Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0026560g0010 Nicotiana tabacum HOM05D002880 ORTHO05D003450 0.0e+00 1104.0 553 100.0
Nitab4.5_0003382g0060 Nicotiana tabacum HOM05D002880 ORTHO05D003450 0.0e+00 1083.6 551 98.7
Peaxi162Scf00083g00425 Petunia axillaris HOM05D002880 ORTHO05D003450 2.3e-307 1058.1 551 96.4
CAN.G1671.13 Capsicum annuum HOM05D002880 ORTHO05D003450 6.8e-304 1046.6 551 94.9
Sopen02g028690 Solanum pennellii HOM05D002880 ORTHO05D003450 9.9e-303 1042.7 551 94.4
Solyc02g083900.3 Solanum lycopersicum HOM05D002880 ORTHO05D003450 4.9e-302 1040.4 551 94.2
Dinv40086 Davidia involucrata HOM05D002880 ORTHO05D003450 1.3e-283 979.2 547 88.8
SalBow3G1624 Salvia bowleyana HOM05D002880 ORTHO05D003450 2.5e-282 974.9 547 87.6
Lj2C468G7 Lonicera japonica HOM05D002880 ORTHO05D003450 6.2e-281 970.3 546 87.0
Actinidia17445 Actinidia chinensis HOM05D002880 ORTHO05D003450 9.9e-279 963.0 547 86.7
Migut.H01155 Erythranthe guttata HOM05D002880 ORTHO05D003450 1.6e-276 955.7 548 86.3
CiPaw.07G058400 Carya illinoinensis HOM05D002880 ORTHO05D003450 6.7e-275 950.3 551 84.4
GSVIVG01018783001 Vitis vinifera HOM05D002880 ORTHO05D003450 1.9e-274 948.7 546 85.0
CSS0040827 Camellia sinensis var. sinensis HOM05D002880 ORTHO05D003450 2.5e-274 948.3 547 84.5
Cc07_g10710 Coffea canephora HOM05D002880 ORTHO05D003450 3.3e-274 948.0 547 85.2
Cfa006971 Carpinus fangiana HOM05D002880 ORTHO05D003450 4.3e-274 947.6 551 84.4
CSS0038464 Camellia sinensis var. sinensis HOM05D002880 ORTHO05D003450 5.6e-274 947.2 547 84.3
Thecc.01G019100 Theobroma cacao HOM05D002880 ORTHO05D003450 5.6e-274 947.2 551 84.4
COL.COLO4_21911 Corchorus olitorius HOM05D002880 ORTHO05D003450 1.6e-273 945.7 547 84.5
SGA_v2.0_scaffold78G25389 Striga asiatica HOM05D002880 ORTHO05D003450 2.8e-273 944.9 548 85.4
Duzib147G0886 Durio zibethinus HOM05D002880 ORTHO05D003450 1.1e-272 943.0 551 83.7
QL06p032741 Quercus lobata HOM05D002880 ORTHO05D003450 1.4e-272 942.6 546 84.1
Gohir.A11G175500 Gossypium hirsutum HOM05D002880 ORTHO05D003450 1.8e-272 942.2 547 83.7
Duzib187G1438 Durio zibethinus HOM05D002880 ORTHO05D003450 2.4e-272 941.8 547 84.1
Gohir.D11G183100 Gossypium hirsutum HOM05D002880 ORTHO05D003450 6.9e-272 940.3 547 83.4
ClCG01G020300 Citrullus lanatus HOM05D002880 ORTHO05D003450 9.0e-272 939.9 551 83.5
Sed0017656 Sechium edule HOM05D002880 ORTHO05D003450 1.5e-271 939.1 551 82.8
CsaV3_6G047090 Cucumis sativus L. HOM05D002880 ORTHO05D003450 5.8e-271 937.2 551 83.3
MELO3C007903.2 Cucumis melo HOM05D002880 ORTHO05D003450 2.9e-270 934.9 551 83.1
