Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00099 Nelumbo nucifera HOM05D000501 ORTHO05D049315 3.2e-50 201.4 100 100.0
Nn1g00211 Nelumbo nucifera HOM05D000501 ORTHO05D049315 3.2e-50 201.4 100 100.0
Nn3g21429 Nelumbo nucifera HOM05D000501 ORTHO05D000376 2.4e-34 148.7 91 80.2
Aqoxy5G00711 Aquilegia oxysepala HOM05D000501 ORTHO05D000376 2.2e-19 99.0 87 58.6
QL03p021384 Quercus lobata HOM05D000501 ORTHO05D000376 2.9e-19 98.6 80 60.0
Lj1g0003996 Lotus japonicus HOM05D000501 ORTHO05D000376 4.9e-19 97.8 75 62.7
Cfa006622 Carpinus fangiana HOM05D000501 ORTHO05D000376 1.1e-18 96.7 71 64.8
Duzib177G0785 Durio zibethinus HOM05D000501 ORTHO05D000376 1.9e-18 95.9 72 63.9
Haze_04148 Corylus avellana HOM05D000501 ORTHO05D000376 5.4e-18 94.4 71 63.4
Duzib106G0595 Durio zibethinus HOM05D000501 ORTHO05D000376 5.4e-18 94.4 72 62.5
Ciclev10000227m.g Citrus clementina HOM05D000501 ORTHO05D000376 1.2e-17 93.2 82 58.5
VMungo0540G2074 Vigna mungo HOM05D000501 ORTHO05D000376 1.6e-17 92.8 72 63.9
Glyma.03G236300 Glycine max HOM05D000501 ORTHO05D000376 2.7e-17 92.0 76 59.2
Sabra05G0031600 Salix brachista HOM05D000501 ORTHO05D000376 2.7e-17 92.0 72 63.9
Thecc.05G312200 Theobroma cacao HOM05D000501 ORTHO05D000376 6.0e-17 90.9 73 64.4
Phvul.006G090200 Phaseolus vulgaris HOM05D000501 ORTHO05D000376 7.9e-17 90.5 72 62.5
CiPaw.07G020800 Carya illinoinensis HOM05D000501 ORTHO05D000376 1.0e-16 90.1 83 55.4
Potri.005G026200 Populus trichocarpa HOM05D000501 ORTHO05D000376 1.0e-16 90.1 72 63.9
Cpa.g.sc48.86 Carica papaya HOM05D000501 ORTHO05D000376 3.9e-16 88.2 69 63.8
Gohir.A11G267300 Gossypium hirsutum HOM05D000501 ORTHO05D000376 5.1e-16 87.8 74 56.8
Gohir.D11G277300 Gossypium hirsutum HOM05D000501 ORTHO05D000376 5.1e-16 87.8 74 56.8
Gorai.007G299500 Gossypium raimondii HOM05D000501 ORTHO05D000376 5.1e-16 87.8 74 56.8
Lalb_Chr15g0077321 Lupinus albus HOM05D000501 ORTHO05D000376 6.7e-16 87.4 69 60.9
Atru.chr2.23 Acer truncatum HOM05D000501 ORTHO05D000376 8.7e-16 87.0 76 63.2
Glyma.19G233900 Glycine max HOM05D000501 ORTHO05D000376 1.9e-15 85.9 77 59.7
arahy.Tifrunner.gnm1.ann1.F7UUKP Arachis hypogaea HOM05D000501 ORTHO05D000376 4.3e-15 84.7 69 65.2
ClCG03G017090 Citrullus lanatus HOM05D000501 ORTHO05D000376 1.3e-14 83.2 77 57.1
arahy.Tifrunner.gnm1.ann1.RRC04T Arachis hypogaea HOM05D000501 ORTHO05D000376 1.6e-14 82.8 69 63.8
Prupe.6G321500 Prunus persica HOM05D000501 ORTHO05D000376 1.6e-14 82.8 78 59.0
