Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn071s42393 Nelumbo nucifera HOM05D001033 ORTHO05D002045 1.1e-62 243.0 121 100.0
Nn021s41547 Nelumbo nucifera HOM05D001033 ORTHO05D002045 4.1e-60 234.6 132 91.7
PGR111G0012 Punica granatum HOM05D001033 ORTHO05D002045 9.4e-57 223.4 132 86.4
Dinv29306 Davidia involucrata HOM05D000680 ORTHO05D000738 8.8e-55 216.9 132 84.8
HanXRQChr00c0702g0576861 Helianthus annuus HOM05D001033 ORTHO05D002045 1.7e-53 212.6 132 81.8
HanXRQChr02g0044941 Helianthus annuus HOM05D001033 ORTHO05D002045 1.7e-53 212.6 132 81.8
HanXRQChr07g0201001 Helianthus annuus HOM05D001033 ORTHO05D002045 1.7e-53 212.6 132 81.8
HanXRQChr10g0283501 Helianthus annuus HOM05D001033 ORTHO05D002045 1.7e-53 212.6 132 81.8
HanXRQChr11g0326771 Helianthus annuus HOM05D001033 ORTHO05D002045 1.7e-53 212.6 132 81.8
HanXRQCPg0579981 Helianthus annuus HOM05D001033 ORTHO05D002045 1.7e-53 212.6 132 81.8
PSO548G0127 Papaver somniferum HOM05D001033 ORTHO05D002045 2.2e-53 212.2 132 84.1
HanXRQChr02g0041511 Helianthus annuus HOM05D001033 ORTHO05D002045 3.7e-53 211.5 132 81.1
HanXRQChr10g0300281 Helianthus annuus HOM05D001033 ORTHO05D002045 4.8e-53 211.1 132 81.1
SabraPtG0003100 Salix brachista HOM05D001033 ORTHO05D002045 8.2e-53 210.3 132 81.8
Migut.D01428 Erythranthe guttata HOM05D001033 ORTHO05D002045 1.4e-52 209.5 132 81.8
Peaxi162Scf00334g01211 Petunia axillaris HOM05D001033 ORTHO05D002045 1.8e-52 209.1 132 81.1
RcHm_v2.0_CPg0502171 Rosa chinensis HOM05D001033 ORTHO05D002045 1.8e-52 209.1 132 82.6
Sed0012509 Sechium edule HOM05D001033 ORTHO05D002045 3.1e-52 208.4 133 82.7
Potri.013G163100 Populus trichocarpa HOM05D001033 ORTHO05D002045 9.1e-52 206.8 132 81.1
EL10As5g23625 Beta vulgaris HOM05D001033 ORTHO05D002045 1.6e-51 206.1 134 82.1
Solyc00g500062.1 Solanum lycopersicum HOM05D001033 ORTHO05D002045 1.6e-51 206.1 132 81.1
DCAR_032488 Daucus carota HOM05D001033 ORTHO05D002045 5.9e-51 204.1 132 80.3
PSO170G0878 Papaver somniferum HOM05D001033 ORTHO05D002045 7.7e-51 203.8 131 81.7
Gohir.1Z049499 Gossypium hirsutum HOM05D001033 ORTHO05D002045 1.0e-50 203.4 132 81.1
CAN.G219.26 Capsicum annuum HOM05D001033 ORTHO05D002045 1.7e-50 202.6 132 80.3
Lalb_Chr03g0039381 Lupinus albus HOM05D001033 ORTHO05D002045 6.5e-50 200.7 136 78.7
Lalb_Chr07g0192291 Lupinus albus HOM05D001033 ORTHO05D002045 6.5e-50 200.7 136 78.7
Gohir.A09G102200 Gossypium hirsutum HOM05D001033 ORTHO05D002045 1.5e-49 199.5 132 79.5
Lsat_1_v5_gn_3_99221 Lactuca sativa HOM05D001033 ORTHO05D004888 1.9e-49 199.1 129 79.1
Lsat_1_v5_gn_3_99300 Lactuca sativa HOM05D001033 ORTHO05D004888 1.9e-49 199.1 129 79.1
Lsat_1_v5_gn_4_40440 Lactuca sativa HOM05D001033 ORTHO05D004888 1.9e-49 199.1 129 79.1
Thhalv10011105m.g Eutrema salsugineum HOM05D001033 ORTHO05D002045 1.2e-48 196.4 131 78.6
Ah.10g027540 Amaranthus hybridus HOM05D001033 ORTHO05D002045 1.6e-48 196.1 134 79.9
ATR0303G003 Amborella trichopoda HOM05D001033 ORTHO05D004888 4.7e-48 194.5 122 81.1
