Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00557 Nelumbo nucifera HOM05D001200 ORTHO05D009713 4.2e-32 141.0 82 100.0
ATCG01060 Arabidopsis thaliana HOM05D001200 ORTHO05D009713 1.7e-30 135.6 82 95.1
BolSC29t60505H Brassica oleracea HOM05D001200 ORTHO05D009713 1.7e-30 135.6 82 95.1
BolSC35t60703H Brassica oleracea HOM05D001200 ORTHO05D009713 1.7e-30 135.6 82 95.1
BolSC37t60792H Brassica oleracea HOM05D001200 ORTHO05D009713 1.7e-30 135.6 82 95.1
BolSC45t60910H Brassica oleracea HOM05D001200 ORTHO05D009713 1.7e-30 135.6 82 92.7
BolSC46t60959H Brassica oleracea HOM05D001200 ORTHO05D009713 1.7e-30 135.6 82 95.1
BolSC49t61142H Brassica oleracea HOM05D001200 ORTHO05D009713 1.7e-30 135.6 82 95.1
BraSC103t45428Z Brassica rapa HOM05D001200 ORTHO05D009713 1.7e-30 135.6 82 95.1
BraSC143t45661Z Brassica rapa HOM05D001200 ORTHO05D009713 1.7e-30 135.6 82 95.1
BraSC179t45775Z Brassica rapa HOM05D001200 ORTHO05D009713 1.7e-30 135.6 82 95.1
BraSC59t46550Z Brassica rapa HOM05D001200 ORTHO05D009713 1.7e-30 135.6 82 95.1
CAN.G1526.3 Capsicum annuum HOM05D001200 ORTHO05D009713 1.7e-30 135.6 82 95.1
CAN.G1526.8 Capsicum annuum HOM05D001200 ORTHO05D009713 1.7e-30 135.6 82 95.1
CAN.G278.4 Capsicum annuum HOM05D001200 ORTHO05D009713 1.7e-30 135.6 82 95.1
Migut.D01253 Erythranthe guttata HOM05D001200 ORTHO05D009713 1.7e-30 135.6 82 95.1
Gohir.1Z049631 Gossypium hirsutum HOM05D001200 ORTHO05D009713 1.7e-30 135.6 82 95.1
Gohir.A02G134400 Gossypium hirsutum HOM05D001200 ORTHO05D009713 1.7e-30 135.6 82 95.1
Gohir.A09G046200 Gossypium hirsutum HOM05D001200 ORTHO05D009713 1.7e-30 135.6 82 95.1
Hma1.2p1_0382F.1_g140210 Hydrangea macrophylla HOM05D001200 ORTHO05D009713 1.7e-30 135.6 82 95.1
Nn064s42211 Nelumbo nucifera HOM05D001200 ORTHO05D009713 1.7e-30 135.6 82 95.1
PSO548G0036 Papaver somniferum HOM05D001200 ORTHO05D009713 1.7e-30 135.6 82 95.1
PGR111G0008 Punica granatum HOM05D001200 ORTHO05D009713 1.7e-30 135.6 82 95.1
RcHm_v2.0_Chr5g0017221 Rosa chinensis HOM05D001200 ORTHO05D009713 1.7e-30 135.6 82 95.1
RcHm_v2.0_Chr5g0043041 Rosa chinensis HOM05D001200 ORTHO05D009713 1.7e-30 135.6 82 95.1
RcHm_v2.0_CPg0502781 Rosa chinensis HOM05D001200 ORTHO05D009713 1.7e-30 135.6 82 95.1
HanXRQChr00c0336g0573651 Helianthus annuus HOM05D001200 ORTHO05D009713 3.0e-30 134.8 82 93.9
HanXRQChr09g0246671 Helianthus annuus HOM05D001200 ORTHO05D009713 3.0e-30 134.8 82 93.9
Lsat_1_v5_gn_1_14180 Lactuca sativa HOM05D001200 ORTHO05D009713 3.0e-30 134.8 82 93.9
EL10As15g24099 Beta vulgaris HOM05D001200 ORTHO05D009778 5.1e-30 134.0 82 93.9
Nn3g20217 Nelumbo nucifera HOM05D001200 ORTHO05D009713 6.6e-30 133.7 82 92.7
CAN.G965.7 Capsicum annuum HOM05D001200 ORTHO05D009713 8.7e-30 133.3 82 93.9
C04p22670 Brassica napus HOM05D001200 ORTHO05D009713 1.1e-29 132.9 82 92.7
BolC9t56926H Brassica oleracea HOM05D001200 ORTHO05D009713 1.9e-29 132.1 82 91.5
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 4.3e-29 131.0 79 94.9
DCAR_032537 Daucus carota HOM05D001200 ORTHO05D009713 1.3e-28 129.4 82 91.5
CARHR282430 Cardamine hirsuta HOM05D001200 ORTHO05D009713 2.1e-28 128.6 82 92.7
Gohir.D06G133600 Gossypium hirsutum HOM05D001200 ORTHO05D009713 2.1e-28 128.6 82 87.8
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 2.1e-28 128.6 82 91.5
