Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01054 Nelumbo nucifera HOM05D004859 ORTHO05D005807 2.3e-27 124.8 60 100.0
Sc06g0005050 Simmondsia chinensis HOM05D004859 ORTHO05D005807 1.2e-20 102.4 56 83.9
Gohir.A05G391600 Gossypium hirsutum HOM05D004859 ORTHO05D005807 2.0e-20 101.7 56 83.9
ClCG03G010710 Citrullus lanatus HOM05D004859 ORTHO05D005807 2.7e-20 101.3 56 85.7
MELO3C010059.2 Cucumis melo HOM05D004859 ORTHO05D005807 2.7e-20 101.3 56 85.7
Sc16g0010390 Simmondsia chinensis HOM05D004859 ORTHO05D005807 2.7e-20 101.3 56 83.9
Gohir.A13G154200 Gossypium hirsutum HOM05D004859 ORTHO05D005807 3.5e-20 100.9 56 83.9
Gohir.D13G158900 Gossypium hirsutum HOM05D004859 ORTHO05D005807 3.5e-20 100.9 56 83.9
Gorai.013G179600 Gossypium raimondii HOM05D004859 ORTHO05D005807 3.5e-20 100.9 56 83.9
COL.COLO4_19821 Corchorus olitorius HOM05D004859 ORTHO05D005807 4.6e-20 100.5 56 82.1
CiPaw.07G080000 Carya illinoinensis HOM05D004859 ORTHO05D005807 6.0e-20 100.1 56 80.4
Glyma.18G241900 Glycine max HOM05D004859 ORTHO05D005807 6.0e-20 100.1 56 80.4
Gohir.D04G025700 Gossypium hirsutum HOM05D004859 ORTHO05D005807 6.0e-20 100.1 56 82.1
Gorai.012G028300 Gossypium raimondii HOM05D004859 ORTHO05D005807 6.0e-20 100.1 56 82.1
TAR629G2726 Trochodendron aralioides HOM05D004859 ORTHO05D005807 6.0e-20 100.1 56 80.4
CDE12G0839 Ceratophyllum demersum HOM05D004859 ORTHO05D005807 7.8e-20 99.8 56 80.4
Duzib177G0866 Durio zibethinus HOM05D004859 ORTHO05D005807 7.8e-20 99.8 56 82.1
Hma1.2p1_0171F.1_g075510 Hydrangea macrophylla HOM05D004859 ORTHO05D005807 7.8e-20 99.8 56 80.4
THA.LOC104827174 Tarenaya hassleriana HOM05D004859 ORTHO05D005807 7.8e-20 99.8 56 82.1
Nn7g37400 Nelumbo nucifera HOM05D004859 ORTHO05D005807 1.0e-19 99.4 56 80.4
CsaV3_1G044540 Cucumis sativus L. HOM05D004859 ORTHO05D005807 1.3e-19 99.0 56 83.9
Phvul.008G054200 Phaseolus vulgaris HOM05D004859 ORTHO05D005807 1.3e-19 99.0 56 80.4
Cfa006265 Carpinus fangiana HOM05D004859 ORTHO05D005807 1.7e-19 98.6 56 80.4
Duzib128G0817 Durio zibethinus HOM05D004859 ORTHO05D005807 1.7e-19 98.6 56 80.4
Gohir.A08G225000 Gossypium hirsutum HOM05D004859 ORTHO05D005807 1.7e-19 98.6 56 78.6
Gorai.004G261900 Gossypium raimondii HOM05D004859 ORTHO05D005807 1.7e-19 98.6 56 78.6
THA.LOC104802953 Tarenaya hassleriana HOM05D004859 ORTHO05D005807 1.7e-19 98.6 56 78.6
Aqoxy7G00303 Aquilegia oxysepala HOM05D004859 ORTHO05D005807 2.3e-19 98.2 56 76.8
CSS0011817 Camellia sinensis var. sinensis HOM05D004859 ORTHO05D005807 2.3e-19 98.2 56 80.4
