Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn020s41492 Nelumbo nucifera HOM05D008622 ORTHO05D010757 1.9e-40 168.7 84 100.0
PSO548G0027 Papaver somniferum HOM05D008622 ORTHO05D010757 6.1e-39 163.7 84 97.6
CAN.G612.10 Capsicum annuum HOM05D008622 ORTHO05D010757 3.2e-35 151.4 84 91.7
CAN.G877.8 Capsicum annuum HOM05D008622 ORTHO05D010757 2.7e-34 148.3 84 90.5
DCAR_032466 Daucus carota HOM05D008622 ORTHO05D010757 4.6e-34 147.5 78 92.3
PGR111G0016 Punica granatum HOM05D008622 ORTHO05D010757 7.8e-34 146.7 84 85.7
Sed0001678 Sechium edule HOM05D008622 ORTHO05D010757 5.0e-33 144.1 84 85.7
Sed0011032 Sechium edule HOM05D008622 ORTHO05D010757 5.0e-33 144.1 84 85.7
Sed0018360 Sechium edule HOM05D008622 ORTHO05D010757 5.0e-33 144.1 84 85.7
C06p21400 Brassica napus HOM05D008622 ORTHO05D010757 2.8e-31 138.3 84 84.5
BolSC37t60776H Brassica oleracea HOM05D008622 ORTHO05D010757 2.8e-31 138.3 84 84.5
BolSC45t60930H Brassica oleracea HOM05D008622 ORTHO05D010757 2.8e-31 138.3 84 84.5
BraSC25t45888Z Brassica rapa HOM05D008622 ORTHO05D010757 2.8e-31 138.3 84 84.5
BraSC59t46518Z Brassica rapa HOM05D008622 ORTHO05D010757 2.8e-31 138.3 84 84.5
Gohir.1Z050166 Gossypium hirsutum HOM05D008622 ORTHO05D010757 1.4e-30 136.0 84 83.3
Peaxi162Scf00110g00044 Petunia axillaris HOM05D008622 ORTHO05D010757 5.2e-30 134.0 70 92.9
LjContig00318g0003846 Lotus japonicus HOM05D008622 ORTHO05D010757 8.9e-30 133.3 80 83.8
ATCG00050 Arabidopsis thaliana HOM05D008622 ORTHO05D010757 1.3e-28 129.4 79 81.0
MELO3C028501.2 Cucumis melo HOM05D008622 ORTHO05D010757 4.6e-26 120.9 61 93.4
Glyma.16G088900 Glycine max HOM05D008622 ORTHO05D010757 2.3e-25 118.6 69 81.2
LjContig00489g0025793 Lotus japonicus HOM05D008622 ORTHO05D010757 8.6e-25 116.7 69 84.1
CARHR281850 Cardamine hirsuta HOM05D008622 ORTHO05D010757 2.5e-24 115.2 68 80.9
HanXRQChr00c0496g0575161 Helianthus annuus HOM05D008622 ORTHO05D010757 4.3e-24 114.4 58 93.1
CiPaw.06G085000 Carya illinoinensis HOM05D008622 ORTHO05D010757 1.6e-23 112.5 71 78.9
Gohir.A12G078500 Gossypium hirsutum HOM05D008622 ORTHO05D010757 2.1e-23 112.1 63 85.7
Thhalv10028241m.g Eutrema salsugineum HOM05D008622 ORTHO05D010757 1.1e-22 109.8 63 85.7
Thhalv10001859m.g Eutrema salsugineum HOM05D008622 ORTHO05D010757 1.4e-22 109.4 64 87.5
Gohir.D08G095680 Gossypium hirsutum HOM05D008622 ORTHO05D010757 1.8e-22 109.0 84 70.2
Glyma.15G248550 Glycine max HOM05D008622 ORTHO05D010757 8.9e-22 106.7 61 86.9
