Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0022667g0010 Nicotiana tabacum HOM05D002292 ORTHO05D014741 4.3e-26 120.9 79 100.0
Nitab4.5_0000621g0140 Nicotiana tabacum HOM05D002292 ORTHO05D003256 3.6e-25 117.9 79 97.5
Peaxi162Scf00845g00118 Petunia axillaris HOM05D002292 ORTHO05D003256 5.8e-23 110.5 79 93.7
Nitab4.5_0002773g0020 Nicotiana tabacum HOM05D002292 ORTHO05D003256 6.0e-20 100.5 79 87.3
Nitab4.5_0006815g0020 Nicotiana tabacum HOM05D002292 ORTHO05D003256 6.0e-20 100.5 79 87.3
PGSC0003DMG400021858 Solanum tuberosum HOM05D002292 ORTHO05D012147 3.0e-19 98.2 79 68.4
CAN.G209.5 Capsicum annuum HOM05D002292 ORTHO05D003256 5.1e-19 97.4 79 89.9
Sopen10g004040 Solanum pennellii HOM05D002292 ORTHO05D003256 1.9e-18 95.5 79 67.1
CAN.G782.27 Capsicum annuum HOM05D002292 ORTHO05D003256 2.5e-18 95.1 79 83.5
Solyc07g053650.4 Solanum lycopersicum HOM05D002292 ORTHO05D003256 2.5e-18 95.1 79 87.3
Sopen07g027620 Solanum pennellii HOM05D002292 ORTHO05D003256 2.5e-18 95.1 79 87.3
PGSC0003DMG402009395 Solanum tuberosum HOM05D002292 ORTHO05D003256 3.6e-17 91.3 79 84.8
Peaxi162Scf00059g00918 Petunia axillaris HOM05D002292 ORTHO05D003256 1.3e-14 82.8 80 80.0
TWI14G1271 Tripterygium wilfordii HOM05D002292 ORTHO05D003256 1.3e-14 82.8 75 84.0
Dinv01517 Davidia involucrata HOM05D002292 ORTHO05D003256 2.2e-14 82.0 75 81.3
Dinv10166 Davidia involucrata HOM05D002292 ORTHO05D003256 2.2e-14 82.0 75 81.3
Sed0014471 Sechium edule HOM05D002292 ORTHO05D003256 2.2e-14 82.0 74 81.1
ClCG02G002360 Citrullus lanatus HOM05D002292 ORTHO05D003256 3.8e-14 81.3 74 79.7
Sed0000760 Sechium edule HOM05D002292 ORTHO05D003256 3.8e-14 81.3 74 74.3
Rhsim06G0137300 Rhododendron simsii HOM05D002292 ORTHO05D003256 4.9e-14 80.9 75 72.0
Manes.12G089500 Manihot esculenta HOM05D002292 ORTHO05D003256 6.4e-14 80.5 75 80.0
MELO3C018868.2 Cucumis melo HOM05D002292 ORTHO05D003256 8.4e-14 80.1 74 78.4
CsaV3_7G003090 Cucumis sativus L. HOM05D002292 ORTHO05D003256 8.4e-14 80.1 74 73.0
Actinidia30455 Actinidia chinensis HOM05D002292 ORTHO05D014741 1.4e-13 79.3 74 74.3
Ciclev10014210m.g Citrus clementina HOM05D002292 ORTHO05D003256 1.9e-13 79.0 75 77.3
Hund01060 Selenicereus undatus HOM05D002292 ORTHO05D003256 2.4e-13 78.6 75 73.3
Oeu036078.1 Olea europaea HOM05D002292 ORTHO05D003256 3.2e-13 78.2 79 68.4
GSVIVG01020602001 Vitis vinifera HOM05D002292 ORTHO05D003256 3.2e-13 78.2 75 77.3
Atru.chr6.2873 Acer truncatum HOM05D002292 ORTHO05D003256 7.1e-13 77.0 75 76.0
Actinidia39328 Actinidia chinensis HOM05D002292 ORTHO05D003256 7.1e-13 77.0 75 70.7
Cpa.g.c26338 Carica papaya HOM05D002292 ORTHO05D003256 1.2e-12 76.3 75 78.7