CANSAT54G1839 Cannabis sativa HOM05D004859 ORTHO05D005807 2.3e-19 98.2 56 78.6
Glyma.09G250600 Glycine max HOM05D004859 ORTHO05D005807 2.3e-19 98.2 56 76.8
Gohir.D08G245400 Gossypium hirsutum HOM05D004859 ORTHO05D005807 2.3e-19 98.2 56 78.6
MBI18_g38869_MAGBIO Magnolia biondii HOM05D004859 ORTHO05D005807 2.3e-19 98.2 56 78.6
TWI18G1000 Tripterygium wilfordii HOM05D004859 ORTHO05D005807 2.3e-19 98.2 56 78.6
Lalb_Chr03g0038491 Lupinus albus HOM05D004859 ORTHO05D005807 3.0e-19 97.8 56 78.6
Thecc.05G199300 Theobroma cacao HOM05D004859 ORTHO05D005807 3.0e-19 97.8 56 78.6
DCAR_024584 Daucus carota HOM05D004859 ORTHO05D005807 3.9e-19 97.4 56 76.8
MD04G1244600 Malus domestica HOM05D004859 ORTHO05D005807 3.9e-19 97.4 56 80.4
MD12G1260500 Malus domestica HOM05D004859 ORTHO05D005807 3.9e-19 97.4 56 80.4
Prupe.6G361200 Prunus persica HOM05D004859 ORTHO05D005807 3.9e-19 97.4 56 80.4
Sed0011478 Sechium edule HOM05D004859 ORTHO05D005807 3.9e-19 97.4 56 80.4
ECA238G2179 Erigeron canadensis HOM05D004859 ORTHO05D005807 5.0e-19 97.1 56 78.6
Lsat_1_v5_gn_8_2360 Lactuca sativa HOM05D004859 ORTHO05D005807 5.0e-19 97.1 56 78.6
Nn1g09361 Nelumbo nucifera HOM05D004859 ORTHO05D005807 5.0e-19 97.1 52 86.5
HPP92_025926 Vanilla planifolia HOM05D004859 ORTHO05D005807 5.0e-19 97.1 56 82.1
VMungo1383G1359 Vigna mungo HOM05D004859 ORTHO05D005807 5.0e-19 97.1 56 80.4
FvH4_6g00510 Fragaria vesca HOM05D004859 ORTHO05D005807 6.6e-19 96.7 56 78.6
FAN05G4796 Fragaria x ananassa HOM05D004859 ORTHO05D005807 6.6e-19 96.7 56 78.6
FAN09G3430 Fragaria x ananassa HOM05D004859 ORTHO05D005807 6.6e-19 96.7 56 78.6
FAN14G1059 Fragaria x ananassa HOM05D004859 ORTHO05D005807 6.6e-19 96.7 56 78.6
Lalb_Chr01g0020391 Lupinus albus HOM05D004859 ORTHO05D005807 6.6e-19 96.7 56 78.6
Potri.019G053500 Populus trichocarpa HOM05D004859 ORTHO05D005807 6.6e-19 96.7 56 78.6
QL01p048380 Quercus lobata HOM05D004859 ORTHO05D005807 6.6e-19 96.7 56 80.4
RcHm_v2.0_Chr3g0447891 Rosa chinensis HOM05D004859 ORTHO05D005807 6.6e-19 96.7 56 78.6
Cc09_g03620 Coffea canephora HOM05D004859 ORTHO05D005807 8.6e-19 96.3 56 80.4
Haze_04552 Corylus avellana HOM05D004859 ORTHO05D005807 8.6e-19 96.3 56 78.6
HanXRQChr11g0333601 Helianthus annuus HOM05D004859 ORTHO05D005807 8.6e-19 96.3 56 78.6
Lj1g0018632 Lotus japonicus HOM05D004859 ORTHO05D005807 8.6e-19 96.3 56 75.0
Atru.chr12.1788 Acer truncatum HOM05D004859 ORTHO05D005807 1.5e-18 95.5 56 78.6
BcaC05g30510 Brassica carinata HOM05D004859 ORTHO05D005807 1.5e-18 95.5 56 78.6
