Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0016448g0010 Nicotiana tabacum HOM05D004170 ORTHO05D005976 1.4e-98 363.2 217 100.0
Nitab4.5_0015880g0010 Nicotiana tabacum HOM05D004170 ORTHO05D005976 3.4e-49 199.1 163 85.3
Peaxi162Scf00286g00334 Petunia axillaris HOM05D004170 ORTHO05D005976 9.9e-41 171.0 165 73.9
Sopen09g036320 Solanum pennellii HOM05D004170 ORTHO05D005976 1.3e-35 154.1 165 69.7
Solyc09g098390.3 Solanum lycopersicum HOM05D004170 ORTHO05D005976 7.6e-33 144.8 165 67.3
PGSC0003DMG400021605 Solanum tuberosum HOM05D004170 ORTHO05D005976 1.3e-24 117.5 165 61.2
Lj8C30T5 Lonicera japonica HOM05D004170 ORTHO05D005976 1.4e-15 87.4 84 61.9
MSTRG.27998 Avicennia marina HOM05D004170 ORTHO05D005976 1.6e-14 84.0 111 53.2
Cc03_g15010 Coffea canephora HOM05D004170 ORTHO05D005976 6.1e-14 82.0 166 38.6
VMungo1383G1615 Vigna mungo HOM05D004170 ORTHO05D005976 6.1e-14 82.0 120 45.8
TAR633G2752 Trochodendron aralioides HOM05D004170 ORTHO05D005976 1.8e-13 80.5 60 66.7
Glyma.18G296100 Glycine max HOM05D004170 ORTHO05D005976 6.7e-13 78.6 118 46.6
Phvul.008G006500 Phaseolus vulgaris HOM05D004170 ORTHO05D005976 1.5e-12 77.4 109 45.0
Cfa015770 Carpinus fangiana HOM05D004170 ORTHO05D005976 3.3e-12 76.3 49 75.5
Haze_00731 Corylus avellana HOM05D004170 ORTHO05D005976 3.3e-12 76.3 49 75.5
TAR633G1202 Trochodendron aralioides HOM05D004170 ORTHO05D005976 5.7e-12 75.5 60 63.3
TAR633G2111 Trochodendron aralioides HOM05D004170 ORTHO05D005976 5.7e-12 75.5 60 63.3
CSS0008998 Camellia sinensis var. sinensis HOM05D004170 ORTHO05D005976 7.4e-12 75.1 66 59.1
Atru.chr1.1118 Acer truncatum HOM05D004170 ORTHO05D005976 9.7e-12 74.7 45 77.8
Nn6g32161 Nelumbo nucifera HOM05D004170 ORTHO05D005976 1.7e-11 73.9 65 64.6
vmacro15642 Vaccinium macrocarpon HOM05D004170 ORTHO05D005976 1.7e-11 73.9 49 71.4
Glyma.08G366200 Glycine max HOM05D004170 ORTHO05D005976 2.2e-11 73.6 47 68.1
SalBow3G0935 Salvia bowleyana HOM05D004170 ORTHO05D005976 2.2e-11 73.6 72 56.9
ECA248G2970 Erigeron canadensis HOM05D000001 ORTHO05D009083 3.7e-11 72.8 121 44.6
Hund12229 Selenicereus undatus HOM05D004170 ORTHO05D005976 4.8e-11 72.4 46 73.9
Migut.O00710 Erythranthe guttata HOM05D004170 ORTHO05D005976 1.4e-10 70.9 124 44.4
HanXRQChr16g0502641 Helianthus annuus HOM05D004170 ORTHO05D005976 1.8e-10 70.5 64 59.4
Lj1g0005305 Lotus japonicus HOM05D004170 ORTHO05D005976 1.8e-10 70.5 58 58.6