ATCG00430 Arabidopsis thaliana HOM05D001033 ORTHO05D002045 6.1e-48 194.1 132 78.0
BNapus_Darmor_BZH_scaffold_253p00170 Brassica napus HOM05D001033 ORTHO05D002045 6.1e-48 194.1 132 78.0
BNapus_Darmor_BZH_scaffold_287p00090 Brassica napus HOM05D001033 ORTHO05D002045 6.1e-48 194.1 132 78.0
C02p43480 Brassica napus HOM05D001033 ORTHO05D002045 6.1e-48 194.1 132 78.0
C09p40490 Brassica napus HOM05D001033 ORTHO05D002045 6.1e-48 194.1 132 78.0
BraA06t25426Z Brassica rapa HOM05D001033 ORTHO05D002045 6.1e-48 194.1 132 78.0
BraSC25t45842Z Brassica rapa HOM05D001033 ORTHO05D002045 6.1e-48 194.1 132 78.0
BraSC25t45873Z Brassica rapa HOM05D001033 ORTHO05D002045 6.1e-48 194.1 132 78.0
BraSC58t46414Z Brassica rapa HOM05D001033 ORTHO05D002045 6.1e-48 194.1 132 78.0
BraSC58t46485Z Brassica rapa HOM05D001033 ORTHO05D002045 6.1e-48 194.1 132 78.0
BcaC04g20697 Brassica carinata HOM05D001033 ORTHO05D002045 8.0e-48 193.7 132 77.3
Lj2C1237T30 Lonicera japonica HOM05D001033 ORTHO05D004888 1.0e-47 193.4 121 81.8
Lj2C1239T8 Lonicera japonica HOM05D001033 ORTHO05D004888 1.0e-47 193.4 121 81.8
AL2G20700 Arabidopsis lyrata HOM05D001033 ORTHO05D002045 3.0e-47 191.8 132 77.3
AL2G21110 Arabidopsis lyrata HOM05D001033 ORTHO05D002045 3.0e-47 191.8 132 77.3
AL2G21470 Arabidopsis lyrata HOM05D001033 ORTHO05D002045 3.0e-47 191.8 132 77.3
AUR62014217 Chenopodium quinoa HOM05D001033 ORTHO05D002045 4.0e-47 191.4 129 76.0
Oeu012835.1 Olea europaea HOM05D001033 ORTHO05D002045 4.0e-47 191.4 132 75.0
Medtr4g051225 Medicago truncatula HOM05D001033 ORTHO05D002045 5.2e-47 191.0 122 79.5
Medtr7g021790 Medicago truncatula HOM05D001033 ORTHO05D002045 5.2e-47 191.0 122 79.5
EL10As12g24022 Beta vulgaris HOM05D001033 ORTHO05D004888 6.8e-47 190.7 125 80.8
EL10As1g23049 Beta vulgaris HOM05D001033 ORTHO05D004888 6.8e-47 190.7 125 80.8
A06p23240 Brassica napus HOM05D001033 ORTHO05D002045 1.2e-46 189.9 132 77.3
CARHR282050 Cardamine hirsuta HOM05D001033 ORTHO05D002045 2.0e-46 189.1 132 76.5
COL.COLO4_03116 Corchorus olitorius HOM05D001033 ORTHO05D002045 2.6e-46 188.7 122 80.3
arahy.Tifrunner.gnm1.ann1.L3ACWX Arachis hypogaea HOM05D001033 ORTHO05D002045 7.5e-46 187.2 122 78.7
BcaC05g28797 Brassica carinata HOM05D001033 ORTHO05D002045 1.1e-44 183.3 129 74.4
Zm00001eb039200 Zea mays HOM05D001033 ORTHO05D002045 1.4e-44 183.0 134 73.9
Zm00001eb435030 Zea mays HOM05D001033 ORTHO05D002045 1.4e-44 183.0 134 73.9
Zm00001eb435210 Zea mays HOM05D001033 ORTHO05D002045 1.4e-44 183.0 134 73.9
Zm00001eb435670 Zea mays HOM05D001033 ORTHO05D002045 1.4e-44 183.0 134 73.9
Zm00001eb437200 Zea mays HOM05D001033 ORTHO05D002045 1.4e-44 183.0 134 73.9
Zm00001eb440980 Zea mays HOM05D001033 ORTHO05D002045 1.4e-44 183.0 134 73.9
Gohir.D01G102255 Gossypium hirsutum HOM05D001033 ORTHO05D002045 2.4e-44 182.2 122 79.5
Nitab4.5_0001761g0190 Nicotiana tabacum HOM05D001033 ORTHO05D004888 2.4e-44 182.2 129 73.6
