5e-32 143.3 213 45.5
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 2.2e-31 141.0 288 36.5
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 5.0e-31 139.8 223 42.6
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 4.6e-29 133.3 285 35.4
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 3.9e-28 130.2 241 39.0
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 2.4e-25 120.9 437 28.8
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 3.1e-25 120.6 317 34.4
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 6.9e-25 119.4 323 28.5
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 1.7e-23 114.8 252 36.1
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 1.1e-22 112.1 111 59.5
CSS0016999 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 4.6e-21 106.7 80 76.2
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 3.1e-17 94.0 93 51.6
SHI13452 Sapria himalayana HOM05D005648 ORTHO05D007357 4.1e-17 93.6 95 57.9
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 3.8e-15 87.0 410 26.6
MBI18_g42710_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.1e-14 85.5 87 50.6
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 3.2e-14 84.0 104 45.2
SalBow3G1978 Salvia bowleyana HOM05D005648 ORTHO05D007357 3.2e-14 84.0 81 65.4
FAN10G0802 Fragaria x ananassa HOM05D005648 ORTHO05D007357 9.4e-14 82.4 80 63.8
MBI12_g03930_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D014274 1.8e-12 78.2 63 68.3
MBI17_g41096_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 3.0e-12 77.4 68 52.9
vmacro20941 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 2.0e-11 74.7 92 41.3
MBI19_g11759_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D002414 3.7e-10 70.5 66 54.5
MBI06_g27427_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 4.8e-10 70.1 71 53.5
CSS0009989 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 5.3e-09 66.6 76 47.4
Pp3c13_2040 Physcomitrium patens HOM05D049775 ORTHO05D315184 4.2e-06 57.0 235 26.4


User provided reference genes

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