Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0020349g0050 Nicotiana tabacum HOM05D000540 ORTHO05D008899 6.7e-47 190.3 92 100.0
CAN.G1109.8 Capsicum annuum HOM05D000540 ORTHO05D008899 1.4e-41 172.6 94 91.5
CAN.G114.6 Capsicum annuum HOM05D000540 ORTHO05D008899 1.4e-41 172.6 94 91.5
CAN.G781.25 Capsicum annuum HOM05D000540 ORTHO05D008899 1.4e-41 172.6 94 91.5
Sed0007321 Sechium edule HOM05D000540 ORTHO05D008899 1.4e-41 172.6 94 91.5
MELO3C028092.2 Cucumis melo HOM05D000540 ORTHO05D008899 1.9e-41 172.2 94 91.5
LjContig00489g0018536 Lotus japonicus HOM05D000540 ORTHO05D008899 1.9e-41 172.2 94 91.5
Sed0004093 Sechium edule HOM05D000540 ORTHO05D008899 1.9e-41 172.2 94 91.5
Sed0008426 Sechium edule HOM05D000540 ORTHO05D008899 1.9e-41 172.2 94 91.5
Sed0015411 Sechium edule HOM05D000540 ORTHO05D008899 1.9e-41 172.2 94 91.5
Sed0019752 Sechium edule HOM05D000540 ORTHO05D008899 1.9e-41 172.2 94 91.5
Sed0026411 Sechium edule HOM05D000540 ORTHO05D008899 1.9e-41 172.2 94 91.5
SalBow1G0808 Salvia bowleyana HOM05D000540 ORTHO05D008899 3.2e-41 171.4 94 90.4
SalBow1G3106 Salvia bowleyana HOM05D000540 ORTHO05D008899 3.2e-41 171.4 94 90.4
PGR111G0050 Punica granatum HOM05D000540 ORTHO05D008899 4.2e-41 171.0 94 90.4
PGR111G0124 Punica granatum HOM05D000540 ORTHO05D008899 4.2e-41 171.0 94 90.4
RcHm_v2.0_Chr2g0118491 Rosa chinensis HOM05D000540 ORTHO05D008899 5.5e-41 170.6 94 90.4
Nn020s41485 Nelumbo nucifera HOM05D000540 ORTHO05D008899 7.2e-41 170.2 94 90.4
Nn5g27213 Nelumbo nucifera HOM05D000540 ORTHO05D008899 7.2e-41 170.2 94 90.4
RcHm_v2.0_CPg0502591 Rosa chinensis HOM05D000540 ORTHO05D008899 7.2e-41 170.2 94 90.4
DCAR_032528 Daucus carota HOM05D000540 ORTHO05D008899 1.6e-40 169.1 94 90.4
DCAR_032548 Daucus carota HOM05D000540 ORTHO05D008899 1.6e-40 169.1 94 90.4
CsaV3_UNG209010 Cucumis sativus L. HOM05D000540 ORTHO05D008899 2.1e-40 168.7 93 90.3
HanXRQChr00c0165g0572201 Helianthus annuus HOM05D000540 ORTHO05D008899 2.1e-40 168.7 94 89.4
HanXRQChr00c0368g0574201 Helianthus annuus HOM05D000540 ORTHO05D008899 2.1e-40 168.7 94 89.4
HanXRQChr00c0496g0575201 Helianthus annuus HOM05D000540 ORTHO05D008899 2.1e-40 168.7 94 89.4
HanXRQChr00c0572g0575951 Helianthus annuus HOM05D000540 ORTHO05D008899 2.1e-40 168.7 94 89.4
HanXRQChr00c0585g0576271 Helianthus annuus HOM05D000540 ORTHO05D008899 2.1e-40 168.7 94 89.4
HanXRQChr05g0152521 Helianthus annuus HOM05D000540 ORTHO05D008899 2.1e-40 168.7 94 89.4
HanXRQChr10g0284441 Helianthus annuus HOM05D000540 ORTHO05D008899 2.1e-40 168.7 94 89.4
HanXRQChr10g0318001 Helianthus annuus HOM05D000540 ORTHO05D008899 2.1e-40 168.7 94 89.4
HanXRQChr11g0321161 Helianthus annuus HOM05D000540 ORTHO05D008899 2.1e-40 168.7 94 89.4
HanXRQChr13g0416611 Helianthus annuus HOM05D000540 ORTHO05D008899 2.1e-40 168.7 94 89.4
HanXRQChr15g0488331 Helianthus annuus HOM05D000540 ORTHO05D008899 2.1e-40 168.7 94 89.4