MD09G1196100 Malus domestica HOM05D001033 ORTHO05D002045 1.2e-43 179.9 142 69.7
LjContig00318g0025596 Lotus japonicus HOM05D001033 ORTHO05D004888 2.7e-43 178.7 125 72.8
Lsat_1_v5_gn_2_5601 Lactuca sativa HOM05D001033 ORTHO05D004888 3.5e-43 178.3 129 72.1
Gohir.D07G155032 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.0e-42 176.8 121 76.9
VMungo0498G0004 Vigna mungo HOM05D001033 ORTHO05D002045 1.0e-42 176.8 118 76.3
Oeu003950.1 Olea europaea HOM05D001033 ORTHO05D002045 2.2e-42 175.6 130 71.5
Lj2C1239T58 Lonicera japonica HOM05D001033 ORTHO05D004888 3.8e-42 174.9 121 76.9
TWI53G1242 Tripterygium wilfordii HOM05D001033 ORTHO05D002045 2.1e-40 169.1 112 77.7
PGSC0003DMG400006986 Solanum tuberosum HOM05D001033 ORTHO05D002045 2.8e-40 168.7 118 75.4
unitig_91.g26505 Utricularia gibba HOM05D001033 ORTHO05D002045 8.0e-40 167.2 117 74.4
HanXRQChr01g0020401 Helianthus annuus HOM05D001033 ORTHO05D002045 2.0e-38 162.5 132 67.4
HanXRQChr08g0210311 Helianthus annuus HOM05D001033 ORTHO05D002045 2.0e-38 162.5 132 67.4
HanXRQChr10g0289221 Helianthus annuus HOM05D001033 ORTHO05D002045 2.0e-38 162.5 132 67.4
Zm00001eb133180 Zea mays HOM05D001033 ORTHO05D002045 2.6e-38 162.2 124 71.8
EL10As15g24143 Beta vulgaris HOM05D001033 ORTHO05D004888 3.7e-37 158.3 131 67.9
Gohir.A06G136700 Gossypium hirsutum HOM05D001033 ORTHO05D002045 8.3e-37 157.1 113 76.1
HanXRQChr00c0345g0573901 Helianthus annuus HOM05D001033 ORTHO05D002045 2.4e-36 155.6 102 77.5
BcaB02g11351 Brassica carinata HOM05D001033 ORTHO05D002045 9.2e-36 153.7 115 73.0
ClCG03G005460 Citrullus lanatus HOM05D001033 ORTHO05D002045 2.7e-35 152.1 97 80.4
BolSC49t61188H Brassica oleracea HOM05D001033 ORTHO05D002045 3.8e-34 148.3 127 67.7
Lj4g0025955 Lotus japonicus HOM05D001033 ORTHO05D004888 3.8e-34 148.3 122 64.8
BcaC03g15270 Brassica carinata HOM05D001033 ORTHO05D002045 5.0e-34 147.9 132 64.4
Nn1g03018 Nelumbo nucifera HOM05D001033 ORTHO05D002045 1.9e-33 146.0 87 87.4
BolC7t41723H Brassica oleracea HOM05D001033 ORTHO05D002045 1.2e-30 136.7 94 75.5
Lalb_Chr07g0192231 Lupinus albus HOM05D001033 ORTHO05D004888 5.7e-30 134.4 95 75.8
BolSC29t60583H Brassica oleracea HOM05D001033 ORTHO05D002045 7.5e-30 134.0 87 79.3
Solyc06g036210.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 1.3e-29 133.3 83 79.5
HanXRQChr00c0759g0577231 Helianthus annuus HOM05D001033 ORTHO05D004888 3.7e-29 131.7 83 79.5
BolSC45t60864H Brassica oleracea HOM05D001033 ORTHO05D002045 1.1e-28 130.2 105 70.5
Eucgr.A02746 Eucalyptus grandis HOM05D001033 ORTHO05D002045 7.0e-28 127.5 99 69.7
Os03g0639233 Oryza sativa ssp. japonica HOM05D001033 ORTHO05D002045 2.0e-27 125.9 113 61.9
Zm00001eb039090 Zea mays HOM05D001033 ORTHO05D002045 2.7e-27 125.6 93 73.1
Zm00001eb039120 Zea mays HOM05D001033 ORTHO05D002045 2.7e-27 125.6 93 73.1
Zm00001eb435410 Zea mays HOM05D001033 ORTHO05D002045 2.7e-27 125.6 93 73.1
SEGI_24100 Sequoiadendron giganteum HOM05D001387 ORTHO05D001250 1.0e-26 123.6 121 57.9