DCAR_025997 Daucus carota HOM05D002880 ORTHO05D003450 6.4e-270 933.7 547 83.5
Manes.01G145600 Manihot esculenta HOM05D002880 ORTHO05D003450 8.4e-270 933.3 551 83.8
Gorai.007G195100 Gossypium raimondii HOM05D002880 ORTHO05D003450 1.4e-269 932.6 547 82.8
Ciclev10024677m.g Citrus clementina HOM05D002880 ORTHO05D003450 4.2e-269 931.0 551 82.8
Potri.005G114300 Populus trichocarpa HOM05D002880 ORTHO05D003450 4.2e-269 931.0 551 83.8
MSTRG.2713 Avicennia marina HOM05D002880 ORTHO05D003450 5.5e-269 930.6 547 82.6
Gorai.003G009700 Gossypium raimondii HOM05D002880 ORTHO05D003450 5.5e-269 930.6 551 83.3
Gohir.D03G009500 Gossypium hirsutum HOM05D002880 ORTHO05D003450 7.1e-269 930.2 551 83.1
TPR.G18181 Trifolium pratense HOM05D002880 ORTHO05D003450 7.1e-269 930.2 551 82.6
vmacro21922 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 2.1e-268 928.7 547 82.8
vmacro23248 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 2.1e-268 928.7 547 82.8
Atru.chr1.3786 Acer truncatum HOM05D002880 ORTHO05D003450 6.0e-268 927.2 546 83.0
Rhsim10G0212300 Rhododendron simsii HOM05D002880 ORTHO05D003450 6.0e-268 927.2 547 83.2
RcHm_v2.0_Chr2g0099461 Rosa chinensis HOM05D002880 ORTHO05D003450 1.0e-267 926.4 550 83.6
Sed0027366 Sechium edule HOM05D002880 ORTHO05D003450 2.3e-267 925.2 551 82.0
Ca_25825_v3 Cicer arietinum L. HOM05D002880 ORTHO05D003450 3.9e-267 924.5 551 82.8
Psat2g154720 Pisum sativum HOM05D002880 ORTHO05D003450 1.1e-266 922.9 551 81.7
Gohir.A02G170600 Gossypium hirsutum HOM05D002880 ORTHO05D003450 1.5e-266 922.5 551 82.8
Lsat_1_v5_gn_2_75940 Lactuca sativa HOM05D002880 ORTHO05D003450 2.5e-266 921.8 548 83.4
Haze_03765 Corylus avellana HOM05D002880 ORTHO05D003450 1.3e-265 919.5 551 82.2
Potri.007G057900 Populus trichocarpa HOM05D002880 ORTHO05D003450 1.3e-265 919.5 551 82.8
TWI09G0522 Tripterygium wilfordii HOM05D002880 ORTHO05D003450 1.3e-265 919.5 553 81.9
Lalb_Chr16g0377511 Lupinus albus HOM05D002880 ORTHO05D003450 2.1e-265 918.7 547 82.6
PGR119G1290 Punica granatum HOM05D002880 ORTHO05D003450 2.8e-265 918.3 551 82.9
Medtr5g022000 Medicago truncatula HOM05D002880 ORTHO05D003450 3.7e-265 917.9 551 82.0
arahy.Tifrunner.gnm1.ann1.E76U4D Arachis hypogaea HOM05D002880 ORTHO05D003450 6.2e-265 917.1 551 81.3
Phvul.002G108900 Phaseolus vulgaris HOM05D002880 ORTHO05D003450 1.4e-264 916.0 547 82.4
Glyma.01G166400 Glycine max HOM05D002880 ORTHO05D003450 2.4e-264 915.2 551 81.9
arahy.Tifrunner.gnm1.ann1.FN5NT6 Arachis hypogaea HOM05D002880 ORTHO05D003450 3.1e-264 914.8 551 81.3