C09p75910 Brassica napus HOM05D004859 ORTHO05D005807 1.5e-18 95.5 56 78.6
Solyc04g056350.1 Solanum lycopersicum HOM05D004859 ORTHO05D005807 1.5e-18 95.5 56 78.6
Sopen04g025250 Solanum pennellii HOM05D004859 ORTHO05D005807 1.5e-18 95.5 56 78.6
CAN.G217.12 Capsicum annuum HOM05D004859 ORTHO05D005807 1.9e-18 95.1 56 78.6
PGR031G2676 Punica granatum HOM05D004859 ORTHO05D005807 1.9e-18 95.1 56 78.6
PGSC0003DMG400007259 Solanum tuberosum HOM05D004859 ORTHO05D005807 1.9e-18 95.1 56 76.8
Ca_07986_v3 Cicer arietinum L. HOM05D004859 ORTHO05D005807 2.5e-18 94.7 56 76.8
Eucgr.H01388 Eucalyptus grandis HOM05D004859 ORTHO05D005807 2.5e-18 94.7 56 76.8
Potri.013G086400 Populus trichocarpa HOM05D004859 ORTHO05D005807 2.5e-18 94.7 56 75.0
GSVIVG01019111001 Vitis vinifera HOM05D004859 ORTHO05D005807 2.5e-18 94.7 56 80.4
Aa31LG5G13260 Aethionema arabicum HOM05D004859 ORTHO05D005807 3.3e-18 94.4 56 76.8
AL3G12200 Arabidopsis lyrata HOM05D004859 ORTHO05D005807 3.3e-18 94.4 56 76.8
AT3G02790 Arabidopsis thaliana HOM05D004859 ORTHO05D005807 3.3e-18 94.4 56 76.8
Carub.0003s0189 Capsella rubella HOM05D004859 ORTHO05D005807 3.3e-18 94.4 56 76.8
Sabra13G0077700 Salix brachista HOM05D004859 ORTHO05D005807 3.3e-18 94.4 56 75.0
Sp3g01820 Schrenkiella parvula HOM05D004859 ORTHO05D005807 3.3e-18 94.4 56 76.8
unitig_749.g13492 Utricularia gibba HOM05D004859 ORTHO05D005807 3.3e-18 94.4 56 78.6
Aa31LG11G13190 Aethionema arabicum HOM05D004859 ORTHO05D005807 4.3e-18 94.0 55 78.2
BcaC05g30507 Brassica carinata HOM05D004859 ORTHO05D005807 4.3e-18 94.0 56 76.8
CSS0045397 Camellia sinensis var. sinensis HOM05D004859 ORTHO05D005807 4.3e-18 94.0 56 76.8
CANSAT35G0417 Cannabis sativa HOM05D004859 ORTHO05D005807 4.3e-18 94.0 55 80.0
CARHR076800 Cardamine hirsuta HOM05D004859 ORTHO05D005807 4.3e-18 94.0 56 76.8
SEGI_19955 Sequoiadendron giganteum HOM05D004859 ORTHO05D005807 4.3e-18 94.0 56 75.0
Cpa.g.sc39.7 Carica papaya HOM05D004859 ORTHO05D005807 5.6e-18 93.6 56 80.4
DCAR_029983 Daucus carota HOM05D004859 ORTHO05D005807 5.6e-18 93.6 56 76.8
ECA233G5366 Erigeron canadensis HOM05D004859 ORTHO05D005807 5.6e-18 93.6 56 75.0
Actinidia38902 Actinidia chinensis HOM05D004859 ORTHO05D005807 7.3e-18 93.2 56 76.8
Oeu062049.1 Olea europaea HOM05D004859 ORTHO05D005807 7.3e-18 93.2 56 76.8
unitig_26.g9580 Utricularia gibba HOM05D000798 ORTHO05D000659 7.3e-18 93.2 56 76.8
Ah.06g195490 Amaranthus hybridus HOM05D004859 ORTHO05D005807 9.5e-18 92.8 56 75.0