Gorai.012G044100 Gossypium raimondii HOM05D008622 ORTHO05D010757 8.9e-22 106.7 58 86.2
Migut.H01168 Erythranthe guttata HOM05D008622 ORTHO05D010757 2.0e-21 105.5 61 82.0
BolSC49t61205H Brassica oleracea HOM05D008622 ORTHO05D010757 4.4e-21 104.4 60 90.0
Gorai.001G180700 Gossypium raimondii HOM05D008622 ORTHO05D010757 7.5e-21 103.6 56 87.5
BolSC29t60522H Brassica oleracea HOM05D008622 ORTHO05D010757 1.7e-20 102.4 61 86.9
BolSC44t60843H Brassica oleracea HOM05D008622 ORTHO05D010757 4.9e-20 100.9 59 88.1
BolSC45t60884H Brassica oleracea HOM05D008622 ORTHO05D010757 4.9e-20 100.9 59 88.1
BolSC46t60979H Brassica oleracea HOM05D008622 ORTHO05D010757 4.9e-20 100.9 59 88.1
Gohir.D06G105260 Gossypium hirsutum HOM05D008622 ORTHO05D010757 4.6e-18 94.4 56 78.6
Gorai.003G055400 Gossypium raimondii HOM05D008622 ORTHO05D010757 1.3e-17 92.8 47 93.6
CiPaw.01G059700 Carya illinoinensis HOM05D008622 ORTHO05D010757 2.3e-17 92.0 60 75.0
Sed0025419 Sechium edule HOM05D008622 ORTHO05D010757 4.3e-16 87.8 78 60.3
Solyc02g011995.1 Solanum lycopersicum HOM05D008622 ORTHO05D010757 4.7e-15 84.3 47 85.1
MCO08G152 Micromonas commoda HOM05D003175 ORTHO05D010757 5.2e-14 80.9 74 52.7
Nitab4.5_0016174g0030 Nicotiana tabacum HOM05D001325 ORTHO05D001540 5.8e-13 77.4 60 65.0
Cre12.g494450 Chlamydomonas reinhardtii HOM05D003175 ORTHO05D010757 9.9e-13 76.6 77 49.4
Nitab4.5_0004864g0050 Nicotiana tabacum HOM05D000540 ORTHO05D000681 1.7e-12 75.9 41 87.8
Nn4g25758 Nelumbo nucifera HOM05D008622 ORTHO05D010757 3.8e-12 74.7 37 94.6
ClCG00G002380 Citrullus lanatus HOM05D008622 ORTHO05D010757 4.9e-12 74.3 35 97.1
Potri.013G128200 Populus trichocarpa HOM05D003175 ORTHO05D003591 1.3e-09 66.2 78 47.4
Sabra13G0107100 Salix brachista HOM05D003175 ORTHO05D003591 1.3e-09 66.2 78 47.4
Carub.0007s0566 Capsella rubella HOM05D003175 ORTHO05D003591 3.9e-09 64.7 78 43.6
AL7G16580 Arabidopsis lyrata HOM05D003175 ORTHO05D003591 5.1e-09 64.3 78 43.6
BcaNung00682 Brassica carinata HOM05D003175 ORTHO05D003591 5.1e-09 64.3 78 43.6
BcaNung04917 Brassica carinata HOM05D003175 ORTHO05D003591 5.1e-09 64.3 78 43.6
BcaNung04920 Brassica carinata HOM05D003175 ORTHO05D003591 5.1e-09 64.3 78 43.6
A01p03870 Brassica napus HOM05D003175 ORTHO05D003591 5.1e-09 64.3 78 43.6
C01p04180 Brassica napus HOM05D003175 ORTHO05D003591 5.1e-09 64.3 78 43.6
BolC1t00406H Brassica oleracea HOM05D003175 ORTHO05D003591 5.1e-09 64.3 78 43.6