Oeu005318.1 Olea europaea HOM05D002880 ORTHO05D003450 3.1e-264 914.8 547 81.7
ECA238G3174 Erigeron canadensis HOM05D002880 ORTHO05D003450 5.3e-264 914.1 551 82.4
Glyma.11G077000 Glycine max HOM05D002880 ORTHO05D003450 1.2e-263 912.9 547 82.1
TAR625G0893 Trochodendron aralioides HOM05D002880 ORTHO05D003450 2.6e-263 911.8 547 81.5
Sabra05G0093500 Salix brachista HOM05D002880 ORTHO05D003450 3.4e-263 911.4 581 79.5
FAN23G1788 Fragaria x ananassa HOM05D002880 ORTHO05D003450 1.3e-262 909.4 550 82.2
Lj2g0011330 Lotus japonicus HOM05D002880 ORTHO05D003450 2.9e-262 908.3 553 80.3
FAN28G1007 Fragaria x ananassa HOM05D002880 ORTHO05D003450 6.5e-262 907.1 550 82.0
Lalb_Chr09g0321741 Lupinus albus HOM05D002880 ORTHO05D003450 6.5e-262 907.1 547 81.9
HanXRQChr14g0441401 Helianthus annuus HOM05D002880 ORTHO05D003450 1.4e-261 906.0 548 82.3
Prupe.7G168000 Prunus persica HOM05D002880 ORTHO05D003450 1.9e-261 905.6 575 79.1
Eucgr.I02351 Eucalyptus grandis HOM05D002880 ORTHO05D003450 4.2e-261 904.4 553 80.5
FAN26G2624 Fragaria x ananassa HOM05D002880 ORTHO05D003450 9.3e-261 903.3 551 81.9
CANSAT01G1381 Cannabis sativa HOM05D002880 ORTHO05D003450 1.6e-260 902.5 551 80.0
FvH4_1g11860 Fragaria vesca HOM05D002880 ORTHO05D003450 4.6e-260 901.0 550 81.3
FAN19G0100 Fragaria x ananassa HOM05D002880 ORTHO05D003450 4.6e-260 901.0 550 81.1
HanXRQChr13g0414661 Helianthus annuus HOM05D002880 ORTHO05D003450 6.7e-259 897.1 548 81.8
MD15G1245900 Malus domestica HOM05D002880 ORTHO05D003450 1.1e-258 896.3 551 80.6
MD02G1132600 Malus domestica HOM05D002880 ORTHO05D003450 4.3e-258 894.4 547 80.4
Sabra07G0049600 Salix brachista HOM05D002880 ORTHO05D003450 7.4e-258 893.6 551 80.9
Nn5g30154 Nelumbo nucifera HOM05D002880 ORTHO05D003450 1.3e-257 892.9 551 79.7
Aqoxy5G01784 Aquilegia oxysepala HOM05D002880 ORTHO05D003450 2.2e-257 892.1 551 79.3
Hund16489 Selenicereus undatus HOM05D002880 ORTHO05D003450 6.3e-257 890.6 547 80.3
AUR62029462 Chenopodium quinoa HOM05D002880 ORTHO05D003450 5.3e-256 887.5 547 79.7
Sc07g0000970 Simmondsia chinensis HOM05D002880 ORTHO05D003450 1.7e-254 882.5 547 79.3
MBI14_g08214_MAGBIO Magnolia biondii HOM05D002880 ORTHO05D003450 3.8e-254 881.3 547 79.2
AUR62003370 Chenopodium quinoa HOM05D002880 ORTHO05D003450 1.6e-252 875.9 547 79.0
EL10Ac6g15479 Beta vulgaris HOM05D002880 ORTHO05D003450 1.8e-251 872.5 547 78.1
Sp3g31350 Schrenkiella parvula HOM05D002880 ORTHO05D003450 1.3e-249 866.3 547 78.6
Carub.0003s3206 Capsella rubella HOM05D002880 ORTHO05D003450 1.7e-249 865.9 547 79.3
