Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.1e-78 295.8 171 100.0
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 2.3e-64 249.2 168 85.1
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 2.1e-62 242.7 168 83.3
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.7e-59 233.0 168 83.3
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 7.1e-58 227.6 135 96.3
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.5e-55 219.2 169 76.9
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 4.7e-54 214.9 169 76.9
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 1.5e-52 209.9 169 72.2
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 8.3e-51 204.1 169 75.1
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 1.4e-50 203.4 168 75.6
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 1.4e-50 203.4 168 75.6
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 6.0e-49 198.0 169 73.4
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 1.5e-47 193.4 168 66.1
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 1.5e-44 183.3 169 68.0
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 3.4e-44 182.2 171 67.8
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 3.4e-44 182.2 168 70.8
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 2.2e-43 179.5 171 69.0
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 3.2e-42 175.6 170 67.6
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 7.1e-42 174.5 173 68.2
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 7.8e-41 171.0 169 65.7
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 3.0e-40 169.1 170 66.5
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 1.5e-39 166.8 169 65.7
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 1.9e-39 166.4 170 65.9
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 4.3e-39 165.2 169 66.3
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 4.3e-39 165.2 167 59.9
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 7.3e-39 164.5 170 65.9
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 9.6e-39 164.1 181 62.4
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 9.6e-39 164.1 170 65.3
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 1.3e-38 163.7 172 62.2
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.3e-38 163.7 173 63.0
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 2.8e-38 162.5 174 63.2
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 3.6e-38 162.2 172 62.2
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 8.1e-38 161.0 192 57.3
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 4.0e-37 158.7 171 61.4
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 6.9e-37 157.9 169 62.7
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 6.9e-37 157.9 169 63.3
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 1.2e-36 157.1 181 60.8
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 1.2e-36 157.1 169 63.3
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 3.4e-36 155.6 181 59.7
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 4.4e-36 155.2 169 63.3
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 7.6e-36 154.5 181 58.0
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 7.6e-36 154.5 187 57.8
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 9.9e-36 154.1 171 61.4
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 2.2e-35 152.9 179 60.3
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 2.9e-35 152.5 183 57.4
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 3.8e-35 152.1 196 57.7
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 1.1e-34 150.6 167 62.9
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 1.4e-34 150.2 192 56.8
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.4e-34 150.2 192 56.8
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.4e-34 150.2 165 62.4
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.4e-34 150.2 165 62.4
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 1.9e-34 149.8 188 58.5
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.9e-34 149.8 186 52.7
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 2.4e-34 149.4 169 59.2
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 9.3e-34 147.5 185 55.1
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 1.2e-33 147.1 183 56.3
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 1.2e-33 147.1 83 94.0
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 1.6e-33 146.7 179 59.2
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 1.6e-33 146.7 179 59.2
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.6e-33 146.7 185 55.7
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.6e-33 146.7 185 55.7
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 2.1e-33 146.4 170 61.8
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 2.7e-33 146.0 185 54.6
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 6.0e-33 144.8 174 58.0
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 7.8e-33 144.4 169 58.6
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 1.0e-32 144.1 169 58.6
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 1.3e-32 143.7 168 57.7
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 3.0e-32 142.5 185 57.3
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 3.9e-32 142.1 168 60.7
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 1.9e-31 139.8 185 57.8
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 5.6e-31 138.3 190 51.1
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 1.3e-30 137.1 168 59.5
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 1.3e-30 137.1 84 83.3
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 1.3e-30 137.1 200 51.0
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 1.6e-30 136.7 171 55.6
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 2.8e-30 136.0 170 56.5
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 2.8e-30 136.0 84 82.1
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 3.6e-30 135.6 181 56.4
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 4.8e-30 135.2 169 55.6
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 4.8e-30 135.2 174 53.4
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 6.2e-30 134.8 168 57.7
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 1.1e-29 134.0 181 55.2
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 1.4e-29 133.7 168 57.7
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 1.8e-29 133.3 82 87.8
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 5.3e-29 131.7 84 79.8
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 9.0e-29 131.0 137 62.8
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 1.2e-28 130.6 83 80.7
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 2.0e-28 129.8 186 50.5
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 3.4e-28 129.0 169 55.0
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 3.4e-28 129.0 167 55.7
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 4.5e-28 128.6 165 59.4
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 5.8e-28 128.3 196 49.0
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 5.8e-28 128.3 85 77.6
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 7.6e-28 127.9 190 49.5
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 9.9e-28 127.5 168 56.0
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 9.9e-28 127.5 214 50.0
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 2.2e-27 126.3 79 82.3
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 2.2e-27 126.3 168 55.4
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 3.8e-27 125.6 163 54.6
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 6.4e-27 124.8 177 57.6
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 6.4e-27 124.8 85 76.5
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 1.4e-26 123.6 186 51.1
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 1.4e-26 123.6 165 57.6
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 3.2e-26 122.5 183 49.7
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 4.2e-26 122.1 168 54.2
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 5.4e-26 121.7 194 47.9
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 2.1e-25 119.8 82 79.3
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 2.1e-25 119.8 178 47.2
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 1.8e-24 116.7 173 51.4
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 2.3e-24 116.3 200 47.0
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 5.1e-24 115.2 176 47.7
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 5.1e-24 115.2 176 47.7
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 5.1e-24 115.2 183 49.7
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 1.1e-23 114.0 174 48.3
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 4.3e-23 112.1 84 67.9
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 1.3e-22 110.5 62 93.5
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.3e-22 110.5 68 82.4
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 1.6e-22 110.2 168 50.6
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 1.6e-22 110.2 168 50.6
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 2.1e-22 109.8 168 49.4
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 3.7e-22 109.0 169 49.7
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 3.7e-22 109.0 169 49.7
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 4.8e-22 108.6 63 90.5
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 3.1e-21 105.9 62 88.7
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 6.9e-21 104.8 147 55.1
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 9.0e-21 104.4 166 45.8
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 9.0e-21 104.4 165 44.8
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 1.2e-20 104.0 171 47.4
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 4.5e-20 102.1 180 43.9
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 3.8e-19 99.0 164 48.2
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 8.4e-19 97.8 167 46.7
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 1.1e-18 97.4 170 41.8
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 1.2e-17 94.0 82 63.4
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 1.6e-17 93.6 127 52.8
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 2.3e-16 89.7 83 61.4
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 6.7e-16 88.2 84 52.4
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 1.9e-15 86.7 55 76.4
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 4.3e-15 85.5 171 42.7
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 4.3e-15 85.5 180 40.6
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 5.7e-15 85.1 102 51.0
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 9.6e-15 84.3 76 64.5
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 2.1e-14 83.2 168 40.5
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 4.8e-14 82.0 66 68.2
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 2.4e-13 79.7 84 58.3
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 3.1e-13 79.3 90 55.6
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 2.6e-12 76.3 66 65.2
Solyc05g016715.1 Solanum lycopersicum HOM05D001240 ORTHO05D037679 4.5e-12 75.5 104 56.7
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 3.2e-10 69.3 60 55.0
Sc19g0001960 Simmondsia chinensis HOM05D004341 ORTHO05D005075 3.2e-10 69.3 108 52.8
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 5.5e-10 68.6 172 42.4
TWI63G1746 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 2.7e-09 66.2 106 44.3
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 3.5e-09 65.9 51 64.7
Dinv14194 Davidia involucrata HOM05D004341 ORTHO05D005075 3.9e-08 62.4 109 50.5
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 2.8e-06 56.2 65 46.2


User provided reference genes

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