Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00511 Nelumbo nucifera HOM05D000921 ORTHO05D015037 1.1e-75 286.6 147 100.0
Nn1g00513 Nelumbo nucifera HOM05D000921 ORTHO05D004153 3.3e-40 168.7 90 95.6
TAR633G0413 Trochodendron aralioides HOM05D000921 ORTHO05D004153 6.1e-34 147.9 90 81.1
Atru.chr5.1523 Acer truncatum HOM05D000921 ORTHO05D004153 4.4e-32 141.7 90 78.9
GSVIVG01003123001 Vitis vinifera HOM05D000921 ORTHO05D004153 4.4e-32 141.7 90 77.8
Cfa006203 Carpinus fangiana HOM05D000921 ORTHO05D004153 2.8e-31 139.0 90 75.6
ATR0665G073 Amborella trichopoda HOM05D000921 ORTHO05D004153 8.2e-31 137.5 90 76.7
PSO210G1924 Papaver somniferum HOM05D000921 ORTHO05D004153 8.2e-31 137.5 90 76.7
Haze_04641 Corylus avellana HOM05D000921 ORTHO05D004153 1.1e-30 137.1 90 74.4
Cpa.g.sc52.120 Carica papaya HOM05D000921 ORTHO05D004153 1.8e-30 136.3 90 75.6
Dinv22500 Davidia involucrata HOM05D000921 ORTHO05D004153 2.4e-30 136.0 90 75.6
Prupe.8G234500 Prunus persica HOM05D000921 ORTHO05D004153 4.1e-30 135.2 90 75.6
CSS0032745 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004153 7.0e-30 134.4 90 75.6
Nn6g33594 Nelumbo nucifera HOM05D000921 ORTHO05D004153 7.0e-30 134.4 90 77.8
Aqoxy5G00390 Aquilegia oxysepala HOM05D000921 ORTHO05D004153 9.1e-30 134.0 90 74.4
Peaxi162Scf00259g00414 Petunia axillaris HOM05D000921 ORTHO05D004153 1.2e-29 133.7 90 72.2
HPP92_021305 Vanilla planifolia HOM05D000921 ORTHO05D004153 1.2e-29 133.7 90 72.2
Actinidia19962 Actinidia chinensis HOM05D000921 ORTHO05D004153 2.0e-29 132.9 90 73.3
Lj2C1164G7 Lonicera japonica HOM05D000921 ORTHO05D004153 2.0e-29 132.9 90 72.2
COL.COLO4_09186 Corchorus olitorius HOM05D000921 ORTHO05D004153 2.7e-29 132.5 90 75.6
Dinv32883 Davidia involucrata HOM05D000921 ORTHO05D004153 2.7e-29 132.5 90 74.4
Gohir.A08G187300 Gossypium hirsutum HOM05D000921 ORTHO05D004153 3.5e-29 132.1 90 74.4
Gohir.D08G205600 Gossypium hirsutum HOM05D000921 ORTHO05D004153 3.5e-29 132.1 90 74.4
Gorai.004G217600 Gossypium raimondii HOM05D000921 ORTHO05D004153 3.5e-29 132.1 90 74.4
CiPaw.07G086700 Carya illinoinensis HOM05D000921 ORTHO05D004153 4.5e-29 131.7 90 70.0
MD03G1257800 Malus domestica HOM05D000921 ORTHO05D004153 4.5e-29 131.7 90 74.4
Potri.005G215400 Populus trichocarpa HOM05D000921 ORTHO05D004153 4.5e-29 131.7 90 74.4
Rhsim13G0028700 Rhododendron simsii HOM05D000921 ORTHO05D004153 4.5e-29 131.7 90 72.2
CSS0010203 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004153 5.9e-29 131.3 90 71.1
CSS0042369 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004153 5.9e-29 131.3 90 71.1