THA.LOC104804262 Tarenaya hassleriana HOM05D002880 ORTHO05D003450 6.3e-249 864.0 547 77.9
Aa31LG8G15100 Aethionema arabicum HOM05D002880 ORTHO05D003450 1.4e-248 862.8 547 78.4
unitig_0.g3 Utricularia gibba HOM05D002880 ORTHO05D003450 3.1e-248 861.7 545 78.2
A06p33500 Brassica napus HOM05D002880 ORTHO05D003450 9.1e-248 860.1 547 78.2
BraA06t26284Z Brassica rapa HOM05D002880 ORTHO05D003450 9.1e-248 860.1 547 78.2
BolC3t18143H Brassica oleracea HOM05D002880 ORTHO05D003450 1.5e-247 859.4 547 78.2
AL3G50950 Arabidopsis lyrata HOM05D002880 ORTHO05D003450 7.7e-247 857.1 547 78.6
BcaB08g34776 Brassica carinata HOM05D002880 ORTHO05D003450 7.7e-247 857.1 547 78.1
AT2G17930 Arabidopsis thaliana HOM05D002880 ORTHO05D003450 1.0e-246 856.7 547 78.6
BcaC01g02877 Brassica carinata HOM05D002880 ORTHO05D003450 1.0e-246 856.7 547 77.9
C03p58840 Brassica napus HOM05D002880 ORTHO05D003450 1.0e-246 856.7 547 77.9
BcaC04g22939 Brassica carinata HOM05D002880 ORTHO05D003450 1.3e-246 856.3 547 77.9
C09p13660 Brassica napus HOM05D002880 ORTHO05D003450 1.3e-246 856.3 547 77.9
BolC9t54256H Brassica oleracea HOM05D002880 ORTHO05D003450 1.3e-246 856.3 547 77.9
Thhalv10022516m.g Eutrema salsugineum HOM05D002880 ORTHO05D003450 1.3e-246 856.3 547 77.9
THA.LOC104819750 Tarenaya hassleriana HOM05D002880 ORTHO05D003450 1.3e-246 856.3 550 76.4
CARHR108410 Cardamine hirsuta HOM05D002880 ORTHO05D003450 2.2e-246 855.5 547 78.1
BcaB07g31700 Brassica carinata HOM05D002880 ORTHO05D003450 6.5e-246 854.0 547 77.7
A09p11620 Brassica napus HOM05D002880 ORTHO05D003450 8.5e-246 853.6 547 77.7
BraA09t36808Z Brassica rapa HOM05D002880 ORTHO05D003450 1.4e-245 852.8 547 77.5
PSO541G3550 Papaver somniferum HOM05D002880 ORTHO05D003450 2.1e-244 849.0 550 77.1
PSO675G2090 Papaver somniferum HOM05D002880 ORTHO05D003450 3.6e-244 848.2 551 77.0
ATR0630G002 Amborella trichopoda HOM05D002880 ORTHO05D003450 1.5e-242 842.8 547 74.8
Thhalv10024177m.g Eutrema salsugineum HOM05D002880 ORTHO05D003450 1.5e-242 842.8 547 76.6
AL7G14960 Arabidopsis lyrata HOM05D002880 ORTHO05D003450 2.2e-241 839.0 547 76.2
Carub.0007s0415 Capsella rubella HOM05D002880 ORTHO05D003450 1.4e-240 836.3 549 75.8
CARHR244480 Cardamine hirsuta HOM05D002880 ORTHO05D003450 1.2e-239 833.2 546 75.5
Aa31LG6G13030 Aethionema arabicum HOM05D002880 ORTHO05D003450 5.0e-238 827.8 547 76.1
HPP92_000393 Vanilla planifolia HOM05D002880 ORTHO05D003450 1.4e-237 826.2 549 74.7
vmacro23472 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 2.1e-236 822.4 547 75.5