Sc21g0003680 Simmondsia chinensis HOM05D002292 ORTHO05D003256 1.2e-12 76.3 63 87.3
EL10Ac9g20812 Beta vulgaris HOM05D002292 ORTHO05D003256 1.6e-12 75.9 75 76.0
AL3G53630 Arabidopsis lyrata HOM05D002292 ORTHO05D003256 2.7e-12 75.1 79 72.2
CANSAT64G2461 Cannabis sativa HOM05D002292 ORTHO05D003256 3.5e-12 74.7 75 61.3
CARHR111150 Cardamine hirsuta HOM05D002292 ORTHO05D003256 3.5e-12 74.7 79 74.7
Migut.M00151 Erythranthe guttata HOM05D002292 ORTHO05D003256 4.6e-12 74.3 65 81.5
Lsat_1_v5_gn_6_65161 Lactuca sativa HOM05D002292 ORTHO05D003256 4.6e-12 74.3 75 76.0
Lj8C108T4 Lonicera japonica HOM05D002292 ORTHO05D003256 4.6e-12 74.3 75 76.0
SGA_v2.0_scaffold70G23495 Striga asiatica HOM05D002292 ORTHO05D003256 4.6e-12 74.3 74 75.7
Eucgr.K01053 Eucalyptus grandis HOM05D002292 ORTHO05D003256 6.0e-12 73.9 75 68.0
Thhalv10001903m.g Eutrema salsugineum HOM05D002292 ORTHO05D003256 6.0e-12 73.9 79 73.4
PGR142G0833 Punica granatum HOM05D002292 ORTHO05D003256 1.8e-11 72.4 75 68.0
Carub.0003s3506 Capsella rubella HOM05D002292 ORTHO05D003256 2.3e-11 72.0 79 73.4
Carub.0007s1223 Capsella rubella HOM05D002292 ORTHO05D003256 2.3e-11 72.0 79 73.4
AUR62038984 Chenopodium quinoa HOM05D002292 ORTHO05D003256 2.3e-11 72.0 75 73.3
AT2G20580 Arabidopsis thaliana HOM05D002292 ORTHO05D003256 3.0e-11 71.6 79 69.6
MSTRG.15130 Avicennia marina HOM05D002292 ORTHO05D003256 3.0e-11 71.6 74 68.9
BcaC06g36750 Brassica carinata HOM05D002292 ORTHO05D003256 3.0e-11 71.6 79 70.9
BolC7t40489H Brassica oleracea HOM05D002292 ORTHO05D003256 3.0e-11 71.6 79 70.9
AUR62036052 Chenopodium quinoa HOM05D002292 ORTHO05D003256 3.9e-11 71.2 75 73.3
Cc05_g07700 Coffea canephora HOM05D002292 ORTHO05D003256 3.9e-11 71.2 79 74.7
Nn1g00672 Nelumbo nucifera HOM05D002292 ORTHO05D003256 3.9e-11 71.2 60 75.0
BolC7t43283H Brassica oleracea HOM05D002292 ORTHO05D012147 5.1e-11 70.9 79 70.9
CSS0001743 Camellia sinensis var. sinensis HOM05D002292 ORTHO05D003256 5.1e-11 70.9 75 77.3
Sp7g26440 Schrenkiella parvula HOM05D002292 ORTHO05D003256 5.1e-11 70.9 79 73.4
A03p58120 Brassica napus HOM05D002292 ORTHO05D003256 6.7e-11 70.5 79 70.9
BraA03t14878Z Brassica rapa HOM05D002292 ORTHO05D003256 6.7e-11 70.5 79 70.9
SGA_v2.0_scaffold34G13924 Striga asiatica HOM05D002292 ORTHO05D003256 6.7e-11 70.5 73 71.2
BcaNung01564 Brassica carinata HOM05D002292 ORTHO05D003256 8.7e-11 70.1 79 72.2
C01p11030 Brassica napus HOM05D002292 ORTHO05D003256 8.7e-11 70.1 79 72.2
BolC1t01065H Brassica oleracea HOM05D002292 ORTHO05D003256 8.7e-11 70.1 79 72.2
ATR0706G164 Amborella trichopoda HOM05D002292 ORTHO05D012147 1.1e-10 69.7 76 65.8
C07p00430 Brassica napus HOM05D002292 ORTHO05D003256 1.1e-10 69.7 79 69.6