ClCG09G007420 Citrullus lanatus HOM05D000921 ORTHO05D004153 5.9e-29 131.3 90 72.2
FAN20G3205 Fragaria x ananassa HOM05D000921 ORTHO05D004153 5.9e-29 131.3 90 74.4
Nitab4.5_0003424g0020 Nicotiana tabacum HOM05D000921 ORTHO05D004153 5.9e-29 131.3 90 72.2
Sabra05G0164600 Salix brachista HOM05D000921 ORTHO05D004153 5.9e-29 131.3 90 73.3
Sed0015319 Sechium edule HOM05D000921 ORTHO05D004153 5.9e-29 131.3 90 72.2
Solyc09g065700.3 Solanum lycopersicum HOM05D000921 ORTHO05D004153 5.9e-29 131.3 90 72.2
Sopen09g027450 Solanum pennellii HOM05D000921 ORTHO05D004153 5.9e-29 131.3 90 72.2
Ca_09726_v3 Cicer arietinum L. HOM05D000921 ORTHO05D004153 7.7e-29 131.0 90 72.2
Glyma.02G144200 Glycine max HOM05D000921 ORTHO05D004153 7.7e-29 131.0 90 72.2
Duzib133G0456 Durio zibethinus HOM05D000921 ORTHO05D004153 1.0e-28 130.6 90 73.3
HanXRQChr04g0113931 Helianthus annuus HOM05D000921 ORTHO05D004153 1.0e-28 130.6 90 72.2
Nitab4.5_0000459g0090 Nicotiana tabacum HOM05D000921 ORTHO05D004153 1.0e-28 130.6 90 72.2
vmacro02613 Vaccinium macrocarpon HOM05D000921 ORTHO05D004153 1.0e-28 130.6 90 72.2
DCAR_002700 Daucus carota HOM05D000921 ORTHO05D004153 1.3e-28 130.2 90 72.2
Migut.D00355 Erythranthe guttata HOM05D000921 ORTHO05D004153 1.3e-28 130.2 90 73.3
Lj5g0027434 Lotus japonicus HOM05D000921 ORTHO05D004153 1.3e-28 130.2 90 71.1
Medtr1g071260 Medicago truncatula HOM05D000921 ORTHO05D004153 1.3e-28 130.2 90 72.2
Psat6g058840 Pisum sativum HOM05D000921 ORTHO05D004153 1.3e-28 130.2 90 72.2
Zm00001eb056940 Zea mays HOM05D000921 ORTHO05D004153 1.3e-28 130.2 90 71.1
CsaV3_7G027700 Cucumis sativus L. HOM05D000921 ORTHO05D004153 1.7e-28 129.8 90 71.1
ECA248G3113 Erigeron canadensis HOM05D000921 ORTHO05D004153 1.7e-28 129.8 90 72.2
Gohir.A11G125600 Gossypium hirsutum HOM05D000921 ORTHO05D004153 1.7e-28 129.8 90 73.3
Gohir.D11G131000 Gossypium hirsutum HOM05D000921 ORTHO05D004153 1.7e-28 129.8 90 73.3
Gorai.007G140000 Gossypium raimondii HOM05D000921 ORTHO05D004153 1.7e-28 129.8 90 73.3
HanXRQChr01g0005671 Helianthus annuus HOM05D000921 ORTHO05D004153 1.7e-28 129.8 90 72.2
QL12p042334 Quercus lobata HOM05D000921 ORTHO05D004153 1.7e-28 129.8 90 68.9
Actinidia09105 Actinidia chinensis HOM05D000921 ORTHO05D004153 2.2e-28 129.4 90 72.2
EL10Ac5g10491 Beta vulgaris HOM05D000921 ORTHO05D004153 2.2e-28 129.4 90 73.3
CAN.G1072.6 Capsicum annuum HOM05D000921 ORTHO05D004153 2.2e-28 129.4 90 71.1
RcHm_v2.0_Chr6g0289881 Rosa chinensis HOM05D000921 ORTHO05D004153 2.2e-28 129.4 90 72.2
Ah.11g050210 Amaranthus hybridus HOM05D000921 ORTHO05D004153 2.9e-28 129.0 90 72.2
Eucgr.K03323 Eucalyptus grandis HOM05D000921 ORTHO05D004153 3.8e-28 128.6 90 71.1