MELO3C015312.2 Cucumis melo HOM05D000501 ORTHO05D000376 2.8e-14 82.0 77 55.8
CDE05G0175 Ceratophyllum demersum HOM05D000501 ORTHO05D000376 3.7e-14 81.6 101 43.6
CDE11G1198 Ceratophyllum demersum HOM05D000501 ORTHO05D000376 8.1e-14 80.5 101 43.6
COL.COLO4_10511 Corchorus olitorius HOM05D000501 ORTHO05D000376 8.1e-14 80.5 72 55.6
Phvul.007G196800 Phaseolus vulgaris HOM05D000501 ORTHO05D000376 8.1e-14 80.5 79 57.0
Manes.08G118500 Manihot esculenta HOM05D000501 ORTHO05D000376 1.1e-13 80.1 72 55.6
CsaV3_1G038860 Cucumis sativus L. HOM05D000501 ORTHO05D000376 2.4e-13 79.0 77 54.5
Glyma.10G152200 Glycine max HOM05D000501 ORTHO05D000376 4.0e-13 78.2 78 53.8
Nitab4.5_0007958g0020 Nicotiana tabacum HOM05D000501 ORTHO05D000376 9.0e-13 77.0 74 56.8
Glyma.20G236200 Glycine max HOM05D000501 ORTHO05D000376 1.2e-12 76.6 78 52.6
VMungo0720G0722 Vigna mungo HOM05D000501 ORTHO05D000376 2.0e-12 75.9 89 49.4
Nn2g11060 Nelumbo nucifera HOM05D000501 ORTHO05D000376 4.5e-12 74.7 91 52.7
Psat6g151240 Pisum sativum HOM05D000501 ORTHO05D000376 5.8e-12 74.3 83 48.2
Nitab4.5_0006988g0020 Nicotiana tabacum HOM05D000501 ORTHO05D000376 1.0e-11 73.6 66 57.6
PGSC0003DMG400024754 Solanum tuberosum HOM05D000501 ORTHO05D000376 1.0e-11 73.6 74 58.1
CAN.G1459.1 Capsicum annuum HOM05D000501 ORTHO05D000376 1.3e-11 73.2 75 54.7
Peaxi162Scf00037g01033 Petunia axillaris HOM05D000501 ORTHO05D000376 3.8e-11 71.6 67 53.7
MSTRG.20423 Avicennia marina HOM05D000501 ORTHO05D000376 6.5e-11 70.9 79 49.4
Cc02_g33130 Coffea canephora HOM05D000501 ORTHO05D000376 6.5e-11 70.9 92 46.7
Solyc01g099620.3 Solanum lycopersicum HOM05D000501 ORTHO05D000376 8.4e-11 70.5 67 55.2
Sopen00g012670 Solanum pennellii HOM05D000501 ORTHO05D000376 8.4e-11 70.5 75 49.3
Sopen01g043140 Solanum pennellii HOM05D000501 ORTHO05D000376 8.4e-11 70.5 75 49.3
Ca_10126_v3 Cicer arietinum L. HOM05D000501 ORTHO05D000376 1.1e-10 70.1 71 53.5
CANSAT54G0845 Cannabis sativa HOM05D000501 ORTHO05D000376 1.4e-10 69.7 79 43.0
Sed0012064 Sechium edule HOM05D000501 ORTHO05D000376 2.5e-10 68.9 90 46.7
arahy.Tifrunner.gnm1.ann1.UCH6AW Arachis hypogaea HOM05D000501 ORTHO05D000376 3.2e-10 68.6 79 50.6
Medtr1g083290 Medicago truncatula HOM05D000501 ORTHO05D000376 4.2e-10 68.2 68 51.5
TPR.G6086 Trifolium pratense HOM05D000501 ORTHO05D000376 4.2e-10 68.2 80 48.8
DCAR_029394 Daucus carota HOM05D000501 ORTHO05D000376 5.5e-10 67.8 77 50.6