BcaC09g51648 Brassica carinata HOM05D002292 ORTHO05D003256 1.5e-10 69.3 79 72.2
SalBow7G1304 Salvia bowleyana HOM05D002292 ORTHO05D003256 1.5e-10 69.3 74 74.3
THA.LOC104804050 Tarenaya hassleriana HOM05D002292 ORTHO05D003256 1.5e-10 69.3 79 68.4
AT4G28470 Arabidopsis thaliana HOM05D002292 ORTHO05D003256 1.9e-10 68.9 79 70.9
C07p27520 Brassica napus HOM05D002292 ORTHO05D012147 1.9e-10 68.9 79 69.6
TAR369G0508 Trochodendron aralioides HOM05D002292 ORTHO05D003256 1.9e-10 68.9 60 78.3
ATR0691G112 Amborella trichopoda HOM05D002292 ORTHO05D003256 2.5e-10 68.6 57 77.2
BcaC06g32618 Brassica carinata HOM05D002292 ORTHO05D003256 2.5e-10 68.6 79 69.6
BolC3t16989H Brassica oleracea HOM05D002292 ORTHO05D012147 2.5e-10 68.6 79 69.6
Oeu016909.1 Olea europaea HOM05D002292 ORTHO05D003256 2.5e-10 68.6 79 60.8
TWI23G0418 Tripterygium wilfordii HOM05D002292 ORTHO05D003256 2.5e-10 68.6 75 76.0
AL7G24090 Arabidopsis lyrata HOM05D002292 ORTHO05D003256 3.3e-10 68.2 79 72.2
C08p27130 Brassica napus HOM05D001899 ORTHO05D001858 3.3e-10 68.2 79 69.6
BraA03t11347Z Brassica rapa HOM05D001899 ORTHO05D014741 3.3e-10 68.2 79 69.6
BraA06t25633Z Brassica rapa HOM05D002292 ORTHO05D014741 3.3e-10 68.2 79 69.6
Thhalv10024363m.g Eutrema salsugineum HOM05D002292 ORTHO05D003256 3.3e-10 68.2 79 69.6
MBI04_g03345_MAGBIO Magnolia biondii HOM05D002292 ORTHO05D003256 3.3e-10 68.2 79 55.7
BraA07t27810Z Brassica rapa HOM05D002292 ORTHO05D003256 4.3e-10 67.8 79 67.1
Sp3g33820 Schrenkiella parvula HOM05D002292 ORTHO05D003256 4.3e-10 67.8 80 62.5
A07p00160 Brassica napus HOM05D002292 ORTHO05D003256 5.6e-10 67.4 79 65.8
A01p09480 Brassica napus HOM05D002292 ORTHO05D003256 7.4e-10 67.0 79 70.9
BraA01t00890Z Brassica rapa HOM05D002292 ORTHO05D003256 7.4e-10 67.0 79 70.9
Manes.13G142400 Manihot esculenta HOM05D002292 ORTHO05D003256 7.4e-10 67.0 67 59.7
BcaB03g16854 Brassica carinata HOM05D002292 ORTHO05D003256 9.6e-10 66.6 79 67.1
C07p56240 Brassica napus HOM05D002292 ORTHO05D003256 9.6e-10 66.6 79 68.4
Nn6g33691 Nelumbo nucifera HOM05D002292 ORTHO05D003256 9.6e-10 66.6 80 51.2
A02p21350 Brassica napus HOM05D001899 ORTHO05D001858 1.3e-09 66.2 79 68.4
MD09G1242100 Malus domestica HOM05D002292 ORTHO05D003256 1.3e-09 66.2 74 67.6
A06p20880 Brassica napus HOM05D002292 ORTHO05D014741 1.6e-09 65.9 79 68.4
C05p41580 Brassica napus HOM05D002292 ORTHO05D012147 1.6e-09 65.9 79 67.1
BolC7t46102H Brassica oleracea HOM05D002292 ORTHO05D003256 1.6e-09 65.9 79 67.1
BcaC06g34529 Brassica carinata HOM05D002292 ORTHO05D012147 2.1e-09 65.5 79 68.4
CARHR236240 Cardamine hirsuta HOM05D002292 ORTHO05D003256 2.1e-09 65.5 79 69.6