BraA01t00374Z Brassica rapa HOM05D003175 ORTHO05D003591 5.1e-09 64.3 78 43.6
Aa31LG2G15900 Aethionema arabicum HOM05D003175 ORTHO05D003591 1.1e-08 63.2 79 43.0
AT4G34620 Arabidopsis thaliana HOM05D003175 ORTHO05D003591 1.5e-08 62.8 78 42.3
Manes.05G131300 Manihot esculenta HOM05D003175 ORTHO05D003591 3.3e-08 61.6 74 41.9
Thhalv10026606m.g Eutrema salsugineum HOM05D003175 ORTHO05D003591 5.6e-08 60.8 79 40.5
Pp3c11_14140 Physcomitrium patens HOM05D003175 ORTHO05D003591 7.3e-08 60.5 80 42.5
Sp7g32410 Schrenkiella parvula HOM05D003175 ORTHO05D003591 7.3e-08 60.5 78 41.0
BraSC58t46475Z Brassica rapa HOM05D008622 ORTHO05D010757 4.7e-07 57.8 28 92.9
SEGI_09210 Sequoiadendron giganteum HOM05D003175 ORTHO05D003591 4.7e-07 57.8 75 40.0
Lalb_Chr07g0180911 Lupinus albus HOM05D003175 ORTHO05D003591 6.2e-07 57.4 78 37.2
Pp3c2_38140 Physcomitrium patens HOM05D003175 ORTHO05D003591 6.2e-07 57.4 81 40.7
Mapoly0011s0195 Marchantia polymorpha HOM05D003175 ORTHO05D003591 8.1e-07 57.0 82 39.0
GSVIVG01015186001 Vitis vinifera HOM05D003175 ORTHO05D003591 8.1e-07 57.0 79 39.2
PSO170G4980 Papaver somniferum HOM05D003175 ORTHO05D003591 1.1e-06 56.6 81 39.5
PSO384G0167 Papaver somniferum HOM05D003175 ORTHO05D003591 1.1e-06 56.6 81 39.5
Sed0010998 Sechium edule HOM05D003175 ORTHO05D003591 1.1e-06 56.6 81 37.0
MBI16_g10338_MAGBIO Magnolia biondii HOM05D003175 ORTHO05D003591 1.4e-06 56.2 79 39.2
Sed0014824 Sechium edule HOM05D003175 ORTHO05D003591 1.4e-06 56.2 81 38.3
TWI09G0130 Tripterygium wilfordii HOM05D003175 ORTHO05D003591 1.4e-06 56.2 81 38.3
COL.COLO4_18186 Corchorus olitorius HOM05D003175 ORTHO05D003591 1.8e-06 55.8 81 38.3
FvH4_1g07750 Fragaria vesca HOM05D003175 ORTHO05D003591 1.8e-06 55.8 79 39.2
FAN19G2985 Fragaria x ananassa HOM05D003175 ORTHO05D003591 1.8e-06 55.8 79 39.2
MD02G1081900 Malus domestica HOM05D003175 ORTHO05D003591 1.8e-06 55.8 79 39.2
Nn7g37004 Nelumbo nucifera HOM05D003175 ORTHO05D003591 1.8e-06 55.8 79 40.5
Prupe.7G207200 Prunus persica HOM05D003175 ORTHO05D003591 1.8e-06 55.8 79 39.2
RcHm_v2.0_Chr2g0093641 Rosa chinensis HOM05D003175 ORTHO05D003591 1.8e-06 55.8 79 39.2
Atru.chr8.2333 Acer truncatum HOM05D003175 ORTHO05D003591 2.4e-06 55.5 81 38.3
Actinidia38453 Actinidia chinensis HOM05D003175 ORTHO05D003591 2.4e-06 55.5 72 41.7
Nitab4.5_0004056g0030 Nicotiana tabacum HOM05D003175 ORTHO05D003591 2.4e-06 55.5 81 38.3
Peaxi162Scf01604g00008 Petunia axillaris HOM05D003175 ORTHO05D003591 2.4e-06 55.5 81 38.3