A02p03550 Brassica napus HOM05D004859 ORTHO05D005807 9.5e-18 92.8 56 75.0
A05p44330 Brassica napus HOM05D004859 ORTHO05D005807 9.5e-18 92.8 56 76.8
BraA06t23289Z Brassica rapa HOM05D004859 ORTHO05D005807 9.5e-18 92.8 56 76.8
SHI13720 Sapria himalayana HOM05D004859 ORTHO05D005807 9.5e-18 92.8 56 76.8
BcaB01g04980 Brassica carinata HOM05D004859 ORTHO05D005807 1.2e-17 92.4 56 75.0
BcaC03g18492 Brassica carinata HOM05D004859 ORTHO05D005807 1.2e-17 92.4 56 75.0
A03p07800 Brassica napus HOM05D004859 ORTHO05D005807 1.2e-17 92.4 56 75.0
A10p22730 Brassica napus HOM05D004859 ORTHO05D005807 1.2e-17 92.4 56 75.0
BolC2t06754H Brassica oleracea HOM05D004859 ORTHO05D005807 1.2e-17 92.4 56 75.0
BolC3t13398H Brassica oleracea HOM05D004859 ORTHO05D005807 1.2e-17 92.4 56 75.0
BraA02t05326Z Brassica rapa HOM05D004859 ORTHO05D005807 1.2e-17 92.4 56 75.0
BraA03t10107Z Brassica rapa HOM05D004859 ORTHO05D005807 1.2e-17 92.4 56 75.0
BraA10t44336Z Brassica rapa HOM05D004859 ORTHO05D005807 1.2e-17 92.4 56 75.0
Thhalv10015095m.g Eutrema salsugineum HOM05D004859 ORTHO05D005807 1.2e-17 92.4 56 75.0
Manes.12G005900 Manihot esculenta HOM05D004859 ORTHO05D005807 1.2e-17 92.4 56 75.0
SalBow6G1022 Salvia bowleyana HOM05D004859 ORTHO05D005807 1.2e-17 92.4 56 76.8
Migut.F02136 Erythranthe guttata HOM05D004859 ORTHO05D005807 1.6e-17 92.0 56 75.0
Medtr7g079990 Medicago truncatula HOM05D004859 ORTHO05D005807 1.6e-17 92.0 56 75.0
Rhsim09G0129900 Rhododendron simsii HOM05D004859 ORTHO05D005807 1.6e-17 92.0 56 75.0
TPR.G30708 Trifolium pratense HOM05D004859 ORTHO05D005807 1.6e-17 92.0 56 75.0
TWI36G0708 Tripterygium wilfordii HOM05D004859 ORTHO05D005807 1.6e-17 92.0 56 75.0
ATR0568G125 Amborella trichopoda HOM05D004859 ORTHO05D005807 2.1e-17 91.7 56 76.8
BolC5t35066H Brassica oleracea HOM05D004859 ORTHO05D005807 2.1e-17 91.7 56 76.8
Ciclev10013411m.g Citrus clementina HOM05D004859 ORTHO05D005807 2.1e-17 91.7 56 73.2
Manes.13G005600 Manihot esculenta HOM05D004859 ORTHO05D005807 2.1e-17 91.7 56 73.2
Mapoly0153s0037 Marchantia polymorpha HOM05D004859 ORTHO05D005807 2.1e-17 91.7 56 76.8
Oeu020252.1 Olea europaea HOM05D004859 ORTHO05D005807 2.1e-17 91.7 56 75.0
PSO675G0300 Papaver somniferum HOM05D004859 ORTHO05D005807 2.1e-17 91.7 56 75.0
PSO675G8596 Papaver somniferum HOM05D004859 ORTHO05D005807 2.1e-17 91.7 56 75.0
BcaB08g36850 Brassica carinata HOM05D004859 ORTHO05D005807 2.8e-17 91.3 56 73.2
BcaC04g18876 Brassica carinata HOM05D004859 ORTHO05D005807 2.8e-17 91.3 56 73.2
