Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00292 Nelumbo nucifera HOM05D002306 ORTHO05D005773 3.7e-238 827.8 407 100.0
Nn3g18949 Nelumbo nucifera HOM05D002306 ORTHO05D005773 1.0e-195 686.8 407 83.3
Dinv29264 Davidia involucrata HOM05D002306 ORTHO05D005773 1.4e-165 586.6 408 71.1
Cfa016243 Carpinus fangiana HOM05D002306 ORTHO05D005773 5.6e-162 574.7 410 70.7
CiPaw.06G045200 Carya illinoinensis HOM05D002306 ORTHO05D005773 5.6e-162 574.7 412 69.2
Aqoxy6G02068 Aquilegia oxysepala HOM05D002306 ORTHO05D005773 9.5e-162 573.9 410 70.2
MBI06_g46366_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 1.1e-160 570.5 411 69.8
PSO135G0144 Papaver somniferum HOM05D002306 ORTHO05D005773 1.2e-159 567.0 411 68.9
PSO384G1073 Papaver somniferum HOM05D002306 ORTHO05D005773 4.4e-159 565.1 409 68.9
PGR142G2770 Punica granatum HOM05D002306 ORTHO05D005773 6.4e-158 561.2 407 67.3
GSVIVG01038567001 Vitis vinifera HOM05D002306 ORTHO05D005773 6.4e-158 561.2 408 69.1
vmacro10129 Vaccinium macrocarpon HOM05D002306 ORTHO05D005773 2.4e-157 559.3 406 69.0
Prupe.2G313000 Prunus persica HOM05D002306 ORTHO05D005773 9.2e-157 557.4 409 68.2
QL09p008623 Quercus lobata HOM05D002306 ORTHO05D005773 3.5e-156 555.4 421 67.5
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 7.8e-156 554.3 391 71.4
MD07G1293200 Malus domestica HOM05D002306 ORTHO05D005773 1.3e-155 553.5 409 67.2
Manes.01G185000 Manihot esculenta HOM05D002306 ORTHO05D005773 1.3e-155 553.5 412 69.9
TWI39G0548 Tripterygium wilfordii HOM05D002306 ORTHO05D005773 1.3e-155 553.5 411 66.9
CANSAT21G2187 Cannabis sativa HOM05D002306 ORTHO05D005773 1.7e-155 553.1 405 67.9
Potri.012G017100 Populus trichocarpa HOM05D002306 ORTHO05D005773 3.0e-155 552.4 421 66.0
Rhsim09G0206400 Rhododendron simsii HOM05D002306 ORTHO05D005773 3.0e-155 552.4 407 68.3
Potri.015G011300 Populus trichocarpa HOM05D002306 ORTHO05D005773 5.1e-155 551.6 420 66.0
Eucgr.K00394 Eucalyptus grandis HOM05D002306 ORTHO05D005773 6.6e-155 551.2 404 68.1
Duzib205G1406 Durio zibethinus HOM05D002306 ORTHO05D005773 1.1e-154 550.4 408 67.6
Actinidia06142 Actinidia chinensis HOM05D002306 ORTHO05D005773 2.1e-153 546.2 408 67.2
THA.LOC104799971 Tarenaya hassleriana HOM05D002306 ORTHO05D005773 6.2e-153 544.7 409 65.5
Duzib084G0543 Durio zibethinus HOM05D002306 ORTHO05D005773 1.1e-152 543.9 408 67.4
VMungo0647G1725 Vigna mungo HOM05D002306 ORTHO05D005773 1.1e-152 543.9 407 65.1
FAN06G4818 Fragaria x ananassa HOM05D002306 ORTHO05D005773 3.1e-152 542.3 407 66.1
Lalb_Chr01g0013731 Lupinus albus HOM05D002306 ORTHO05D005773 5.2e-152 541.6 419 63.5
MD01G1222600 Malus domestica HOM05D002306 ORTHO05D005773 5.2e-152 541.6 410 66.3
Thecc.03G200900 Theobroma cacao HOM05D002306 ORTHO05D005773 5.2e-152 541.6 412 66.0
RcHm_v2.0_Chr1g0381481 Rosa chinensis HOM05D002306 ORTHO05D005773 9.0e-152 540.8 411 66.4
CSS0036676 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D005773 1.2e-151 540.4 409 66.3
FAN01G0065 Fragaria x ananassa HOM05D002306 ORTHO05D005773 4.4e-151 538.5 407 65.8
FvH4_7g31980 Fragaria vesca HOM05D002306 ORTHO05D005773 1.3e-150 537.0 407 65.6