FvH4_2g22920 Fragaria vesca HOM05D000921 ORTHO05D004153 3.8e-28 128.6 90 72.2
FAN15G1223 Fragaria x ananassa HOM05D000921 ORTHO05D004153 3.8e-28 128.6 90 72.2
FAN24G0847 Fragaria x ananassa HOM05D000921 ORTHO05D004153 3.8e-28 128.6 90 72.2
MD11G1278500 Malus domestica HOM05D000921 ORTHO05D004153 3.8e-28 128.6 90 74.4
HanXRQChr06g0177821 Helianthus annuus HOM05D000921 ORTHO05D004153 6.5e-28 127.9 90 71.1
Lsat_1_v5_gn_5_185441 Lactuca sativa HOM05D000921 ORTHO05D004153 6.5e-28 127.9 91 72.5
PGR044G0864 Punica granatum HOM05D000921 ORTHO05D004153 6.5e-28 127.9 90 68.9
MELO3C015783.2 Cucumis melo HOM05D000921 ORTHO05D004153 8.5e-28 127.5 90 70.0
Oeu041302.1 Olea europaea HOM05D000921 ORTHO05D004153 8.5e-28 127.5 90 71.1
TPR.G34892 Trifolium pratense HOM05D000921 ORTHO05D004153 1.1e-27 127.1 90 70.0
AUR62011970 Chenopodium quinoa HOM05D000921 ORTHO05D004153 1.5e-27 126.7 90 72.2
AUR62032282 Chenopodium quinoa HOM05D000921 ORTHO05D004153 1.5e-27 126.7 90 72.2
Duzib138G1896 Durio zibethinus HOM05D000921 ORTHO05D004153 1.5e-27 126.7 90 71.1
Glyma.10G030000 Glycine max HOM05D000921 ORTHO05D004153 1.5e-27 126.7 90 71.1
SalBow4G3326 Salvia bowleyana HOM05D000921 ORTHO05D004153 1.5e-27 126.7 90 70.0
BcaB03g15744 Brassica carinata HOM05D000921 ORTHO05D004153 1.9e-27 126.3 90 71.1
A10p01690 Brassica napus HOM05D000921 ORTHO05D004153 1.9e-27 126.3 90 71.1
BraA10t42445Z Brassica rapa HOM05D000921 ORTHO05D004153 1.9e-27 126.3 90 71.1
BcaC07g42269 Brassica carinata HOM05D000921 ORTHO05D004153 2.5e-27 125.9 90 70.0
Carub.0001s0220 Capsella rubella HOM05D000921 ORTHO05D004153 2.5e-27 125.9 90 71.1
Lj1C56G6 Lonicera japonica HOM05D000921 ORTHO05D004153 2.5e-27 125.9 91 72.5
Lalb_Chr06g0162771 Lupinus albus HOM05D000921 ORTHO05D004153 2.5e-27 125.9 90 70.0
Manes.01G203800 Manihot esculenta HOM05D000921 ORTHO05D004153 3.2e-27 125.6 90 70.0
Sc05g0001320 Simmondsia chinensis HOM05D000921 ORTHO05D004153 3.2e-27 125.6 92 68.5
CANSAT25G1208 Cannabis sativa HOM05D000921 ORTHO05D004153 4.2e-27 125.2 90 70.0
A09p68370 Brassica napus HOM05D000921 ORTHO05D004153 5.5e-27 124.8 90 70.0
C08p52940 Brassica napus HOM05D000921 ORTHO05D004153 5.5e-27 124.8 90 70.0
BolC8t52810H Brassica oleracea HOM05D000921 ORTHO05D004153 5.5e-27 124.8 90 70.0
BraA09t42173Z Brassica rapa HOM05D000921 ORTHO05D004153 5.5e-27 124.8 90 70.0
Thhalv10006519m.g Eutrema salsugineum HOM05D000921 ORTHO05D004153 5.5e-27 124.8 90 70.0
TWI18G0154 Tripterygium wilfordii HOM05D000921 ORTHO05D004153 5.5e-27 124.8 90 70.0
AT1G03060 Arabidopsis thaliana HOM05D000921 ORTHO05D004153 7.2e-27 124.4 90 70.0