Pp3c1_7830 Physcomitrium patens HOM05D003175 ORTHO05D003591 2.4e-06 55.5 80 40.0
SMO128G0011 Selaginella moellendorffii HOM05D003175 ORTHO05D003591 2.4e-06 55.5 71 42.3
Solyc07g008660.3 Solanum lycopersicum HOM05D003175 ORTHO05D003591 2.4e-06 55.5 81 38.3
Sopen07g004590 Solanum pennellii HOM05D003175 ORTHO05D003591 2.4e-06 55.5 81 38.3
THA.LOC104804346 Tarenaya hassleriana HOM05D003175 ORTHO05D003591 2.4e-06 55.5 78 38.5
Ciclev10013100m.g Citrus clementina HOM05D003175 ORTHO05D003591 3.1e-06 55.1 79 38.0
FAN26G0002 Fragaria x ananassa HOM05D003175 ORTHO05D003591 3.1e-06 55.1 79 38.0
FAN26G2348 Fragaria x ananassa HOM05D003175 ORTHO05D003591 3.1e-06 55.1 79 38.0
FAN28G0810 Fragaria x ananassa HOM05D003175 ORTHO05D003591 3.1e-06 55.1 79 38.0
MD15G1209200 Malus domestica HOM05D003175 ORTHO05D003591 3.1e-06 55.1 79 38.0
Manes.01G198600 Manihot esculenta HOM05D003175 ORTHO05D003591 3.1e-06 55.1 79 38.0
Nitab4.5_0001519g0020 Nicotiana tabacum HOM05D003175 ORTHO05D003591 3.1e-06 55.1 81 38.3
PSO063G1429 Papaver somniferum HOM05D003175 ORTHO05D003591 3.1e-06 55.1 81 40.7
Phvul.009G231300 Phaseolus vulgaris HOM05D003175 ORTHO05D003591 3.1e-06 55.1 81 37.0
PGR102G2971 Punica granatum HOM05D003175 ORTHO05D003591 3.1e-06 55.1 79 38.0
TAR629G2636 Trochodendron aralioides HOM05D003175 ORTHO05D003591 3.1e-06 55.1 79 39.2
Actinidia29908 Actinidia chinensis HOM05D003175 ORTHO05D003591 4.0e-06 54.7 72 40.3
ATR0626G012 Amborella trichopoda HOM05D003175 ORTHO05D003591 4.0e-06 54.7 79 39.2
Aqoxy3G03231 Aquilegia oxysepala HOM05D003175 ORTHO05D003591 4.0e-06 54.7 81 38.3
ClCG03G015450 Citrullus lanatus HOM05D003175 ORTHO05D003591 4.0e-06 54.7 81 38.3
Lalb_Chr08g0232311 Lupinus albus HOM05D003175 ORTHO05D003591 4.0e-06 54.7 79 38.0
Nitab4.5_0001586g0160 Nicotiana tabacum HOM05D003175 ORTHO05D003591 4.0e-06 54.7 81 38.3
Nitab4.5_0002593g0030 Nicotiana tabacum HOM05D003175 ORTHO05D003591 4.0e-06 54.7 81 38.3
PSO063G6037 Papaver somniferum HOM05D003175 ORTHO05D003591 4.0e-06 54.7 81 39.5
PSO384G0269 Papaver somniferum HOM05D003175 ORTHO05D003591 4.0e-06 54.7 81 38.3
PSO384G5082 Papaver somniferum HOM05D003175 ORTHO05D003591 4.0e-06 54.7 81 38.3
PRCOL_00003143 Prasinoderma coloniale HOM05D003175 ORTHO05D003591 4.0e-06 54.7 72 38.9
QL01p015391 Quercus lobata HOM05D003175 ORTHO05D003591 4.0e-06 54.7 80 38.8
SMO119G0404 Selaginella moellendorffii HOM05D003175 ORTHO05D003591 4.0e-06 54.7 82 37.8