Lj6g0023005 Lotus japonicus HOM05D002880 ORTHO05D003450 3.9e-235 818.1 549 75.6
AT4G36080 Arabidopsis thaliana HOM05D002880 ORTHO05D003450 7.4e-234 813.9 532 75.8
A01p02660 Brassica napus HOM05D002880 ORTHO05D003450 3.5e-231 805.1 547 73.7
C01p02960 Brassica napus HOM05D002880 ORTHO05D003450 1.0e-230 803.5 547 72.9
BolC1t00282H Brassica oleracea HOM05D002880 ORTHO05D003450 1.0e-230 803.5 547 72.9
Sp7g33860 Schrenkiella parvula HOM05D002880 ORTHO05D003450 1.7e-230 802.7 550 73.1
BraA01t00252Z Brassica rapa HOM05D002880 ORTHO05D003450 6.5e-230 800.8 547 73.1
SHI08552 Sapria himalayana HOM05D002880 ORTHO05D003450 8.8e-227 790.4 547 70.9
BcaNung00767 Brassica carinata HOM05D002880 ORTHO05D003450 1.2e-220 770.0 547 70.6
Zm00001eb329250 Zea mays HOM05D002880 ORTHO05D003450 1.5e-218 763.1 551 68.8
HPP92_000450 Vanilla planifolia HOM05D002880 ORTHO05D003450 2.8e-212 742.3 547 68.9
Mapoly0010s0094 Marchantia polymorpha HOM05D002880 ORTHO05D003450 2.9e-206 722.2 548 64.1
Pp3c17_20000 Physcomitrium patens HOM05D002880 ORTHO05D003450 3.3e-205 718.8 545 64.8
AagrBONN_evm.TU.Sc2ySwM_368.861 Anthoceros agrestis HOM05D002880 ORTHO05D003450 1.0e-203 713.8 547 63.8
SMO147G0347 Selaginella moellendorffii HOM05D002880 ORTHO05D003450 3.1e-203 712.2 547 65.4
CBR_g31691 Chara braunii HOM05D002880 ORTHO05D003450 4.3e-173 612.1 562 56.4
MCO16G028 Micromonas commoda HOM05D002880 ORTHO05D003450 1.5e-130 470.7 530 45.8
PRCOL_00005144 Prasinoderma coloniale HOM05D002880 ORTHO05D003450 1.5e-112 411.0 628 37.9
Cre02.g088750 Chlamydomonas reinhardtii HOM05D002880 ORTHO05D003450 3.6e-87 326.6 837 29.2
Cfa023980 Carpinus fangiana HOM05D002880 ORTHO05D003450 1.5e-69 268.1 530 33.0
COL.COLO4_21944 Corchorus olitorius HOM05D002880 ORTHO05D030896 1.9e-48 198.0 146 65.1
Atru.chr1.4015 Acer truncatum HOM05D002880 ORTHO05D003450 8.1e-39 166.0 95 76.8
Actinidia17496 Actinidia chinensis HOM05D002880 ORTHO05D030896 1.8e-17 95.1 144 42.4
Medtr5g038110 Medicago truncatula HOM05D002880 ORTHO05D038078 1.2e-13 82.4 108 44.4
Actinidia11221 Actinidia chinensis HOM05D002880 ORTHO05D038078 7.7e-13 79.7 46 84.8
Atru.chr1.4016 Acer truncatum HOM05D002880 ORTHO05D052144 2.2e-12 78.2 49 79.6
Actinidia17492 Actinidia chinensis HOM05D002880 ORTHO05D030896 6.5e-12 76.6 49 71.4
Actinidia22979 Actinidia chinensis HOM05D002880 ORTHO05D054390 3.6e-10 70.9 75 56.0
GSVIVG01036190001 Vitis vinifera HOM05D006685 ORTHO05D008244 3.7e-07 60.8 42 73.8


User provided reference genes

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