C09p60710 Brassica napus HOM05D004859 ORTHO05D005807 2.8e-17 91.3 56 73.2
BolC9t58902H Brassica oleracea HOM05D004859 ORTHO05D005807 2.8e-17 91.3 56 73.2
Lsat_1_v5_gn_2_18260 Lactuca sativa HOM05D004859 ORTHO05D005807 2.8e-17 91.3 55 76.4
Nitab4.5_0000083g0160 Nicotiana tabacum HOM05D004859 ORTHO05D005807 2.8e-17 91.3 56 75.0
Peaxi162Scf00344g00092 Petunia axillaris HOM05D004859 ORTHO05D005807 2.8e-17 91.3 56 73.2
Sp6g27710 Schrenkiella parvula HOM05D004859 ORTHO05D005807 2.8e-17 91.3 56 73.2
AL6G27410 Arabidopsis lyrata HOM05D004859 ORTHO05D005807 3.6e-17 90.9 55 74.5
AT5G16470 Arabidopsis thaliana HOM05D004859 ORTHO05D005807 3.6e-17 90.9 55 74.5
Carub.0006s1467 Capsella rubella HOM05D004859 ORTHO05D005807 3.6e-17 90.9 55 74.5
CARHR196760 Cardamine hirsuta HOM05D004859 ORTHO05D005807 3.6e-17 90.9 55 74.5
Nitab4.5_0001435g0020 Nicotiana tabacum HOM05D004859 ORTHO05D005807 6.2e-17 90.1 56 73.2
EL10Ac4g09966 Beta vulgaris HOM05D004859 ORTHO05D005807 1.1e-16 89.4 56 73.2
AUR62000312 Chenopodium quinoa HOM05D004859 ORTHO05D005807 1.1e-16 89.4 56 71.4
AUR62006657 Chenopodium quinoa HOM05D004859 ORTHO05D005807 1.1e-16 89.4 56 71.4
Pp3c9_1130 Physcomitrium patens HOM05D004859 ORTHO05D005807 1.1e-16 89.4 56 75.0
HanXRQChr09g0244001 Helianthus annuus HOM05D004859 ORTHO05D005807 1.8e-16 88.6 56 73.2
Psat3g138280 Pisum sativum HOM05D004859 ORTHO05D005807 1.8e-16 88.6 55 72.7
SMO361G0285 Selaginella moellendorffii HOM05D004859 ORTHO05D005807 1.8e-16 88.6 56 75.0
Pp3c26_1250 Physcomitrium patens HOM05D004859 ORTHO05D005807 5.2e-16 87.0 56 73.2
Os06g0708600 Oryza sativa ssp. japonica HOM05D004859 ORTHO05D005807 6.8e-16 86.7 56 75.0
Zm00001eb272650 Zea mays HOM05D004859 ORTHO05D005807 6.8e-16 86.7 56 76.8
Pp3c15_1090 Physcomitrium patens HOM05D004859 ORTHO05D005807 2.0e-15 85.1 56 71.4
Zm00001eb227470 Zea mays HOM05D004859 ORTHO05D005807 2.0e-15 85.1 56 75.0
VMungo0464G0653 Vigna mungo HOM05D004859 ORTHO05D005807 9.2e-13 76.3 55 65.5
RcHm_v2.0_Chr1g0316641 Rosa chinensis HOM05D004859 ORTHO05D005807 6.0e-12 73.6 56 58.9
Cre09.g416500 Chlamydomonas reinhardtii HOM05D004859 ORTHO05D005807 8.1e-09 63.2 51 62.7
PRCOL_00002520 Prasinoderma coloniale HOM05D004859 ORTHO05D005807 1.1e-08 62.8 56 57.1
Dinv29105 Davidia involucrata HOM05D004859 ORTHO05D005807 2.2e-06 55.1 28 96.4
BcaB08g36851 Brassica carinata HOM05D004859 ORTHO05D005807 8.4e-06 53.1 32 78.1


User provided reference genes

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