Manes.04G040300 Manihot esculenta HOM05D004170 ORTHO05D005976 1.8e-10 70.5 46 71.7
Sabra17G0021000 Salix brachista HOM05D004170 ORTHO05D005976 1.8e-10 70.5 44 72.7
TAR633G0480 Trochodendron aralioides HOM05D004170 ORTHO05D005976 1.8e-10 70.5 59 62.7
Actinidia39857 Actinidia chinensis HOM05D004170 ORTHO05D005976 2.4e-10 70.1 65 64.6
CANSAT78G0391 Cannabis sativa HOM05D004170 ORTHO05D005976 2.4e-10 70.1 60 58.3
Prupe.1G172700 Prunus persica HOM05D004170 ORTHO05D005976 2.4e-10 70.1 54 63.0
PGR142G1978 Punica granatum HOM05D004170 ORTHO05D005976 2.4e-10 70.1 49 69.4
Rhsim02G0075900 Rhododendron simsii HOM05D004170 ORTHO05D005976 2.4e-10 70.1 116 44.8
CiPaw.01G102400 Carya illinoinensis HOM05D004170 ORTHO05D005976 5.3e-10 68.9 55 65.5
Eucgr.H00407 Eucalyptus grandis HOM05D004170 ORTHO05D005976 5.3e-10 68.9 75 52.0
QL10p047503 Quercus lobata HOM05D004170 ORTHO05D005976 5.3e-10 68.9 48 72.9
arahy.Tifrunner.gnm1.ann1.GESE75 Arachis hypogaea HOM05D004170 ORTHO05D005976 6.9e-10 68.6 82 48.8
arahy.Tifrunner.gnm1.ann1.VAWH7V Arachis hypogaea HOM05D004170 ORTHO05D005976 6.9e-10 68.6 82 48.8
Psat3g098520 Pisum sativum HOM05D004170 ORTHO05D005976 6.9e-10 68.6 81 50.6
Actinidia11308 Actinidia chinensis HOM05D004170 ORTHO05D005976 9.1e-10 68.2 45 75.6
Thecc.05G003100 Theobroma cacao HOM05D004170 ORTHO05D005976 9.1e-10 68.2 46 71.7
TPR.G29080 Trifolium pratense HOM05D004170 ORTHO05D005976 9.1e-10 68.2 46 65.2
GSVIVG01010733001 Vitis vinifera HOM05D004170 ORTHO05D005976 1.2e-09 67.8 46 71.7
MELO3C006785.2 Cucumis melo HOM05D004170 ORTHO05D005976 1.5e-09 67.4 57 61.4
AUR62002598 Chenopodium quinoa HOM05D004170 ORTHO05D005976 2.0e-09 67.0 43 69.8
Ciclev10013958m.g Citrus clementina HOM05D004170 ORTHO05D005976 2.0e-09 67.0 63 60.3
Ciclev10020999m.g Citrus clementina HOM05D004170 ORTHO05D005976 2.0e-09 67.0 63 60.3
Ciclev10021004m.g Citrus clementina HOM05D004170 ORTHO05D005976 2.0e-09 67.0 63 60.3
Eucgr.H00411 Eucalyptus grandis HOM05D004170 ORTHO05D005976 2.0e-09 67.0 62 58.1
Eucgr.H00412 Eucalyptus grandis HOM05D004170 ORTHO05D005976 2.0e-09 67.0 63 57.1
Eucgr.L01383 Eucalyptus grandis HOM05D004170 ORTHO05D005976 2.0e-09 67.0 63 57.1
Lsat_1_v5_gn_1_71660 Lactuca sativa HOM05D004170 ORTHO05D005976 2.0e-09 67.0 65 60.0
Eucgr.H00409 Eucalyptus grandis HOM05D004170 ORTHO05D005976 3.4e-09 66.2 62 58.1
Aqoxy2G04112 Aquilegia oxysepala HOM05D004170 ORTHO05D005976 4.5e-09 65.9 69 52.2