Gohir.A04G039075 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.7e-40 168.3 94 89.4
Peaxi162Scf00211g00237 Petunia axillaris HOM05D000540 ORTHO05D008899 3.6e-40 167.9 94 90.4
Potri.005G154350 Populus trichocarpa HOM05D000540 ORTHO05D008899 3.6e-40 167.9 94 89.4
Potri.013G138612 Populus trichocarpa HOM05D000540 ORTHO05D008899 3.6e-40 167.9 94 89.4
GSVIVG01023980001 Vitis vinifera HOM05D000540 ORTHO05D008899 3.6e-40 167.9 94 89.4
Nn1g08201 Nelumbo nucifera HOM05D000540 ORTHO05D008899 6.1e-40 167.2 94 88.3
AL2G20490 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 7.9e-40 166.8 94 88.3
AL4G23550 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 7.9e-40 166.8 94 88.3
ATCG00840 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 7.9e-40 166.8 94 88.3
ATCG01300 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 7.9e-40 166.8 94 88.3
CARHR282300 Cardamine hirsuta HOM05D000540 ORTHO05D008899 7.9e-40 166.8 94 88.3
CARHR282570 Cardamine hirsuta HOM05D000540 ORTHO05D008899 7.9e-40 166.8 94 88.3
Gohir.D01G102216 Gossypium hirsutum HOM05D000540 ORTHO05D008899 7.9e-40 166.8 94 88.3
Lalb_Chr07g0191961 Lupinus albus HOM05D000540 ORTHO05D008899 1.0e-39 166.4 94 89.4
Gohir.A10G084500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.3e-39 165.2 94 87.2
AL2G21780 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 3.0e-39 164.9 94 87.2
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 6.7e-39 163.7 92 85.9
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 6.7e-39 163.7 94 88.3
PSO548G0098 Papaver somniferum HOM05D000540 ORTHO05D008899 1.1e-38 162.9 94 88.3
PSO548G0119 Papaver somniferum HOM05D000540 ORTHO05D008899 1.1e-38 162.9 94 88.3
Gohir.1Z050392 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.0e-38 162.2 94 87.2
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 5.7e-38 160.6 94 86.2
Gohir.D06G104900 Gossypium hirsutum HOM05D000540 ORTHO05D008899 7.4e-38 160.2 94 84.0
Gorai.007G229500 Gossypium raimondii HOM05D000540 ORTHO05D008899 1.7e-37 159.1 94 85.1
Lj4g0015929 Lotus japonicus HOM05D000540 ORTHO05D008899 8.2e-37 156.8 94 84.0
Nn4g25233 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.1e-36 156.4 94 84.0
Nitab4.5_0014666g0090 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.4e-36 156.0 92 85.9
LjContig00318g0005310 Lotus japonicus HOM05D000540 ORTHO05D008899 1.8e-36 155.6 94 84.0
LjContig00318g0024355 Lotus japonicus HOM05D000540 ORTHO05D008899 1.8e-36 155.6 94 84.0
LjContig00319g0005990 Lotus japonicus HOM05D000540 ORTHO05D008899 1.8e-36 155.6 94 84.0
LjContig00319g0017169 Lotus japonicus HOM05D000540 ORTHO05D008899 1.8e-36 155.6 94 84.0
Gohir.D11G213500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 7.0e-36 153.7 94 83.0
CAN.G1468.2 Capsicum annuum HOM05D000540 ORTHO05D008899 9.1e-36 153.3 94 83.0
Gohir.D04G085766 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.2e-35 152.9 94 81.9
Sed0012077 Sechium edule HOM05D000540 ORTHO05D008899 1.6e-35 152.5 92 83.7
