Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 4.8e-82 307.8 154 100.0
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 2.2e-74 282.3 154 91.6
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 5.7e-67 257.7 155 85.2
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 7.5e-67 257.3 155 85.2
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 6.3e-66 254.2 154 83.8
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 6.3e-66 254.2 154 83.8
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 2.4e-65 252.3 157 81.5
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 3.1e-65 251.9 157 80.9
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 3.1e-65 251.9 154 83.1
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 4.1e-65 251.5 155 83.2
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 3.5e-64 248.4 158 82.3
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 1.3e-63 246.5 154 81.8
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 7.2e-62 240.7 153 80.4
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 7.2e-62 240.7 154 79.9
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 1.4e-60 236.5 162 77.8
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 1.4e-60 236.5 129 88.4
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 1.8e-60 236.1 172 73.8
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 3.0e-60 235.3 160 79.4
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 4.0e-60 235.0 156 79.5
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 6.8e-60 234.2 158 80.4
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 8.9e-60 233.8 160 77.5
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 1.5e-59 233.0 127 87.4
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 2.6e-59 232.3 154 76.6
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 3.4e-59 231.9 156 76.9
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 4.4e-59 231.5 158 77.8
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 7.5e-59 230.7 155 78.1
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 1.3e-58 229.9 152 77.0
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 2.9e-58 228.8 154 76.6
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 4.9e-58 228.0 155 76.1
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 6.3e-58 227.6 154 76.0
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 8.3e-58 227.3 160 74.4
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 1.4e-57 226.5 155 77.4
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 2.4e-57 225.7 153 77.1
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 4.1e-57 224.9 162 76.5
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 5.4e-57 224.6 161 75.2
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 7.0e-57 224.2 123 87.0
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 9.2e-57 223.8 155 76.1
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 9.2e-57 223.8 157 75.8
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 2.0e-56 222.6 154 73.4
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 2.7e-56 222.2 155 76.8
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.7e-56 222.2 160 74.4
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 2.7e-56 222.2 126 84.9
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 3.5e-56 221.9 154 76.6
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 4.6e-56 221.5 150 77.3
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 4.6e-56 221.5 148 77.7
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 5.9e-56 221.1 158 75.3
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 7.8e-56 220.7 167 73.7
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 1.0e-55 220.3 128 85.2
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 1.0e-55 220.3 157 72.0
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 1.7e-55 219.5 148 75.7
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 2.9e-55 218.8 128 84.4
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 3.9e-55 218.4 146 77.4
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 3.9e-55 218.4 149 77.2
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 5.0e-55 218.0 160 72.5
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 6.6e-55 217.6 128 83.6
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 8.6e-55 217.2 155 75.5
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 8.6e-55 217.2 160 71.9
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 1.1e-54 216.9 159 73.6
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.1e-54 216.9 125 85.6
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 1.5e-54 216.5 148 75.0
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 1.9e-54 216.1 157 74.5
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 2.5e-54 215.7 137 79.6
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 2.5e-54 215.7 157 74.5
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 3.3e-54 215.3 155 74.8
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 3.3e-54 215.3 157 75.2
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 5.6e-54 214.5 148 74.3
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 9.5e-54 213.8 151 72.2
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 9.5e-54 213.8 151 72.2
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 1.2e-53 213.4 137 78.1
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 1.2e-53 213.4 145 75.2
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 1.6e-53 213.0 151 72.2
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 1.6e-53 213.0 151 73.5
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 2.1e-53 212.6 158 72.8
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 2.1e-53 212.6 158 72.8
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 2.8e-53 212.2 152 72.4
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 3.6e-53 211.8 151 71.5
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.6e-53 211.8 137 77.4
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 3.6e-53 211.8 149 75.8
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 3.6e-53 211.8 149 75.8
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 3.6e-53 211.8 149 75.8
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 6.1e-53 211.1 176 67.6
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 8.0e-53 210.7 132 77.3
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.4e-52 209.9 137 77.4