MD17G1234500 Malus domestica HOM05D002292 ORTHO05D003256 2.1e-09 65.5 74 68.9
Aqoxy3G02563 Aquilegia oxysepala HOM05D002292 ORTHO05D003256 2.8e-09 65.1 80 56.2
C08p23100 Brassica napus HOM05D001899 ORTHO05D001858 2.8e-09 65.1 79 68.4
BcaNung05132 Brassica carinata HOM05D001899 ORTHO05D001858 3.7e-09 64.7 79 68.4
SGA_v2.0_scaffold71G23868 Striga asiatica HOM05D002292 ORTHO05D014741 3.7e-09 64.7 71 71.8
Duzib248G0284 Durio zibethinus HOM05D002292 ORTHO05D003256 4.8e-09 64.3 60 81.7
PSO339G0848 Papaver somniferum HOM05D002292 ORTHO05D003256 8.1e-09 63.5 57 71.9
PSO384G0954 Papaver somniferum HOM05D002292 ORTHO05D003256 8.1e-09 63.5 57 71.9
DCAR_009754 Daucus carota HOM05D002292 ORTHO05D003256 1.1e-08 63.2 75 69.3
SHI10490 Sapria himalayana HOM05D002292 ORTHO05D014741 1.1e-08 63.2 74 55.4
Thecc.02G185600 Theobroma cacao HOM05D002292 ORTHO05D003256 1.1e-08 63.2 60 80.0
Cfa023332 Carpinus fangiana HOM05D002292 ORTHO05D003256 1.4e-08 62.8 77 55.8
A02p31100 Brassica napus HOM05D002292 ORTHO05D012147 1.8e-08 62.4 79 67.1
TPR.G9354 Trifolium pratense HOM05D002292 ORTHO05D003256 2.4e-08 62.0 75 53.3
Ah.01g015420 Amaranthus hybridus HOM05D002292 ORTHO05D003256 3.1e-08 61.6 53 88.7
C06p15720 Brassica napus HOM05D001899 ORTHO05D001858 3.1e-08 61.6 79 65.8
CiPaw.03G181100 Carya illinoinensis HOM05D002292 ORTHO05D003256 3.1e-08 61.6 76 57.9
THA.LOC104824690 Tarenaya hassleriana HOM05D002292 ORTHO05D003256 3.1e-08 61.6 79 49.4
Haze_13365 Corylus avellana HOM05D002292 ORTHO05D003256 4.0e-08 61.2 76 61.8
HanXRQChr11g0326301 Helianthus annuus HOM05D002292 ORTHO05D003256 4.0e-08 61.2 74 63.5
HanXRQChr17g0541921 Helianthus annuus HOM05D002292 ORTHO05D003256 5.3e-08 60.8 75 66.7
arahy.Tifrunner.gnm1.ann1.ULM3VA Arachis hypogaea HOM05D002292 ORTHO05D003256 9.0e-08 60.1 78 50.0
arahy.Tifrunner.gnm1.ann1.WEN01S Arachis hypogaea HOM05D002292 ORTHO05D003256 9.0e-08 60.1 78 50.0
Medtr4g078780 Medicago truncatula HOM05D002292 ORTHO05D003256 9.0e-08 60.1 75 52.0
RcHm_v2.0_Chr2g0127201 Rosa chinensis HOM05D002292 ORTHO05D003256 9.0e-08 60.1 74 71.6
FAN02G3233 Fragaria x ananassa HOM05D002292 ORTHO05D003256 1.2e-07 59.7 74 73.0
Gohir.A01G019500 Gossypium hirsutum HOM05D002292 ORTHO05D003256 1.2e-07 59.7 52 86.5
Gorai.002G020200 Gossypium raimondii HOM05D002292 ORTHO05D003256 1.2e-07 59.7 52 86.5
CiPaw.04G128800 Carya illinoinensis HOM05D002292 ORTHO05D003256 1.5e-07 59.3 76 67.1
FvH4_6g26640 Fragaria vesca HOM05D002292 ORTHO05D003256 2.6e-07 58.5 74 73.0
FAN09G0797 Fragaria x ananassa HOM05D002292 ORTHO05D003256 2.6e-07 58.5 74 73.0
FAN14G5439 Fragaria x ananassa HOM05D002292 ORTHO05D003256 2.6e-07 58.5 74 73.0