Gohir.D06G105280 Gossypium hirsutum HOM05D000540 ORTHO05D008899 5.9e-35 150.6 94 81.9
CAN.G895.34 Capsicum annuum HOM05D000540 ORTHO05D008899 1.7e-34 149.1 94 81.9
HanXRQChr09g0256691 Helianthus annuus HOM05D000540 ORTHO05D008899 1.7e-34 149.1 83 89.2
Peaxi162Scf00483g00319 Petunia axillaris HOM05D000540 ORTHO05D008899 1.7e-34 149.1 81 92.6
CAN.G895.33 Capsicum annuum HOM05D000540 ORTHO05D008899 2.9e-34 148.3 94 83.0
Migut.D01325 Erythranthe guttata HOM05D000540 ORTHO05D000681 8.5e-34 146.7 82 89.0
HanXRQChr11g0352351 Helianthus annuus HOM05D000540 ORTHO05D000681 1.1e-33 146.4 82 89.0
Gohir.A12G089000 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.5e-33 146.0 81 90.1
HanXRQChr00c0349g0573971 Helianthus annuus HOM05D000540 ORTHO05D000681 3.2e-33 144.8 83 86.7
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.6e-32 142.5 81 88.9
Lalb_Chr25g0281971 Lupinus albus HOM05D000540 ORTHO05D008899 3.6e-32 141.4 94 75.5
BolSC56t61242H Brassica oleracea HOM05D000540 ORTHO05D008899 4.7e-32 141.0 84 82.1
AL1G45030 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 5.2e-31 137.5 76 88.2
Medtr0002s0350 Medicago truncatula HOM05D000540 ORTHO05D008899 6.7e-31 137.1 82 80.5
BolC2t10582H Brassica oleracea HOM05D000540 ORTHO05D008899 1.5e-30 136.0 76 86.8
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 7.5e-30 133.7 84 78.6
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.2e-29 132.1 76 84.2
HanXRQChr13g0413481 Helianthus annuus HOM05D000540 ORTHO05D008899 6.3e-29 130.6 74 87.8
HanXRQChr00c0451g0574831 Helianthus annuus HOM05D000540 ORTHO05D008899 7.0e-28 127.1 72 87.5
Lsat_1_v5_gn_5_27661 Lactuca sativa HOM05D000540 ORTHO05D008899 3.5e-27 124.8 69 88.4
Lsat_1_v5_gn_7_82661 Lactuca sativa HOM05D000540 ORTHO05D008899 3.5e-27 124.8 69 88.4
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 1.0e-26 123.2 66 90.9
Medtr4g047920 Medicago truncatula HOM05D000540 ORTHO05D000681 2.2e-26 122.1 79 78.5
Ciclev10010272m.g Citrus clementina HOM05D000540 ORTHO05D008899 5.0e-26 120.9 94 71.3
Medtr4g051430 Medicago truncatula HOM05D000540 ORTHO05D000681 6.5e-26 120.6 79 78.5
ClCG00G001570 Citrullus lanatus HOM05D000540 ORTHO05D008899 1.1e-25 119.8 72 83.3
ClCG10G020130 Citrullus lanatus HOM05D000540 ORTHO05D008899 2.5e-25 118.6 94 67.0
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.5e-25 118.6 74 81.1
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 1.2e-24 116.3 67 86.6
GSVIVG01023244001 Vitis vinifera HOM05D000540 ORTHO05D008899 1.2e-24 116.3 86 67.4
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.8e-23 112.5 87 66.7
Potri.011G074401 Populus trichocarpa HOM05D000540 ORTHO05D000681 2.3e-23 112.1 66 86.4
GSVIVG01010311001 Vitis vinifera HOM05D000540 ORTHO05D008899 1.5e-22 109.4 63 88.9
Nn021s41514 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.6e-22 108.6 75 74.7