Sed0007524 Sechium edule HOM05D000680 ORTHO05D000738 5.0e-26 121.3 79 81.0
Sed0011576 Sechium edule HOM05D001033 ORTHO05D004888 5.0e-26 121.3 79 81.0
Sed0016230 Sechium edule HOM05D001033 ORTHO05D004888 5.0e-26 121.3 79 81.0
Sed0017991 Sechium edule HOM05D001033 ORTHO05D002045 5.0e-26 121.3 79 81.0
Sed0021529 Sechium edule HOM05D001033 ORTHO05D002045 5.0e-26 121.3 79 81.0
Hund10567 Selenicereus undatus HOM05D001033 ORTHO05D004888 1.1e-25 120.2 130 54.6
Hund10570 Selenicereus undatus HOM05D001033 ORTHO05D002045 2.5e-25 119.0 126 55.6
SEGI_38281 Sequoiadendron giganteum HOM05D001033 ORTHO05D002045 3.3e-25 118.6 90 67.8
Sed0003172 Sechium edule HOM05D001033 ORTHO05D002045 7.3e-25 117.5 117 58.1
BolSC47t61121H Brassica oleracea HOM05D001033 ORTHO05D002045 1.2e-24 116.7 87 72.4
PSO302G0237 Papaver somniferum HOM05D001033 ORTHO05D004888 1.8e-23 112.8 79 77.2
BolSC46t60994H Brassica oleracea HOM05D001033 ORTHO05D004888 3.1e-23 112.1 76 77.6
BolSC46t61041H Brassica oleracea HOM05D001033 ORTHO05D004888 3.1e-23 112.1 76 77.6
BolSC47t61103H Brassica oleracea HOM05D001033 ORTHO05D004888 3.1e-23 112.1 76 77.6
SalBow1G1163 Salvia bowleyana HOM05D001033 ORTHO05D002045 6.8e-23 110.9 113 59.3
CAN.G129.7 Capsicum annuum HOM05D001033 ORTHO05D002045 8.9e-23 110.5 75 78.7
Duzib192G0593 Durio zibethinus HOM05D001033 ORTHO05D004888 1.2e-22 110.2 79 74.7
arahy.Tifrunner.gnm1.ann1.XVSZ20 Arachis hypogaea HOM05D001033 ORTHO05D004888 4.4e-22 108.2 74 78.4
Migut.I00279 Erythranthe guttata HOM05D001033 ORTHO05D004888 2.4e-20 102.4 59 81.4
Migut.I00284 Erythranthe guttata HOM05D001033 ORTHO05D004888 2.4e-20 102.4 59 81.4
Migut.I00294 Erythranthe guttata HOM05D001033 ORTHO05D004888 2.4e-20 102.4 59 81.4
SEGI_31017 Sequoiadendron giganteum HOM05D001033 ORTHO05D002045 3.2e-20 102.1 71 74.6
Os12g0423484 Oryza sativa ssp. japonica HOM05D001033 ORTHO05D002045 1.2e-19 100.1 68 70.6
Migut.I00290 Erythranthe guttata HOM05D001033 ORTHO05D004888 1.6e-19 99.8 59 79.7
MBI06_g39081_MAGBIO Magnolia biondii HOM05D001033 ORTHO05D004888 1.6e-19 99.8 133 51.9
Solyc12g035750.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 1.6e-19 99.8 109 56.0
SEGI_01326 Sequoiadendron giganteum HOM05D015639 ORTHO05D020995 2.7e-19 99.0 121 49.6
BolSC45t60947H Brassica oleracea HOM05D001033 ORTHO05D004888 3.5e-19 98.6 72 72.2
SEGI_09380 Sequoiadendron giganteum HOM05D001033 ORTHO05D002045 1.0e-18 97.1 108 52.8
SMO086G0052 Selaginella moellendorffii HOM05D001033 ORTHO05D002045 3.0e-18 95.5 87 60.9
SMO086G0063 Selaginella moellendorffii HOM05D001033 ORTHO05D002045 3.0e-18 95.5 87 60.9
Gorai.005G120500 Gossypium raimondii HOM05D001033 ORTHO05D005438 3.9e-18 95.1 76 67.1
Sc19g0005990 Simmondsia chinensis HOM05D001033 ORTHO05D002045 6.6e-18 94.4 68 73.5
Gohir.A02G100800 Gossypium hirsutum HOM05D001033 ORTHO05D002045 8.6e-18 94.0 62 80.6
Sed0015951 Sechium edule HOM05D000680 ORTHO05D000738 1.1e-17 93.6 79 67.1
