Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 8.7e-251 869.8 423 100.0
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 8.3e-217 756.9 421 90.0
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 6.8e-211 737.3 377 93.6
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 9.8e-210 733.4 379 92.3
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 4.9e-209 731.1 377 93.1
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 1.1e-208 729.9 380 93.2
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 7.0e-208 727.2 377 92.6
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 1.2e-207 726.5 377 91.8
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 1.6e-207 726.1 377 92.0
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 2.0e-207 725.7 377 92.0
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 4.5e-207 724.5 377 92.3
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 5.9e-207 724.2 377 91.2
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 1.0e-206 723.4 378 91.3
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 1.7e-206 722.6 378 91.0
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 2.9e-206 721.8 380 92.1
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 3.8e-206 721.5 379 91.3
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 5.0e-206 721.1 379 91.8
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 6.6e-206 720.7 379 91.6
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 6.6e-206 720.7 379 91.8
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 1.1e-205 719.9 379 91.0
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.1e-205 719.9 380 91.8
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 1.5e-205 719.5 379 91.6
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 1.9e-205 719.2 379 91.8
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 3.3e-205 718.4 379 91.3
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 3.3e-205 718.4 381 90.8
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 3.3e-205 718.4 379 91.0
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 1.2e-204 716.5 377 91.0
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 1.6e-204 716.1 379 91.3
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 2.1e-204 715.7 379 91.0
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 2.1e-204 715.7 377 90.7
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 3.6e-204 714.9 377 91.5
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 3.6e-204 714.9 378 89.4
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 3.6e-204 714.9 378 89.7
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 4.7e-204 714.5 379 91.0
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 4.7e-204 714.5 377 90.7
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 4.7e-204 714.5 379 90.8
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 6.1e-204 714.1 379 91.0
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 6.1e-204 714.1 379 91.0
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 6.1e-204 714.1 379 90.2
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 8.0e-204 713.8 379 90.8
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 8.0e-204 713.8 379 90.8
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 8.0e-204 713.8 378 89.7
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 1.0e-203 713.4 378 89.4
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 1.4e-203 713.0 377 88.6
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 1.8e-203 712.6 379 90.5
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 1.8e-203 712.6 381 89.5
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 1.8e-203 712.6 377 90.2
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 3.0e-203 711.8 379 90.5
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 4.0e-203 711.4 377 89.4
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 5.2e-203 711.1 379 91.3
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 5.2e-203 711.1 379 90.2
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 5.2e-203 711.1 377 90.7
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 6.8e-203 710.7 377 89.7
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 8.9e-203 710.3 379 91.0
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 8.9e-203 710.3 379 90.2
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 1.2e-202 709.9 378 89.7
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 1.5e-202 709.5 377 90.5
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 2.0e-202 709.1 424 81.6
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 2.6e-202 708.8 377 90.5
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 2.6e-202 708.8 379 90.5
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 2.6e-202 708.8 379 90.8
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 2.6e-202 708.8 379 90.2
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 3.4e-202 708.4 377 89.4
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 3.4e-202 708.4 378 89.2
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 4.4e-202 708.0 379 89.7
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 4.4e-202 708.0 379 89.7
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 7.5e-202 707.2 378 88.9
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 9.8e-202 706.8 379 90.5
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 2.9e-201 705.3 380 90.3
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 4.9e-201 704.5 377 89.9
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 6.4e-201 704.1 381 89.5
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 6.4e-201 704.1 393 87.3
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 1.1e-200 703.4 377 89.1
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.8e-200 702.6 377 89.7
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 1.8e-200 702.6 379 91.3
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 2.4e-200 702.2 377 87.5
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 4.1e-200 701.4 380 89.2
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 1.2e-199 699.9 377 89.1
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 1.6e-199 699.5 379 89.4
