Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.1e-213 746.5 404 100.0
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.6e-76 290.8 434 52.8
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 4.8e-65 252.7 405 50.4
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 2.0e-34 151.0 324 38.6
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 4.4e-34 149.8 484 36.2
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 2.2e-33 147.5 524 31.3
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 4.9e-33 146.4 305 42.3
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 4.1e-32 143.3 523 34.2
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 2.1e-31 141.0 525 34.3
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 2.3e-30 137.5 537 31.5
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 5.1e-30 136.3 471 32.5
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 8.6e-30 135.6 511 31.7
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 1.5e-29 134.8 348 37.6
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 1.9e-29 134.4 527 30.4
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 2.5e-29 134.0 407 36.1
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 2.5e-29 134.0 355 36.1
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 4.3e-29 133.3 344 36.9
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 9.5e-29 132.1 523 33.7
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 9.5e-29 132.1 324 36.4
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 3.6e-28 130.2 523 29.4
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 6.2e-28 129.4 345 35.7
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 3.1e-27 127.1 340 34.7
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 3.1e-27 127.1 353 34.6
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 2.0e-26 124.4 308 37.3
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.7e-25 121.3 347 34.6
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 6.4e-25 119.4 451 34.8
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 3.2e-24 117.1 521 31.9
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 1.6e-23 114.8 469 32.8
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 2.1e-23 114.4 515 30.7
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.7e-23 114.0 371 34.2
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 3.5e-23 113.6 373 34.0
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 3.5e-23 113.6 298 37.6
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 4.6e-23 113.2 188 45.2
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 6.0e-23 112.8 382 33.2
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 1.0e-22 112.1 201 42.8
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 1.0e-22 112.1 372 32.0
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.3e-22 110.9 371 33.2
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 6.6e-22 109.4 371 33.4
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 6.6e-22 109.4 293 36.9
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 2.5e-21 107.5 217 39.6
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 3.3e-21 107.1 429 35.9
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 4.3e-21 106.7 542 31.4
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 5.6e-21 106.3 281 35.6
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 7.3e-21 105.9 517 30.2
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 9.5e-21 105.5 446 30.9
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 9.5e-21 105.5 217 40.1
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 6.2e-20 102.8 361 31.3
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 2.4e-19 100.9 283 31.4
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 3.1e-19 100.5 383 32.6
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.1e-19 100.5 392 31.4
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 4.0e-19 100.1 487 28.7
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 1.2e-18 98.6 278 33.8
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 1.2e-18 98.6 278 33.8
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 1.5e-18 98.2 305 36.4
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 1.5e-18 98.2 295 35.3
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 4.4e-18 96.7 367 32.7
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 4.4e-18 96.7 305 32.5
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 1.7e-17 94.7 277 33.2
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 1.7e-17 94.7 209 38.3
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.2e-17 94.4 451 28.6
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 2.9e-17 94.0 338 33.1
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 2.9e-17 94.0 201 41.8
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 8.4e-17 92.4 352 32.4
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 8.4e-17 92.4 499 31.7
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 8.4e-17 92.4 590 28.5
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 8.4e-17 92.4 289 34.3
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 1.1e-16 92.0 477 29.1
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 1.9e-16 91.3 491 28.5
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 5.4e-16 89.7 278 34.2
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 7.1e-16 89.4 473 29.4
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 9.2e-16 89.0 607 25.9
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 1.6e-15 88.2 299 32.4
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 2.7e-15 87.4 474 29.1
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 3.5e-15 87.0 430 30.5
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.0e-14 85.5 532 26.3
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 1.7e-14 84.7 243 31.7
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.7e-14 84.7 428 31.3
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 3.0e-14 84.0 289 31.8
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 3.9e-14 83.6 278 33.8
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 5.1e-14 83.2 132 44.7
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 5.1e-14 83.2 496 27.8
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 5.1e-14 83.2 549 26.8
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 5.1e-14 83.2 228 34.2
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 6.6e-14 82.8 439 29.4
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 8.7e-14 82.4 197 38.6
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 8.7e-14 82.4 512 28.3
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 5.6e-13 79.7 564 27.3
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 7.3e-13 79.3 387 27.4
PSO782G3290 Papaver somniferum HOM05D057890 ORTHO05D004092 1.2e-12 78.6 206 37.9
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 1.6e-12 78.2 158 40.5
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 2.1e-12 77.8 164 38.4
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 2.8e-12 77.4 130 43.1
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 3.6e-12 77.0 159 38.4
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 3.6e-12 77.0 159 38.4
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 4.7e-12 76.6 299 31.8
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 4.7e-12 76.6 306 30.4
PSO782G3516 Papaver somniferum HOM05D064671 ORTHO05D004092 1.8e-11 74.7 265 33.2
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 4.0e-11 73.6 238 32.8
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 4.0e-11 73.6 419 30.3
PSO478G0660 Papaver somniferum HOM05D057890 ORTHO05D004092 5.3e-11 73.2 206 36.9
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 6.9e-11 72.8 456 27.6
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 9.0e-11 72.4 361 28.8
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 1.2e-10 72.0 250 33.6
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 1.5e-10 71.6 184 36.4
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 1.5e-10 71.6 233 33.5
FAN06G3443 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.5e-10 71.6 200 36.5
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 2.0e-10 71.2 298 31.5
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 2.6e-10 70.9 377 26.5
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 3.4e-10 70.5 431 30.4
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 4.4e-10 70.1 198 36.4
FvH4_7g29480 Fragaria vesca HOM05D013146 ORTHO05D004092 5.8e-10 69.7 200 36.0
PSO478G2886 Papaver somniferum HOM05D064671 ORTHO05D004092 7.6e-10 69.3 262 31.7
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 9.9e-10 68.9 159 37.7
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 1.7e-09 68.2 501 26.7
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 2.2e-09 67.8 166 38.0
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 6.4e-09 66.2 253 31.6
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 8.4e-09 65.9 212 34.4
Hund04742 Selenicereus undatus HOM05D004189 ORTHO05D004092 8.4e-09 65.9 172 36.6
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 1.4e-08 65.1 483 29.2
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 4.2e-08 63.5 438 26.5
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 7.1e-08 62.8 211 35.1
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.2e-07 62.0 500 25.8
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.2e-07 62.0 417 28.1
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 1.6e-07 61.6 359 29.5
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 1.6e-07 61.6 453 28.3
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 4.6e-07 60.1 414 28.7
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 6.0e-07 59.7 304 28.9
HanXRQChr06g0183811 Helianthus annuus HOM05D004189 ORTHO05D004092 7.8e-07 59.3 215 29.8
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 2.3e-06 57.8 167 33.5
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 3.0e-06 57.4 348 27.0
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 6.6e-06 56.2 167 32.9


User provided reference genes

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