Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 1.4e-99 366.3 189 100.0
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 1.7e-60 236.5 159 75.5
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 1.1e-54 217.2 142 77.5
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 2.3e-54 216.1 159 69.2
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 2.3e-54 216.1 159 69.2
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 5.2e-54 214.9 142 75.4
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 2.0e-53 213.0 155 70.3
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 3.4e-53 212.2 137 76.6
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 7.5e-53 211.1 153 72.5
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 1.3e-52 210.3 142 73.9
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 2.2e-52 209.5 149 73.2
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 2.9e-52 209.1 137 76.6
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 3.7e-52 208.8 149 71.8
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 4.9e-52 208.4 141 76.6
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 4.9e-52 208.4 145 72.4
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 4.9e-52 208.4 137 76.6
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 6.4e-52 208.0 142 73.9
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 1.9e-51 206.5 139 71.9
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 5.4e-51 204.9 137 74.5
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 1.6e-50 203.4 137 74.5
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 2.7e-50 202.6 137 73.0
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 2.7e-50 202.6 137 75.2
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 2.7e-50 202.6 133 77.4
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 2.7e-50 202.6 137 72.3
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 6.0e-50 201.4 137 71.5
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 7.8e-50 201.1 142 70.4
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 7.8e-50 201.1 139 72.7
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 1.3e-49 200.3 137 72.3
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 1.3e-49 200.3 145 71.0
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 1.3e-49 200.3 138 73.9
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 1.7e-49 199.9 137 68.6
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 1.7e-49 199.9 144 72.2
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 1.7e-49 199.9 145 71.0
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 3.0e-49 199.1 146 69.2
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 3.0e-49 199.1 149 68.5
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 3.0e-49 199.1 137 71.5
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 3.0e-49 199.1 142 69.7
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 3.9e-49 198.7 149 68.5
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 6.6e-49 198.0 137 73.0
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 6.6e-49 198.0 151 68.9
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 6.6e-49 198.0 137 73.7
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 1.1e-48 197.2 149 68.5
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 1.1e-48 197.2 145 69.0
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 1.1e-48 197.2 137 70.1
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 1.9e-48 196.4 138 72.5
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 1.9e-48 196.4 137 72.3
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 1.9e-48 196.4 137 73.0
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 1.9e-48 196.4 142 69.0
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 2.5e-48 196.1 142 69.7
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 2.5e-48 196.1 137 73.0
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 2.5e-48 196.1 137 71.5
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 3.3e-48 195.7 139 71.9
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 3.3e-48 195.7 142 70.4
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 3.3e-48 195.7 158 63.9
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 4.3e-48 195.3 137 72.3
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 4.3e-48 195.3 137 70.1
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 5.6e-48 194.9 138 71.7
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 9.5e-48 194.1 139 69.1
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 1.2e-47 193.7 137 72.3
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 1.2e-47 193.7 137 72.3
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 1.2e-47 193.7 149 66.4
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 1.6e-47 193.4 142 69.0
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 2.8e-47 192.6 139 70.5
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 4.7e-47 191.8 142 68.3
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 6.2e-47 191.4 145 67.6
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 6.2e-47 191.4 139 70.5
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 6.2e-47 191.4 139 68.3
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 1.8e-46 189.9 137 65.7
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 2.0e-45 186.4 137 65.7
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 3.4e-45 185.7 147 63.3
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 5.8e-45 184.9 137 67.9
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 2.2e-44 183.0 137 65.7
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 2.9e-44 182.6 137 65.0
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 3.8e-44 182.2 137 65.7
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 3.8e-44 182.2 137 67.2
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 6.4e-44 181.4 141 68.1
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 3.2e-43 179.1 137 67.2
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 4.2e-43 178.7 141 64.5
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 4.2e-43 178.7 137 65.7
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 2.1e-42 176.4 137 67.9
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 2.7e-42 176.0 136 69.1
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 3.3e-40 169.1 138 64.5
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 7.3e-40 167.9 150 59.3
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 2.1e-39 166.4 145 60.7
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 3.1e-38 162.5 120 66.7
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 5.8e-37 158.3 110 67.3
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 1.7e-36 156.8 139 61.2
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 2.2e-36 156.4 144 53.5
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 2.2e-36 156.4 137 56.2
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 4.2e-35 152.1 99 75.8
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 1.9e-32 143.3 89 76.4
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 3.3e-32 142.5 137 56.9
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 5.6e-32 141.7 94 72.3
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 7.3e-32 141.4 137 57.7
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 2.1e-31 139.8 137 55.5
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 2.4e-30 136.3 86 76.7
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 9.0e-30 134.4 90 71.1
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 2.9e-28 129.4 101 61.4
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 1.1e-27 127.5 86 72.1
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 1.9e-27 126.7 142 52.8
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 7.1e-27 124.8 86 72.1
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 7.9e-18 94.7 86 58.1
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 8.7e-17 91.3 139 42.4
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 1.6e-15 87.0 67 62.7
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 4.8e-15 85.5 140 40.7
TWI56G1164 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 2.5e-11 73.2 49 73.5
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 6.7e-09 65.1 43 74.4
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 6.9e-06 55.1 48 54.2


User provided reference genes

Program Settings