FAN03G1878 Fragaria x ananassa HOM05D002306 ORTHO05D005773 1.3e-150 537.0 408 65.7
Glyma.14G162400 Glycine max HOM05D002306 ORTHO05D005773 2.9e-150 535.8 409 64.3
Glyma.19G065800 Glycine max HOM05D002306 ORTHO05D005773 1.4e-149 533.5 409 64.5
ClCG01G000390 Citrullus lanatus HOM05D002306 ORTHO05D005773 1.9e-149 533.1 409 65.0
Phvul.001G075000 Phaseolus vulgaris HOM05D002306 ORTHO05D005773 1.2e-148 530.4 409 63.8
FAN10G2791 Fragaria x ananassa HOM05D002306 ORTHO05D005773 2.1e-148 529.6 434 62.7
Aa31LG3G9420 Aethionema arabicum HOM05D002306 ORTHO05D005773 2.7e-148 529.3 448 60.7
Gorai.008G267900 Gossypium raimondii HOM05D002306 ORTHO05D005773 2.7e-148 529.3 405 65.4
Cc02_g01380 Coffea canephora HOM05D002306 ORTHO05D005773 4.6e-148 528.5 409 63.3
Gohir.D12G249800 Gossypium hirsutum HOM05D002306 ORTHO05D005773 6.0e-148 528.1 405 65.4
Nitab4.5_0000548g0060 Nicotiana tabacum HOM05D002306 ORTHO05D005773 1.3e-147 526.9 408 64.0
CARHR266070 Cardamine hirsuta HOM05D002306 ORTHO05D005773 1.7e-147 526.6 412 64.8
Nitab4.5_0005491g0070 Nicotiana tabacum HOM05D002306 ORTHO05D005773 1.7e-147 526.6 408 64.2
CiPaw.05G198100 Carya illinoinensis HOM05D002306 ORTHO05D005773 2.3e-147 526.2 360 72.2
Oeu037052.1 Olea europaea HOM05D002306 ORTHO05D005773 2.3e-147 526.2 409 65.3
Sabra15G0009300 Salix brachista HOM05D002306 ORTHO05D005773 2.3e-147 526.2 484 57.2
FAN10G0091 Fragaria x ananassa HOM05D002306 ORTHO05D005773 3.0e-147 525.8 434 62.4
Gohir.A12G249000 Gossypium hirsutum HOM05D002306 ORTHO05D005773 3.9e-147 525.4 405 65.2
MELO3C005890.2 Cucumis melo HOM05D002306 ORTHO05D005773 1.1e-146 523.9 409 63.8
Carub.0008s1325 Capsella rubella HOM05D002306 ORTHO05D005773 3.3e-146 522.3 409 63.8
CsaV3_5G000460 Cucumis sativus L. HOM05D002306 ORTHO05D005773 5.6e-146 521.5 409 63.3
PGSC0003DMG401018530 Solanum tuberosum HOM05D002306 ORTHO05D005773 5.6e-146 521.5 408 64.2
Medtr1g007860 Medicago truncatula HOM05D002306 ORTHO05D005773 1.3e-145 520.4 415 61.9
AT5G53050 Arabidopsis thaliana HOM05D002306 ORTHO05D005773 1.6e-145 520.0 409 64.3
Manes.05G190400 Manihot esculenta HOM05D002306 ORTHO05D005773 2.8e-145 519.2 341 75.1
Migut.F00200 Erythranthe guttata HOM05D002306 ORTHO05D005773 4.8e-145 518.5 410 63.7
Sed0011455 Sechium edule HOM05D002306 ORTHO05D005773 4.8e-145 518.5 407 62.9
CAN.G481.26 Capsicum annuum HOM05D002306 ORTHO05D005773 6.2e-145 518.1 408 62.0
Ciclev10020415m.g Citrus clementina HOM05D002306 ORTHO05D005773 1.4e-144 516.9 409 63.8
Peaxi162Scf00740g00143 Petunia axillaris HOM05D002306 ORTHO05D005773 1.8e-144 516.5 408 63.0
Sopen03g022820 Solanum pennellii HOM05D002306 ORTHO05D005773 1.8e-144 516.5 408 62.7
Actinidia34230 Actinidia chinensis HOM05D002306 ORTHO05D005773 2.4e-144 516.2 348 72.4
Solyc03g083010.3 Solanum lycopersicum HOM05D002306 ORTHO05D005773 2.4e-144 516.2 408 62.3
Thhalv10013609m.g Eutrema salsugineum HOM05D002306 ORTHO05D005773 4.0e-144 515.4 409 62.8
DCAR_020335 Daucus carota HOM05D002306 ORTHO05D005773 9.0e-144 514.2 408 63.0