Eucgr.H04514 Eucalyptus grandis HOM05D000501 ORTHO05D000376 5.5e-10 67.8 69 56.5
Medtr7g113130 Medicago truncatula HOM05D000501 ORTHO05D000376 7.1e-10 67.4 75 53.3
Hma1.2p1_1212F.1_g267340 Hydrangea macrophylla HOM05D000501 ORTHO05D000376 9.3e-10 67.0 80 48.8
Lj5g0018059 Lotus japonicus HOM05D000501 ORTHO05D000376 9.3e-10 67.0 57 61.4
Eucgr.L01771 Eucalyptus grandis HOM05D000501 ORTHO05D000376 2.1e-09 65.9 69 55.1
QL03p021376 Quercus lobata HOM05D000501 ORTHO05D000376 7.9e-09 63.9 83 43.4
EL10Ac4g09926 Beta vulgaris HOM05D000501 ORTHO05D000376 1.0e-08 63.5 78 46.2
Ah.04g161060 Amaranthus hybridus HOM05D000501 ORTHO05D000376 1.8e-08 62.8 68 50.0
AUR62000775 Chenopodium quinoa HOM05D000501 ORTHO05D000376 3.9e-08 61.6 78 44.9
Sc09g0002990 Simmondsia chinensis HOM05D000501 ORTHO05D000376 3.9e-08 61.6 73 49.3
TPR.G33227 Trifolium pratense HOM05D000501 ORTHO05D000376 3.9e-08 61.6 75 49.3
Potri.012G111600 Populus trichocarpa HOM05D000501 ORTHO05D000376 6.7e-08 60.8 98 42.9
Rhsim08G0200300 Rhododendron simsii HOM05D000501 ORTHO05D000376 6.7e-08 60.8 97 43.3
Sabra12G0081300 Salix brachista HOM05D000501 ORTHO05D000376 1.9e-07 59.3 99 41.4
TAR622G0470 Trochodendron aralioides HOM05D000501 ORTHO05D000376 1.9e-07 59.3 115 39.1
Ah.06g189730 Amaranthus hybridus HOM05D000501 ORTHO05D000376 2.5e-07 58.9 72 47.2
Psat3g011120 Pisum sativum HOM05D000501 ORTHO05D000376 2.5e-07 58.9 85 42.4
ECA247G1659 Erigeron canadensis HOM05D000501 ORTHO05D000376 3.3e-07 58.5 89 46.1
vmacro19095 Vaccinium macrocarpon HOM05D000501 ORTHO05D000376 4.3e-07 58.2 97 44.3
Dinv13694 Davidia involucrata HOM05D000501 ORTHO05D000376 7.4e-07 57.4 90 43.3
Duzib205G1745 Durio zibethinus HOM05D000501 ORTHO05D000376 7.4e-07 57.4 83 49.4
SalBow7G2515 Salvia bowleyana HOM05D000501 ORTHO05D000376 1.3e-06 56.6 88 43.2
Oeu012861.1 Olea europaea HOM05D000501 ORTHO05D000376 1.6e-06 56.2 84 45.2
Eucgr.J01662 Eucalyptus grandis HOM05D000501 ORTHO05D000376 2.8e-06 55.5 112 39.3
ATR0582G212 Amborella trichopoda HOM05D000501 ORTHO05D000376 4.8e-06 54.7 103 39.8
PSO017G7242 Papaver somniferum HOM05D000501 ORTHO05D000376 4.8e-06 54.7 114 36.0
PSO478G4282 Papaver somniferum HOM05D000501 ORTHO05D000376 4.8e-06 54.7 114 36.0
MSTRG.22824 Avicennia marina HOM05D000501 ORTHO05D000376 6.2e-06 54.3 83 47.0
Ciclev10030649m.g Citrus clementina HOM05D000501 ORTHO05D000376 6.2e-06 54.3 89 43.8


User provided reference genes

Program Settings