HanXRQChr17g0557761 Helianthus annuus HOM05D001200 ORTHO05D002731 4.8e-28 127.5 78 93.6
Oeu043656.1 Olea europaea HOM05D001200 ORTHO05D009713 4.8e-28 127.5 82 89.0
Gorai.009G377500 Gossypium raimondii HOM05D001200 ORTHO05D009713 6.2e-28 127.1 82 89.0
HanXRQChr02g0038661 Helianthus annuus HOM05D001200 ORTHO05D009713 6.2e-28 127.1 82 87.8
HanXRQChr09g0244731 Helianthus annuus HOM05D001200 ORTHO05D009713 8.1e-28 126.7 77 93.5
Lalb_Chr07g0191761 Lupinus albus HOM05D001200 ORTHO05D002731 8.1e-28 126.7 77 94.8
arahy.Tifrunner.gnm1.ann1.USFH3V Arachis hypogaea HOM05D001200 ORTHO05D009713 1.4e-27 125.9 81 88.9
Glyma.18G155300 Glycine max HOM05D001200 ORTHO05D009713 2.4e-27 125.2 82 70.7
Medtr4g050960 Medicago truncatula HOM05D001200 ORTHO05D009713 3.1e-27 124.8 82 91.5
Sed0023939 Sechium edule HOM05D001200 ORTHO05D009713 5.3e-27 124.0 82 73.2
Cpa.g.sc63.22 Carica papaya HOM05D001200 ORTHO05D009713 1.5e-26 122.5 82 91.5
HanXRQChr00c0504g0575301 Helianthus annuus HOM05D001200 ORTHO05D009713 2.0e-26 122.1 77 92.2
C09p40340 Brassica napus HOM05D001200 ORTHO05D009713 2.6e-26 121.7 80 87.5
Medtr4g006120 Medicago truncatula HOM05D001200 ORTHO05D002731 2.9e-25 118.2 81 87.7
Medtr7g021720 Medicago truncatula HOM05D001200 ORTHO05D002731 2.9e-25 118.2 81 87.7
Hund27630 Selenicereus undatus HOM05D001200 ORTHO05D009713 3.8e-25 117.9 81 86.4
Hund28597 Selenicereus undatus HOM05D001200 ORTHO05D009713 3.8e-25 117.9 81 86.4
Os09g0485201 Oryza sativa ssp. japonica HOM05D001200 ORTHO05D009713 3.2e-24 114.8 82 80.5
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 5.4e-24 114.0 74 90.5
Hund30643 Selenicereus undatus HOM05D001200 ORTHO05D009713 5.4e-24 114.0 75 90.7
Hund27883 Selenicereus undatus HOM05D001200 ORTHO05D002731 7.1e-24 113.6 76 89.5
Hund28330 Selenicereus undatus HOM05D001200 ORTHO05D002731 7.1e-24 113.6 76 89.5
Hund28851 Selenicereus undatus HOM05D001200 ORTHO05D009713 7.1e-24 113.6 76 89.5
Hund29433 Selenicereus undatus HOM05D001200 ORTHO05D009713 7.1e-24 113.6 76 89.5
Hund30513 Selenicereus undatus HOM05D001200 ORTHO05D002731 7.1e-24 113.6 76 89.5
Gohir.A09G017925 Gossypium hirsutum HOM05D001200 ORTHO05D009713 1.2e-23 112.8 72 90.3
BraSC25t45909Z Brassica rapa HOM05D001200 ORTHO05D009713 3.5e-23 111.3 71 90.1
Potri.019G014344 Populus trichocarpa HOM05D001200 ORTHO05D009713 1.3e-22 109.4 82 64.6
Nitab4.5_0007979g0060 Nicotiana tabacum HOM05D001200 ORTHO05D009778 3.0e-22 108.2 69 72.5
Nn1g08635 Nelumbo nucifera HOM05D001200 ORTHO05D009713 8.7e-22 106.7 78 82.1
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 2.5e-21 105.1 69 89.9
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 2.5e-21 105.1 69 89.9
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 2.5e-21 105.1 69 89.9
arahy.Tifrunner.gnm1.ann1.WH1VZM Arachis hypogaea HOM05D001200 ORTHO05D009713 3.3e-21 104.8 81 64.2
HanXRQChr02g0038701 Helianthus annuus HOM05D001200 ORTHO05D009713 5.6e-21 104.0 70 88.6
BolSC29t60545H Brassica oleracea HOM05D001200 ORTHO05D009713 3.7e-20 101.3 47 93.6
BolSC35t60693H Brassica oleracea HOM05D001200 ORTHO05D009713 3.7e-20 101.3 47 93.6
BolSC44t60821H Brassica oleracea HOM05D001200 ORTHO05D009713 3.7e-20 101.3 47 93.6
HanXRQChr00c0690g0576761 Helianthus annuus HOM05D001200 ORTHO05D002731 3.7e-20 101.3 47 93.6