Nn145s44091 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.6e-22 108.6 75 74.7
Nn3g16152 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.6e-22 108.6 75 74.7
Peaxi162Scf00525g00033 Petunia axillaris HOM05D000540 ORTHO05D008899 2.6e-22 108.6 60 86.7
HanXRQChr03g0073071 Helianthus annuus HOM05D000540 ORTHO05D008899 2.2e-21 105.5 63 84.1
Migut.D01406 Erythranthe guttata HOM05D000540 ORTHO05D000681 1.1e-20 103.2 73 75.3
HanXRQChr00c0126g0571811 Helianthus annuus HOM05D000540 ORTHO05D000681 1.8e-20 102.4 83 66.3
CSS0033691 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 4.5e-19 97.8 73 67.1
CSS0035327 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 1.7e-18 95.9 53 88.7
Nitab4.5_0004376g0180 Nicotiana tabacum HOM05D000540 ORTHO05D008899 3.8e-18 94.7 59 81.4
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 4.2e-17 91.3 80 63.8
Nn1g04854 Nelumbo nucifera HOM05D000540 ORTHO05D008899 7.2e-17 90.5 58 82.8
HanXRQChr00c0512g0575371 Helianthus annuus HOM05D000540 ORTHO05D008899 1.6e-16 89.4 62 79.0
Sed0017282 Sechium edule HOM05D000540 ORTHO05D000681 3.6e-16 88.2 44 90.9
Lalb_Chr13g0292941 Lupinus albus HOM05D000540 ORTHO05D008899 1.0e-15 86.7 55 81.8
Lsat_1_v5_gn_3_85660 Lactuca sativa HOM05D000445 ORTHO05D008899 1.8e-15 85.9 49 85.7
Nn1g08182 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.8e-15 85.9 45 91.1
Sed0006593 Sechium edule HOM05D000540 ORTHO05D000681 1.8e-15 85.9 44 88.6
TAR636G2296 Trochodendron aralioides HOM05D000216 ORTHO05D008899 2.3e-15 85.5 43 95.3
arahy.Tifrunner.gnm1.ann1.LF45NH Arachis hypogaea HOM05D000540 ORTHO05D000681 8.8e-15 83.6 77 62.3
vmacro07326 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 1.2e-14 83.2 61 72.1
Gohir.D11G067360 Gossypium hirsutum HOM05D000540 ORTHO05D000681 4.4e-14 81.3 43 86.0
HanXRQChr07g0194921 Helianthus annuus HOM05D000540 ORTHO05D008899 5.7e-14 80.9 45 82.2
BraSC103t45440Z Brassica rapa HOM05D000540 ORTHO05D008899 2.2e-13 79.0 41 92.7
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.2e-13 79.0 45 82.2
Oeu062848.1 Olea europaea HOM05D000540 ORTHO05D008899 3.7e-13 78.2 82 54.9
CiPaw.06G075700 Carya illinoinensis HOM05D000540 ORTHO05D008899 4.9e-13 77.8 68 63.2
ClCG00G001500 Citrullus lanatus HOM05D000540 ORTHO05D008899 4.5e-11 71.2 35 94.3
EL10Ac9g22727 Beta vulgaris HOM05D000540 ORTHO05D008899 1.7e-10 69.3 41 82.9
Nn4g25231 Nelumbo nucifera HOM05D000540 ORTHO05D008899 8.6e-10 67.0 37 86.5
CAN.G1690.3 Capsicum annuum HOM05D000540 ORTHO05D000681 1.1e-09 66.6 32 93.8
HanXRQChr00c0533g0575581 Helianthus annuus HOM05D000540 ORTHO05D008899 2.5e-09 65.5 35 91.4
Medtr2g098600 Medicago truncatula HOM05D000540 ORTHO05D008899 2.5e-09 65.5 47 72.3
Migut.K00974 Erythranthe guttata HOM05D000540 ORTHO05D000681 2.1e-08 62.4 30 90.0
SMO086G0037 Selaginella moellendorffii HOM05D000540 ORTHO05D008899 4.4e-06 54.7 89 39.3


User provided reference genes

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