CARHR002410 Cardamine hirsuta HOM05D000921 ORTHO05D004153 7.2e-27 124.4 90 70.0
Phvul.007G175300 Phaseolus vulgaris HOM05D000921 ORTHO05D004153 7.2e-27 124.4 91 70.3
Sp1g02060 Schrenkiella parvula HOM05D000921 ORTHO05D004153 7.2e-27 124.4 90 70.0
Sp6g02580 Schrenkiella parvula HOM05D000921 ORTHO05D004153 7.2e-27 124.4 90 68.9
THA.LOC104825985 Tarenaya hassleriana HOM05D000921 ORTHO05D004153 7.2e-27 124.4 90 70.0
AL1G12520 Arabidopsis lyrata HOM05D000921 ORTHO05D004153 9.4e-27 124.0 90 70.0
arahy.Tifrunner.gnm1.ann1.0T0464 Arachis hypogaea HOM05D000921 ORTHO05D004153 9.4e-27 124.0 116 58.6
arahy.Tifrunner.gnm1.ann1.BY50EL Arachis hypogaea HOM05D000921 ORTHO05D004153 9.4e-27 124.0 116 58.6
C05p01680 Brassica napus HOM05D000921 ORTHO05D004153 9.4e-27 124.0 90 70.0
BolC5t28947H Brassica oleracea HOM05D000921 ORTHO05D004153 9.4e-27 124.0 90 70.0
Oeu002265.1 Olea europaea HOM05D000921 ORTHO05D004153 9.4e-27 124.0 90 70.0
Potri.002G047700 Populus trichocarpa HOM05D000921 ORTHO05D004153 9.4e-27 124.0 90 71.1
Hund09551 Selenicereus undatus HOM05D000921 ORTHO05D004153 9.4e-27 124.0 90 70.0
Thecc.01G271200 Theobroma cacao HOM05D000921 ORTHO05D004153 1.2e-26 123.6 90 71.1
arahy.Tifrunner.gnm1.ann1.EGZY1N Arachis hypogaea HOM05D000921 ORTHO05D004153 2.1e-26 122.9 90 68.9
arahy.Tifrunner.gnm1.ann1.IAH9UB Arachis hypogaea HOM05D000921 ORTHO05D004153 2.1e-26 122.9 90 68.9
Sabra02G0038900 Salix brachista HOM05D000921 ORTHO05D004153 2.1e-26 122.9 90 71.1
PSO461G0055 Papaver somniferum HOM05D000921 ORTHO05D004153 3.6e-26 122.1 90 70.0
Sc17g0001140 Simmondsia chinensis HOM05D000921 ORTHO05D004153 4.7e-26 121.7 90 68.9
Hma1.2p1_0760F.1_g214090 Hydrangea macrophylla HOM05D000921 ORTHO05D004153 1.4e-25 120.2 90 66.7
Lalb_Chr01g0019981 Lupinus albus HOM05D000921 ORTHO05D004153 1.8e-25 119.8 90 65.6
AL6G50380 Arabidopsis lyrata HOM05D000921 ORTHO05D004153 5.2e-25 118.2 90 67.8
TWI12G1077 Tripterygium wilfordii HOM05D000921 ORTHO05D004153 5.2e-25 118.2 90 67.8
Hund02865 Selenicereus undatus HOM05D000921 ORTHO05D004153 6.8e-25 117.9 123 52.0
BcaB01g02482 Brassica carinata HOM05D000921 ORTHO05D004153 8.8e-25 117.5 90 66.7
Lsat_1_v5_gn_4_20061 Lactuca sativa HOM05D000548 ORTHO05D015037 1.2e-24 117.1 91 68.1
MSTRG.21525 Avicennia marina HOM05D000921 ORTHO05D004153 1.5e-24 116.7 90 63.3
Carub.0006s3446 Capsella rubella HOM05D000921 ORTHO05D004153 2.6e-24 115.9 90 65.6
SGA_v2.0_scaffold1G00535 Striga asiatica HOM05D000921 ORTHO05D004153 3.4e-24 115.5 92 68.5
Aa31LG1G9470 Aethionema arabicum HOM05D000921 ORTHO05D004153 4.4e-24 115.2 90 68.9
BcaC01g06740 Brassica carinata HOM05D000921 ORTHO05D004153 4.4e-24 115.2 90 65.6