Hma1.2p1_1587F.1_g292250 Hydrangea macrophylla HOM05D002306 ORTHO05D005773 2.0e-143 513.1 342 71.6
Sp7g25780 Schrenkiella parvula HOM05D002306 ORTHO05D005773 4.5e-143 511.9 412 62.4
Ca_12784_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 2.9e-142 509.2 388 64.4
Ca_12788_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 2.9e-142 509.2 388 64.4
CDE04G0267 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 3.8e-142 508.8 401 63.3
EL10Ac3g05271 Beta vulgaris HOM05D002306 ORTHO05D005773 4.9e-142 508.4 408 62.7
Hund11654 Selenicereus undatus HOM05D002306 ORTHO05D005773 4.9e-142 508.4 408 62.3
AL8G27680 Arabidopsis lyrata HOM05D002306 ORTHO05D005773 6.4e-142 508.1 452 58.4
Actinidia08661 Actinidia chinensis HOM05D002306 ORTHO05D005773 2.4e-141 506.1 394 65.2
Cpa.g.sc3.100 Carica papaya HOM05D002306 ORTHO05D005773 4.2e-141 505.4 357 68.6
A10p10540 Brassica napus HOM05D002306 ORTHO05D005773 1.2e-140 503.8 409 61.6
Lj1g0011159 Lotus japonicus HOM05D002306 ORTHO05D005773 1.2e-140 503.8 421 60.8
BcaC04g20512 Brassica carinata HOM05D002306 ORTHO05D005773 1.6e-140 503.4 409 61.1
BolC9t57152H Brassica oleracea HOM05D002306 ORTHO05D005773 1.6e-140 503.4 409 61.1
BraA03t10835Z Brassica rapa HOM05D002306 ORTHO05D005773 1.6e-140 503.4 411 61.1
SalBow4G3229 Salvia bowleyana HOM05D002306 ORTHO05D005773 1.6e-140 503.4 422 60.7
BraA10t43138Z Brassica rapa HOM05D002306 ORTHO05D005773 2.1e-140 503.1 409 61.4
Os05g0542200 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D005773 1.0e-139 500.7 405 62.0
A03p15450 Brassica napus HOM05D002306 ORTHO05D005773 2.3e-139 499.6 411 60.6
arahy.Tifrunner.gnm1.ann1.4T5RFS Arachis hypogaea HOM05D002306 ORTHO05D005773 3.9e-139 498.8 418 59.1
Eucgr.A01449 Eucalyptus grandis HOM05D002306 ORTHO05D005773 1.5e-138 496.9 406 60.8
A03p15420 Brassica napus HOM05D002306 ORTHO05D005773 1.9e-138 496.5 410 60.0
arahy.Tifrunner.gnm1.ann1.FPLI9C Arachis hypogaea HOM05D002306 ORTHO05D005773 2.5e-138 496.1 418 58.9
BraA03t10837Z Brassica rapa HOM05D002306 ORTHO05D005773 2.5e-138 496.1 417 60.0
HPP92_010499 Vanilla planifolia HOM05D002306 ORTHO05D005773 2.5e-138 496.1 409 60.4
BcaB08g35665 Brassica carinata HOM05D002306 ORTHO05D005773 3.3e-138 495.7 409 60.4
Sp6g15210 Schrenkiella parvula HOM05D002306 ORTHO05D005773 3.3e-138 495.7 409 61.6
C03p18010 Brassica napus HOM05D002306 ORTHO05D005773 4.3e-138 495.4 410 61.0
BolC3t14206H Brassica oleracea HOM05D002306 ORTHO05D005773 4.3e-138 495.4 410 61.0
BcaB01g04217 Brassica carinata HOM05D002306 ORTHO05D005773 5.6e-138 495.0 410 60.2
BcaC01g06217 Brassica carinata HOM05D002306 ORTHO05D005773 2.8e-137 492.7 410 60.7
Lsat_1_v5_gn_9_49801 Lactuca sativa HOM05D002306 ORTHO05D005773 2.8e-137 492.7 408 61.0
Atru.chr12.2238 Acer truncatum HOM05D002306 ORTHO05D005773 1.4e-136 490.3 323 72.4
Zm00001eb294430 Zea mays HOM05D002306 ORTHO05D005773 4.0e-136 488.8 406 60.3
ECA232G4612 Erigeron canadensis HOM05D002306 ORTHO05D005773 5.3e-136 488.4 409 59.9
C09p42760 Brassica napus HOM05D002306 ORTHO05D005773 1.2e-135 487.3 437 57.0
Ah.13g070360 Amaranthus hybridus HOM05D002306 ORTHO05D005773 5.8e-135 485.0 352 67.6