HPP92_004704 Vanilla planifolia HOM05D003175 ORTHO05D003591 4.0e-06 54.7 78 39.7
arahy.Tifrunner.gnm1.ann1.24WPAI Arachis hypogaea HOM05D003175 ORTHO05D003591 5.2e-06 54.3 79 36.7
arahy.Tifrunner.gnm1.ann1.TVN50Z Arachis hypogaea HOM05D003175 ORTHO05D003591 5.2e-06 54.3 79 36.7
Glyma.09G064500 Glycine max HOM05D003175 ORTHO05D003591 5.2e-06 54.3 79 36.7
Glyma.15G170800 Glycine max HOM05D003175 ORTHO05D003591 5.2e-06 54.3 79 36.7
HanXRQChr10g0319441 Helianthus annuus HOM05D003175 ORTHO05D003591 5.2e-06 54.3 79 36.7
Medtr2g039750 Medicago truncatula HOM05D003175 ORTHO05D003591 5.2e-06 54.3 79 35.4
QL02p062322 Quercus lobata HOM05D003175 ORTHO05D003591 5.2e-06 54.3 79 36.7
SGA_v2.0_scaffold40G15473 Striga asiatica HOM05D003175 ORTHO05D003591 5.2e-06 54.3 79 36.7
TPR.G13431 Trifolium pratense HOM05D003175 ORTHO05D003591 5.2e-06 54.3 79 35.4
Aqoxy7G02783 Aquilegia oxysepala HOM05D003175 ORTHO05D003591 6.9e-06 53.9 81 38.3
CiPaw.08G005200 Carya illinoinensis HOM05D003175 ORTHO05D003591 6.9e-06 53.9 75 38.7
AUR62003470 Chenopodium quinoa HOM05D003175 ORTHO05D003591 6.9e-06 53.9 77 35.1
CsaV3_1G040590 Cucumis sativus L. HOM05D003175 ORTHO05D003591 6.9e-06 53.9 75 38.7
FAN23G2612 Fragaria x ananassa HOM05D003175 ORTHO05D003591 6.9e-06 53.9 79 36.7
TWI53G2020 Tripterygium wilfordii HOM05D003175 ORTHO05D003591 6.9e-06 53.9 78 35.9
VMungo0251G0584 Vigna mungo HOM05D003175 ORTHO05D003591 6.9e-06 53.9 81 35.8
ECA234G4558 Erigeron canadensis HOM05D003175 ORTHO05D003591 9.0e-06 53.5 79 36.7
Migut.J00455 Erythranthe guttata HOM05D003175 ORTHO05D003591 9.0e-06 53.5 79 35.4
Eucgr.C03471 Eucalyptus grandis HOM05D003175 ORTHO05D003591 9.0e-06 53.5 79 38.0
Eucgr.C03473 Eucalyptus grandis HOM05D003175 ORTHO05D003591 9.0e-06 53.5 79 38.0
Gohir.A10G064800 Gossypium hirsutum HOM05D003175 ORTHO05D003591 9.0e-06 53.5 81 37.0
Gohir.D05G031900 Gossypium hirsutum HOM05D003175 ORTHO05D003591 9.0e-06 53.5 81 37.0
Gohir.D10G066300 Gossypium hirsutum HOM05D003175 ORTHO05D003591 9.0e-06 53.5 81 37.0
Gorai.009G032100 Gossypium raimondii HOM05D003175 ORTHO05D003591 9.0e-06 53.5 81 37.0
Gorai.011G070400 Gossypium raimondii HOM05D003175 ORTHO05D003591 9.0e-06 53.5 81 37.0
Lj6g0021196 Lotus japonicus HOM05D003175 ORTHO05D003591 9.0e-06 53.5 79 38.0
Potri.004G217400 Populus trichocarpa HOM05D003175 ORTHO05D003591 9.0e-06 53.5 81 37.0


User provided reference genes

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