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 2.0e-199 699.1 423 82.5
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 3.5e-199 698.4 377 88.9
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 4.6e-199 698.0 380 87.9
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 4.6e-199 698.0 380 88.2
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 4.6e-199 698.0 380 87.9
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 4.6e-199 698.0 377 88.1
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 5.9e-199 697.6 380 87.6
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 7.8e-199 697.2 380 88.4
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 1.0e-198 696.8 380 88.2
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 1.7e-198 696.0 380 88.2
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 3.0e-198 695.3 380 87.9
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 3.9e-198 694.9 380 88.4
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 8.6e-198 693.7 379 87.9
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 8.6e-198 693.7 380 87.6
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 1.1e-197 693.3 380 87.9
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 1.5e-197 693.0 377 87.5
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 1.5e-197 693.0 380 87.4
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 1.9e-197 692.6 392 86.0
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 2.5e-197 692.2 380 86.8
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 5.6e-197 691.0 379 86.5
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 7.3e-197 690.6 379 87.1
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 1.2e-196 689.9 380 87.1
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 1.6e-196 689.5 379 86.8
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 4.7e-196 688.0 380 86.3
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 6.2e-196 687.6 381 87.7
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 6.2e-196 687.6 379 85.5
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 1.4e-195 686.4 381 87.1
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 1.4e-195 686.4 381 87.1
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 3.1e-195 685.3 379 85.0
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 4.0e-195 684.9 444 77.5
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 6.8e-195 684.1 379 85.2
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 3.4e-194 681.8 377 85.1
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 5.8e-194 681.0 404 82.4
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 1.3e-193 679.9 379 84.4
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 1.9e-189 666.0 487 70.4
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 8.9e-187 657.1 419 75.4
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 2.0e-186 656.0 388 82.7
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 2.6e-186 655.6 381 82.9
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 9.2e-184 647.1 381 84.0
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 3.6e-180 635.2 329 91.8
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 2.6e-178 629.0 380 78.2
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 3.2e-176 622.1 317 93.4
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 2.1e-175 619.4 372 79.8
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 2.7e-175 619.0 329 89.7
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 3.0e-174 615.5 329 88.8
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 3.3e-173 612.1 373 79.1
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 5.8e-170 601.3 379 78.9
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 1.5e-165 586.6 412 68.4
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 1.4e-163 580.1 383 71.8
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 6.9e-163 577.8 379 73.6
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 9.9e-162 573.9 353 74.8
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 1.3e-161 573.5 379 76.3
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 2.8e-156 555.8 361 72.6
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.4e-152 543.5 361 75.6
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 2.5e-144 516.2 304 83.9
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 7.1e-144 514.6 380 70.3
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 2.2e-132 476.5 245 93.1
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 8.2e-132 474.6 373 61.7
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 1.6e-127 460.3 255 85.9
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 1.2e-119 434.1 238 87.8
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 1.7e-116 423.7 227 89.4
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 1.4e-115 420.6 341 61.3
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 1.0e-113 414.5 356 58.1
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 5.3e-107 392.1 239 79.9
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 1.1e-83 314.7 167 89.8
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 3.9e-73 279.6 393 43.0
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 3.4e-69 266.5 360 43.3
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 4.4e-61 239.6 154 76.6
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 8.1e-55 218.8 152 69.7
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 1.2e-53 214.9 121 82.6
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 9.3e-51 205.3 130 79.2
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 1.7e-44 184.5 114 74.6
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 2.9e-44 183.7 113 75.2
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 2.4e-22 110.9 128 50.0
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 3.8e-20 103.6 58 79.3
Nn4g23409 Nelumbo nucifera HOM05D043904 ORTHO05D270810 3.9e-17 93.6 45 93.3
Lsat_1_v5_gn_9_118621 Lactuca sativa HOM05D006894 ORTHO05D008724 8.5e-12 75.9 313 23.6
PGR042G0448 Punica granatum HOM05D006894 ORTHO05D008724 2.7e-10 70.9 301 22.9


User provided reference genes

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