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 1.7e-134 483.4 436 58.7
Psat6g034960 Pisum sativum HOM05D002306 ORTHO05D005773 3.8e-134 482.3 346 67.3
PGR042G0827 Punica granatum HOM05D002306 ORTHO05D005773 6.4e-134 481.5 339 68.4
Sc13g0009860 Simmondsia chinensis HOM05D002306 ORTHO05D005773 6.4e-134 481.5 349 66.8
Sabra12G0015300 Salix brachista HOM05D002306 ORTHO05D005773 1.4e-133 480.3 404 62.9
ATR0602G226 Amborella trichopoda HOM05D002306 ORTHO05D005773 1.9e-133 479.9 400 61.0
Hund21009 Selenicereus undatus HOM05D002306 ORTHO05D005773 2.5e-133 479.6 340 69.1
Oeu060994.1 Olea europaea HOM05D002306 ORTHO05D005773 7.1e-133 478.0 413 60.8
HanXRQChr15g0485691 Helianthus annuus HOM05D002306 ORTHO05D005773 2.1e-132 476.5 412 59.0
AUR62006082 Chenopodium quinoa HOM05D002306 ORTHO05D005773 6.0e-132 474.9 337 67.7
Actinidia08663 Actinidia chinensis HOM05D002306 ORTHO05D005773 7.9e-132 474.6 338 70.7
AUR62019412 Chenopodium quinoa HOM05D002306 ORTHO05D005773 7.9e-132 474.6 337 67.7
HanXRQChr04g0100471 Helianthus annuus HOM05D002306 ORTHO05D005773 2.3e-131 473.0 414 57.7
Lsat_1_v5_gn_2_136261 Lactuca sativa HOM05D002306 ORTHO05D005773 3.8e-126 455.7 403 58.1
Sed0009393 Sechium edule HOM05D002306 ORTHO05D005773 1.0e-123 447.6 314 69.1
Zm00001eb342430 Zea mays HOM05D002306 ORTHO05D005773 3.3e-122 442.6 384 58.9
Lj3C903G6 Lonicera japonica HOM05D002306 ORTHO05D005773 8.2e-113 411.4 291 69.8
unitig_748.g7291 Utricularia gibba HOM05D002306 ORTHO05D005773 6.5e-110 401.7 337 59.3
Mapoly0155s0003 Marchantia polymorpha HOM05D002306 ORTHO05D005773 2.2e-102 376.7 445 44.0
Pp3c4_28770 Physcomitrium patens HOM05D002306 ORTHO05D005773 2.5e-93 346.7 350 48.6
AagrBONN_evm.TU.Sc2ySwM_228.3658 Anthoceros agrestis HOM05D002306 ORTHO05D005773 3.0e-91 339.7 351 46.7
CBR_g39074 Chara braunii HOM05D002306 ORTHO05D005773 1.7e-89 334.0 348 48.0
CBR_g52250 Chara braunii HOM05D002306 ORTHO05D005773 4.5e-87 325.9 348 48.6
SHI02360 Sapria himalayana HOM05D002306 ORTHO05D005773 7.2e-85 318.5 286 56.6
COL.COLO4_16788 Corchorus olitorius HOM05D002306 ORTHO05D005773 2.7e-84 316.6 195 75.4
QL05p052295 Quercus lobata HOM05D002306 ORTHO05D005773 8.3e-81 305.1 222 66.2
MBI06_g36471_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 1.6e-79 300.8 247 64.0
SMO147G0069 Selaginella moellendorffii HOM05D002306 ORTHO05D005773 7.2e-77 292.0 274 51.1
unitig_0.g2458 Utricularia gibba HOM05D000451 ORTHO05D000351 7.3e-69 265.4 272 50.7
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 1.4e-67 261.2 348 42.8
CDE03G0512 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 3.2e-48 196.8 175 56.0
Cre11.g481250 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 4.6e-47 193.0 294 39.5
Ciclev10023844m.g Citrus clementina HOM05D002306 ORTHO05D005773 7.6e-42 175.6 188 51.1
Lsat_1_v5_gn_7_80100 Lactuca sativa HOM05D002306 ORTHO05D005773 1.4e-40 171.4 138 57.2
Cre02.g077451 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 2.2e-33 147.5 320 30.6
PRCOL_00002303 Prasinoderma coloniale HOM05D002306 ORTHO05D005773 1.7e-30 137.9 332 30.4