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 1.4e-52 209.9 157 69.4
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 1.8e-52 209.5 127 78.7
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 1.8e-52 209.5 160 73.8
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 4.0e-52 208.4 151 72.2
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 5.2e-52 208.0 150 74.7
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 6.8e-52 207.6 151 70.2
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 8.9e-52 207.2 146 74.7
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 8.9e-52 207.2 155 72.9
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 1.2e-51 206.8 155 72.9
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 2.0e-51 206.1 151 70.2
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 3.4e-51 205.3 155 71.6
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 3.4e-51 205.3 124 83.1
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 7.5e-51 204.1 126 80.2
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 9.8e-51 203.8 155 71.0
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 2.2e-50 202.6 154 70.8
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 4.9e-50 201.4 155 70.3
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 1.1e-49 200.3 125 80.8
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 1.9e-49 199.5 151 68.9
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 2.4e-49 199.1 132 75.8
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 3.2e-49 198.7 151 69.5
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 3.2e-49 198.7 216 57.9
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 7.0e-49 197.6 118 83.1
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 7.0e-49 197.6 137 73.7
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 3.5e-48 195.3 116 83.6
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 4.6e-48 194.9 143 70.6
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 4.6e-48 194.9 168 67.3
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 1.3e-47 193.4 154 67.5
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.7e-47 193.0 119 78.2
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 2.3e-47 192.6 169 66.9
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 2.3e-47 192.6 106 89.6
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 3.0e-47 192.2 143 72.0
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 3.0e-47 192.2 105 90.5
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 1.1e-46 190.3 150 68.0
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.5e-46 189.9 203 57.1
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.5e-46 189.9 148 70.9
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 1.9e-46 189.5 117 79.5
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 2.5e-46 189.1 116 80.2
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 3.3e-46 188.7 149 70.5
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 5.6e-46 188.0 116 82.8
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 1.6e-45 186.4 116 80.2
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 2.8e-45 185.7 147 68.0
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 4.0e-44 181.8 154 65.6
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 4.0e-44 181.8 151 68.9
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 5.2e-44 181.4 190 57.4
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 6.8e-44 181.0 119 74.8
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 2.9e-42 175.6 143 67.8
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 3.7e-42 175.3 125 72.0
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 3.7e-42 175.3 155 58.7
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 4.9e-42 174.9 120 72.5
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 1.4e-41 173.3 105 82.9
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 4.1e-41 171.8 143 67.8
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.6e-40 169.9 137 66.4
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.6e-40 169.9 137 66.4
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 2.7e-40 169.1 118 67.8
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 1.0e-39 167.2 102 77.5
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.3e-39 166.8 137 65.7
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 3.9e-39 165.2 114 74.6
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 1.5e-38 163.3 95 82.1
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 3.6e-37 158.7 139 64.0
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 3.6e-37 158.7 144 60.4
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 3.6e-37 158.7 118 71.2
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 4.4e-35 151.8 127 61.4
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 2.2e-34 149.4 138 60.9
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 2.1e-32 142.9 76 93.4
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 7.3e-30 134.4 107 66.4
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 1.4e-28 130.2 133 54.1
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 4.9e-26 121.7 131 59.5
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 1.0e-23 114.0 83 75.9
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 1.9e-22 109.8 58 87.9
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 2.5e-22 109.4 120 47.5
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 7.3e-22 107.8 74 78.4
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 4.8e-21 105.1 60 80.0
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 1.8e-20 103.2 75 66.7
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 5.3e-20 101.7 92 63.0
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 1.5e-19 100.1 75 65.3
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 2.0e-19 99.8 75 65.3
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 4.4e-19 98.6 60 80.0
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 6.6e-15 84.7 47 83.0
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 1.8e-12 76.6 132 35.6
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 2.0e-11 73.2 140 40.0
Cfa022890 Carpinus fangiana HOM05D004437 ORTHO05D037942 1.9e-09 66.6 156 31.4
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 2.1e-08 63.2 39 71.8


User provided reference genes

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