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 3.7e-20 101.3 47 93.6
HanXRQChr05g0152431 Helianthus annuus HOM05D001200 ORTHO05D002731 3.7e-20 101.3 47 93.6
HanXRQChr09g0258521 Helianthus annuus HOM05D001200 ORTHO05D002731 3.7e-20 101.3 47 93.6
HanXRQChr11g0323741 Helianthus annuus HOM05D001200 ORTHO05D002731 3.7e-20 101.3 47 93.6
HanXRQChr17g0569731 Helianthus annuus HOM05D001200 ORTHO05D009778 3.7e-20 101.3 47 93.6
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 3.7e-20 101.3 47 93.6
Sed0012820 Sechium edule HOM05D001200 ORTHO05D009713 1.1e-19 99.8 82 80.5
GSVIVG01034636001 Vitis vinifera HOM05D001200 ORTHO05D009713 1.8e-19 99.0 46 93.5
SMO086G0058 Selaginella moellendorffii HOM05D001200 ORTHO05D009713 3.1e-19 98.2 81 59.3
CsaV3_UNG210150 Cucumis sativus L. HOM05D001200 ORTHO05D009713 6.9e-19 97.1 69 82.6
TPR.G17259 Trifolium pratense HOM05D000404 ORTHO05D009713 1.5e-18 95.9 47 89.4
C09p40360 Brassica napus HOM05D001200 ORTHO05D009713 3.4e-18 94.7 82 59.8
BolC9t56924H Brassica oleracea HOM05D001200 ORTHO05D009713 3.4e-18 94.7 82 59.8
HanXRQChr13g0388461 Helianthus annuus HOM05D001200 ORTHO05D009713 3.4e-18 94.7 47 89.4
HanXRQChr03g0073101 Helianthus annuus HOM05D001200 ORTHO05D002731 4.5e-18 94.4 47 89.4
C07p33440 Brassica napus HOM05D001200 ORTHO05D009713 1.7e-17 92.4 82 59.8
C09p24630 Brassica napus HOM05D001200 ORTHO05D009713 1.7e-17 92.4 82 59.8
C09p40200 Brassica napus HOM05D001200 ORTHO05D009713 1.7e-17 92.4 82 59.8
Hund24329 Selenicereus undatus HOM05D001200 ORTHO05D009713 3.8e-17 91.3 82 56.1
BolC2t10595H Brassica oleracea HOM05D001200 ORTHO05D009713 5.5e-16 87.4 38 97.4
Gohir.A05G291020 Gossypium hirsutum HOM05D001163 ORTHO05D001769 2.5e-13 78.6 33 100.0
AL9U11952 Arabidopsis lyrata HOM05D001200 ORTHO05D009713 9.6e-13 76.6 54 64.8
TPR.G30364 Trifolium pratense HOM05D001200 ORTHO05D009713 1.3e-12 76.3 57 63.2
HanXRQChr14g0428461 Helianthus annuus HOM05D001200 ORTHO05D009713 1.6e-12 75.9 55 63.6
Gorai.004G082100 Gossypium raimondii HOM05D001200 ORTHO05D009713 2.1e-12 75.5 55 63.6
MELO3C027236.2 Cucumis melo HOM05D001200 ORTHO05D009713 4.8e-12 74.3 55 63.6
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 4.8e-12 74.3 36 88.9
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 1.1e-11 73.2 34 91.2
MELO3C029829.2 Cucumis melo HOM05D001200 ORTHO05D009713 4.0e-11 71.2 55 60.0
CARHR258570 Cardamine hirsuta HOM05D001200 ORTHO05D009713 5.3e-11 70.9 55 61.8
Gohir.D08G077250 Gossypium hirsutum HOM05D001200 ORTHO05D009713 6.9e-11 70.5 55 61.8
HanXRQChr08g0211961 Helianthus annuus HOM05D001200 ORTHO05D002731 6.9e-11 70.5 40 77.5
CAN.G8.22 Capsicum annuum HOM05D001200 ORTHO05D009713 1.5e-10 69.3 55 61.8
TPR.G6643 Trifolium pratense HOM05D001044 ORTHO05D008486 1.3e-09 66.2 52 59.6
MBI16_g21734_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D009778 1.9e-08 62.4 30 90.0
Lalb_Chr13g0292811 Lupinus albus HOM05D001200 ORTHO05D009713 2.1e-07 58.9 47 55.3
Solyc02g011760.1 Solanum lycopersicum HOM05D001200 ORTHO05D009713 7.9e-07 57.0 49 57.1
Lalb_Chr18g0049421 Lupinus albus HOM05D001200 ORTHO05D009713 1.0e-06 56.6 50 60.0
HanXRQChr08g0213671 Helianthus annuus HOM05D001200 ORTHO05D009713 3.9e-06 54.7 54 48.1


User provided reference genes

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