Lj3C903G5 Lonicera japonica HOM05D002306 ORTHO05D005773 3.9e-30 136.7 116 60.3
Actinidia03176 Actinidia chinensis HOM05D002306 ORTHO05D005773 1.2e-26 125.2 78 73.1
COL.COLO4_16789 Corchorus olitorius HOM05D002476 ORTHO05D002652 4.5e-26 123.2 111 57.7
TPR.G40491 Trifolium pratense HOM05D002306 ORTHO05D005773 2.2e-25 120.9 61 90.2
CDE03G0170 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 2.1e-23 114.4 91 65.9
SEGI_37240 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 6.0e-23 112.8 59 86.4
SEGI_09966 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 4.8e-20 103.2 129 46.5
Lsat_1_v5_gn_5_184380 Lactuca sativa HOM05D000942 ORTHO05D014303 5.8e-18 96.3 61 70.5
TAR629G2756 Trochodendron aralioides HOM05D002306 ORTHO05D005773 5.8e-18 96.3 68 69.1
SEGI_13792 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 1.3e-17 95.1 77 58.4
Oeu053931.1 Olea europaea HOM05D002306 ORTHO05D005773 3.5e-15 87.0 68 61.8
Medtr5g071310 Medicago truncatula HOM05D000009 ORTHO05D000008 4.6e-15 86.7 127 39.4
Lsat_1_v5_gn_7_88240 Lactuca sativa HOM05D000942 ORTHO05D014303 9.0e-11 72.4 120 40.0
SEGI_03713 Sequoiadendron giganteum HOM05D002306 ORTHO05D036569 1.2e-10 72.0 50 64.0
Cpa.g.sc6.184 Carica papaya HOM05D000363 ORTHO05D000236 1.1e-08 65.5 339 23.3
CDE08G0389 Ceratophyllum demersum HOM05D000363 ORTHO05D000236 3.5e-07 60.5 76 39.5
Medtr5g071570 Medicago truncatula HOM05D000009 ORTHO05D000008 3.5e-07 60.5 60 56.7
Medtr5g070490 Medicago truncatula HOM05D000009 ORTHO05D000008 4.6e-07 60.1 90 38.9
MD15G1252000 Malus domestica HOM05D000363 ORTHO05D000236 6.1e-07 59.7 78 38.5
AagrBONN_evm.TU.Sc2ySwM_362.2316 Anthoceros agrestis HOM05D000363 ORTHO05D000236 1.3e-06 58.5 104 37.5
FAN23G1427 Fragaria x ananassa HOM05D000363 ORTHO05D000236 1.3e-06 58.5 77 40.3
MD02G1138500 Malus domestica HOM05D000363 ORTHO05D000236 1.3e-06 58.5 78 38.5
Medtr5g070470 Medicago truncatula HOM05D000009 ORTHO05D000008 1.3e-06 58.5 129 37.2
FvH4_1g12460 Fragaria vesca HOM05D000363 ORTHO05D000236 1.8e-06 58.2 77 39.0
FAN19G0327 Fragaria x ananassa HOM05D000363 ORTHO05D000236 1.8e-06 58.2 77 39.0
Prupe.3G156800 Prunus persica HOM05D000363 ORTHO05D000236 2.3e-06 57.8 91 34.1
MELO3C017947.2 Cucumis melo HOM05D000363 ORTHO05D000236 3.0e-06 57.4 78 38.5
Gorai.007G199500 Gossypium raimondii HOM05D000363 ORTHO05D000236 3.0e-06 57.4 78 38.5
Gohir.A11G181100 Gossypium hirsutum HOM05D000363 ORTHO05D000236 3.9e-06 57.0 78 38.5
PSO170G6498 Papaver somniferum HOM05D000363 ORTHO05D000236 3.9e-06 57.0 337 24.6
Prupe.7G162400 Prunus persica HOM05D000363 ORTHO05D000236 3.9e-06 57.0 78 37.2
AagrBONN_evm.TU.Sc2ySwM_362.2317 Anthoceros agrestis HOM05D000363 ORTHO05D000236 5.1e-06 56.6 104 36.5
QL11p045365 Quercus lobata HOM05D000363 ORTHO05D000236 6.7e-06 56.2 77 41.6
GSVIVG01018184001 Vitis vinifera HOM05D000363 ORTHO05D000236 6.7e-06 56.2 91 37.4
RcHm_v2.0_Chr2g0100321 Rosa chinensis HOM05D000363 ORTHO05D000236 8.7e-06 55.8 77 37.7


User provided reference genes

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