A03p30920 Brassica napus HOM05D000921 ORTHO05D004153 4.4e-24 115.2 90 65.6
C03p37700 Brassica napus HOM05D000921 ORTHO05D004153 4.4e-24 115.2 90 65.6
BolC3t16059H Brassica oleracea HOM05D000921 ORTHO05D004153 4.4e-24 115.2 90 65.6
BraA03t12271Z Brassica rapa HOM05D000921 ORTHO05D004153 4.4e-24 115.2 90 65.6
Cc01_g18990 Coffea canephora HOM05D000921 ORTHO05D004153 5.7e-24 114.8 90 64.4
ECA236G3737 Erigeron canadensis HOM05D000921 ORTHO05D004153 5.7e-24 114.8 90 61.1
CAN.G1355.6 Capsicum annuum HOM05D000921 ORTHO05D004153 9.8e-24 114.0 90 64.4
Lsat_1_v5_gn_8_93941 Lactuca sativa HOM05D000921 ORTHO05D004153 2.8e-23 112.5 93 64.5
Gorai.004G056400 Gossypium raimondii HOM05D000921 ORTHO05D004153 6.3e-23 111.3 90 61.1
Gohir.D08G055600 Gossypium hirsutum HOM05D000921 ORTHO05D004153 8.3e-23 110.9 90 61.1
AT4G02660 Arabidopsis thaliana HOM05D000921 ORTHO05D004153 1.4e-22 110.2 90 65.6
CARHR250960 Cardamine hirsuta HOM05D000921 ORTHO05D004153 1.4e-22 110.2 90 64.4
SEGI_18450 Sequoiadendron giganteum HOM05D000921 ORTHO05D004153 3.1e-22 109.0 90 58.9
unitig_61.g26265 Utricularia gibba HOM05D000921 ORTHO05D004153 4.5e-21 105.1 90 61.1
SHI10018 Sapria himalayana HOM05D000921 ORTHO05D004153 2.8e-18 95.9 91 59.3
CDE04G0357 Ceratophyllum demersum HOM05D000921 ORTHO05D004153 1.0e-17 94.0 90 51.1
CDE10G0697 Ceratophyllum demersum HOM05D000921 ORTHO05D004153 8.3e-15 84.3 90 50.0
AagrBONN_evm.TU.Sc2ySwM_117.1900 Anthoceros agrestis HOM05D000921 ORTHO05D004153 2.0e-13 79.7 108 45.4
Mapoly0082s0083 Marchantia polymorpha HOM05D000921 ORTHO05D004153 3.5e-13 79.0 92 48.9
Pp3c6_26100 Physcomitrium patens HOM05D000921 ORTHO05D004153 1.7e-12 76.6 108 39.8
SMO236G0048 Selaginella moellendorffii HOM05D000921 ORTHO05D004153 1.7e-12 76.6 92 47.8
Pp3c5_2890 Physcomitrium patens HOM05D000921 ORTHO05D004153 2.3e-12 76.3 108 38.9
Pp3c5_2897 Physcomitrium patens HOM05D000921 ORTHO05D004153 2.3e-12 76.3 108 38.9
Pp3c16_11700 Physcomitrium patens HOM05D000921 ORTHO05D004153 4.0e-09 65.5 104 40.4
Pp3c16_11705 Physcomitrium patens HOM05D000921 ORTHO05D004153 4.0e-09 65.5 104 40.4
AUR62032279 Chenopodium quinoa HOM05D000921 ORTHO05D004153 6.8e-09 64.7 76 43.4
Hund09555 Selenicereus undatus HOM05D000921 ORTHO05D004153 8.9e-09 64.3 76 47.4
AUR62011967 Chenopodium quinoa HOM05D000921 ORTHO05D004153 5.8e-08 61.6 86 40.7
Pp3c6_5700 Physcomitrium patens HOM05D000921 ORTHO05D004153 7.5e-08 61.2 91 36.3
Pp3c6_5706 Physcomitrium patens HOM05D000921 ORTHO05D004153 7.5e-08 61.2 91 36.3


User provided reference genes

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