Gohir.D01G018000 Gossypium hirsutum HOM05D002292 ORTHO05D003256 4.5e-07 57.8 52 76.9
Lalb_Chr03g0029631 Lupinus albus HOM05D002292 ORTHO05D003256 4.5e-07 57.8 76 52.6
Duzib052G0792 Durio zibethinus HOM05D002292 ORTHO05D003256 7.6e-07 57.0 60 55.0
ECA246G1445 Erigeron canadensis HOM05D002292 ORTHO05D003256 7.6e-07 57.0 60 61.7
Haze_13362 Corylus avellana HOM05D002292 ORTHO05D012672 9.9e-07 56.6 77 62.3
Lj3g0005030 Lotus japonicus HOM05D002292 ORTHO05D003256 9.9e-07 56.6 75 54.7
Lalb_Chr19g0135111 Lupinus albus HOM05D002292 ORTHO05D003256 9.9e-07 56.6 76 51.3
Psat4g001960 Pisum sativum HOM05D002292 ORTHO05D003256 9.9e-07 56.6 74 48.6
Prupe.3G134800 Prunus persica HOM05D002292 ORTHO05D003256 9.9e-07 56.6 74 58.1
SEGI_41616 Sequoiadendron giganteum HOM05D002292 ORTHO05D003256 9.9e-07 56.6 50 66.0
AagrBONN_evm.TU.Sc2ySwM_228.5526 Anthoceros agrestis HOM05D002292 ORTHO05D003256 1.3e-06 56.2 29 93.1
COL.COLO4_18044 Corchorus olitorius HOM05D002292 ORTHO05D003256 1.3e-06 56.2 29 96.6
Psat7g137480 Pisum sativum HOM05D002292 ORTHO05D003256 1.3e-06 56.2 75 49.3
Aa31LG2G21960 Aethionema arabicum HOM05D002292 ORTHO05D003256 2.2e-06 55.5 62 74.2
Ca_18922_v3 Cicer arietinum L. HOM05D002292 ORTHO05D003256 2.2e-06 55.5 75 49.3
Ca_29531_v3 Cicer arietinum L. HOM05D002292 ORTHO05D003256 2.2e-06 55.5 75 49.3
Glyma.12G117600 Glycine max HOM05D002292 ORTHO05D003256 2.2e-06 55.5 75 53.3
BcaB03g12574 Brassica carinata HOM05D002292 ORTHO05D003256 2.9e-06 55.1 79 57.0
Lalb_Chr01g0005091 Lupinus albus HOM05D002292 ORTHO05D003256 2.9e-06 55.1 76 51.3
TAR369G0796 Trochodendron aralioides HOM05D002292 ORTHO05D003256 3.8e-06 54.7 29 89.7
VMungo1127G1900 Vigna mungo HOM05D002292 ORTHO05D003256 3.8e-06 54.7 75 50.7
Actinidia11105 Actinidia chinensis HOM05D002292 ORTHO05D003256 4.9e-06 54.3 76 67.1
CDE06G2259 Ceratophyllum demersum HOM05D002292 ORTHO05D003256 4.9e-06 54.3 80 57.5
CDE12G0508 Ceratophyllum demersum HOM05D002292 ORTHO05D003256 4.9e-06 54.3 80 57.5
QL08p040017 Quercus lobata HOM05D002292 ORTHO05D003256 4.9e-06 54.3 29 93.1
QL08p040049 Quercus lobata HOM05D002292 ORTHO05D003256 4.9e-06 54.3 29 93.1
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 4.9e-06 54.3 29 93.1
Glyma.06G289400 Glycine max HOM05D002292 ORTHO05D003256 6.4e-06 53.9 75 52.0
HPP92_006718 Vanilla planifolia HOM05D002292 ORTHO05D003256 6.4e-06 53.9 29 89.7
PSO210G2625 Papaver somniferum HOM05D002292 ORTHO05D003256 8.4e-06 53.5 77 59.7
TPR.G5998 Trifolium pratense HOM05D002292 ORTHO05D003256 8.4e-06 53.5 75 48.0
HPP92_006722 Vanilla planifolia HOM05D002292 ORTHO05D003256 8.4e-06 53.5 60 70.0


User provided reference genes

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