Migut.N02002 Erythranthe guttata HOM05D004170 ORTHO05D005976 4.5e-09 65.9 61 57.4
MBI08_g01805_MAGBIO Magnolia biondii HOM05D004170 ORTHO05D005976 4.5e-09 65.9 42 73.8
RcHm_v2.0_Chr4g0412221 Rosa chinensis HOM05D004170 ORTHO05D005976 4.5e-09 65.9 45 64.4
CsaV3_3G015860 Cucumis sativus L. HOM05D004170 ORTHO05D005976 5.9e-09 65.5 48 64.6
ClCG05G007160 Citrullus lanatus HOM05D004170 ORTHO05D005976 7.7e-09 65.1 115 43.5
Cpa.g.sc2713.1 Carica papaya HOM05D004170 ORTHO05D005976 1.0e-08 64.7 73 50.7
COL.COLO4_14420 Corchorus olitorius HOM05D004170 ORTHO05D005976 1.0e-08 64.7 46 65.2
Ca_08074_v3 Cicer arietinum L. HOM05D003195 ORTHO05D003773 1.3e-08 64.3 58 55.2
Sed0021283 Sechium edule HOM05D004170 ORTHO05D005976 1.3e-08 64.3 34 88.2
CDE02G0576 Ceratophyllum demersum HOM05D004170 ORTHO05D005976 1.7e-08 63.9 74 54.1
Eucgr.H00408 Eucalyptus grandis HOM05D004170 ORTHO05D005976 2.2e-08 63.5 72 50.0
RcHm_v2.0_Chr4g0412301 Rosa chinensis HOM05D004170 ORTHO05D005976 2.2e-08 63.5 45 62.2
MD04G1022600 Malus domestica HOM05D004170 ORTHO05D005976 2.9e-08 63.2 61 54.1
Gohir.A09G168800 Gossypium hirsutum HOM05D004170 ORTHO05D005976 3.8e-08 62.8 44 65.9
Gorai.006G186300 Gossypium raimondii HOM05D004170 ORTHO05D005976 3.8e-08 62.8 44 65.9
Gohir.D09G164500 Gossypium hirsutum HOM05D004170 ORTHO05D005976 1.1e-07 61.2 44 63.6
MD03G1203000 Malus domestica HOM05D004170 ORTHO05D005976 1.4e-07 60.8 61 54.1
AUR62030020 Chenopodium quinoa HOM05D004170 ORTHO05D005976 2.5e-07 60.1 82 47.6
Medtr7g082150 Medicago truncatula HOM05D004170 ORTHO05D005976 2.5e-07 60.1 88 44.3
FvH4_4g12800 Fragaria vesca HOM05D004170 ORTHO05D005976 5.5e-07 58.9 45 62.2
FAN12G0511 Fragaria x ananassa HOM05D004170 ORTHO05D005976 5.5e-07 58.9 45 62.2
Sp4g25470 Schrenkiella parvula HOM05D004170 ORTHO05D005976 2.1e-06 57.0 97 41.2
TWI12G1326 Tripterygium wilfordii HOM05D004170 ORTHO05D005976 2.1e-06 57.0 44 63.6
A03p24220 Brassica napus HOM05D004170 ORTHO05D005976 3.6e-06 56.2 63 49.2
BraA03t11631Z Brassica rapa HOM05D004170 ORTHO05D005976 3.6e-06 56.2 63 49.2
Hma1.2p1_2974F.1_g331120 Hydrangea macrophylla HOM05D004170 ORTHO05D005976 3.6e-06 56.2 29 86.2
FAN07G2475 Fragaria x ananassa HOM05D004170 ORTHO05D005976 4.7e-06 55.8 45 57.8
AT2G43370 Arabidopsis thaliana HOM05D004170 ORTHO05D005976 7.9e-06 55.1 51 56.9
Lalb_Chr17g0335931 Lupinus albus HOM05D004170 ORTHO05D005976 7.9e-06 55.1 116 32.8


User provided reference genes

Program Settings