Oeu028783.1 Olea europaea HOM05D001033 ORTHO05D002045 1.9e-17 92.8 75 69.3
HanXRQChr17g0542241 Helianthus annuus HOM05D001033 ORTHO05D002045 1.6e-16 89.7 59 79.7
Medtr0002s0630 Medicago truncatula HOM05D001033 ORTHO05D004888 1.6e-16 89.7 60 78.3
CARHR287120 Cardamine hirsuta HOM05D001033 ORTHO05D002045 3.6e-16 88.6 76 68.4
Lsat_1_v5_gn_3_130301 Lactuca sativa HOM05D001133 ORTHO05D000941 2.3e-15 85.9 96 53.1
Lsat_1_v5_gn_5_7520 Lactuca sativa HOM05D001033 ORTHO05D002045 4.0e-15 85.1 41 95.1
Cpa.g.c44530 Carica papaya HOM05D001033 ORTHO05D002045 1.2e-14 83.6 42 92.9
Lj2C1237T16 Lonicera japonica HOM05D001033 ORTHO05D002045 1.2e-14 83.6 112 52.7
Migut.J01349 Erythranthe guttata HOM05D001033 ORTHO05D004888 2.6e-14 82.4 108 49.1
Nitab4.5_0000058g0260 Nicotiana tabacum HOM05D001033 ORTHO05D002045 9.8e-14 80.5 39 97.4
CAN.G100.48 Capsicum annuum HOM05D001033 ORTHO05D004888 2.2e-13 79.3 59 69.5
FAN19G1312 Fragaria x ananassa HOM05D001033 ORTHO05D002045 6.4e-13 77.8 39 92.3
SEGI_38984 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 6.4e-13 77.8 61 68.9
SGA_v2.0_scaffold12G06115 Striga asiatica HOM05D001033 ORTHO05D002045 6.4e-13 77.8 36 100.0
EL10Ac9g20714 Beta vulgaris HOM05D001033 ORTHO05D002045 1.4e-12 76.6 72 62.5
Gohir.D02G095250 Gossypium hirsutum HOM05D001033 ORTHO05D002045 1.9e-12 76.3 42 83.3
Gorai.005G108900 Gossypium raimondii HOM05D001033 ORTHO05D002045 1.9e-12 76.3 42 83.3
Gorai.002G151900 Gossypium raimondii HOM05D001033 ORTHO05D002045 3.2e-12 75.5 58 69.0
Os12g0423313 Oryza sativa ssp. japonica HOM05D001033 ORTHO05D002045 3.2e-12 75.5 57 64.9
Glyma.08G050600 Glycine max HOM05D001033 ORTHO05D002045 7.1e-12 74.3 59 67.8
MBI18_g11243_MAGBIO Magnolia biondii HOM05D001033 ORTHO05D002045 7.1e-12 74.3 42 81.0
Nitab4.5_0006673g0040 Nicotiana tabacum HOM05D001033 ORTHO05D002045 7.1e-12 74.3 59 72.9
vmacro22414 Vaccinium macrocarpon HOM05D001033 ORTHO05D004888 7.1e-12 74.3 55 76.4
MBI18_g11245_MAGBIO Magnolia biondii HOM05D001033 ORTHO05D002045 9.2e-12 73.9 43 83.7
Solyc02g063080.1 Solanum lycopersicum HOM05D001033 ORTHO05D002045 9.2e-12 73.9 55 70.9
HanXRQChr10g0285311 Helianthus annuus HOM05D001033 ORTHO05D002045 3.5e-11 72.0 33 100.0
ATR0329G060 Amborella trichopoda HOM05D001033 ORTHO05D002045 4.6e-11 71.6 42 76.2
Gorai.005G187900 Gossypium raimondii HOM05D001033 ORTHO05D004888 2.5e-09 65.9 39 79.5
Phvul.011G056532 Phaseolus vulgaris HOM05D001033 ORTHO05D002045 9.5e-09 63.9 29 100.0
MELO3C035665.2 Cucumis melo HOM05D001033 ORTHO05D002045 2.1e-08 62.8 29 100.0
EL10Ac5g11369 Beta vulgaris HOM05D001033 ORTHO05D002045 3.1e-07 58.9 45 64.4
Nn263s45943 Nelumbo nucifera HOM05D001033 ORTHO05D002045 1.2e-06 57.0 34 79.4
Dinv27974 Davidia involucrata HOM05D001033 ORTHO05D002045 9.9e-06 53.9 65 44.6
Peaxi162Scf00038g01323 Petunia axillaris HOM05D001033 ORTHO05D002045 9.9e-06 53.9 65 44.6


User provided reference genes

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