Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0015265g0010 Nicotiana tabacum HOM05D003536 ORTHO05D004233 1.9e-28 128.6 72 100.0
Nitab4.5_0006944g0020 Nicotiana tabacum HOM05D003536 ORTHO05D004233 9.3e-20 99.8 66 83.3
Peaxi162Scf00341g00410 Petunia axillaris HOM05D003536 ORTHO05D004233 2.3e-18 95.1 66 78.8
RhsimUnG0015200 Rhododendron simsii HOM05D003536 ORTHO05D004233 6.7e-18 93.6 63 79.4
CAN.G1139.15 Capsicum annuum HOM05D003536 ORTHO05D004233 2.8e-16 88.2 52 84.6
Rhsim02G0085700 Rhododendron simsii HOM05D003536 ORTHO05D004233 3.7e-16 87.8 52 86.5
Sopen12g031020 Solanum pennellii HOM05D003536 ORTHO05D004233 3.7e-16 87.8 52 84.6
PGSC0003DMG400015457 Solanum tuberosum HOM05D003536 ORTHO05D004233 3.7e-16 87.8 52 84.6
Solyc12g089150.2 Solanum lycopersicum HOM05D003536 ORTHO05D004233 4.8e-16 87.4 52 82.7
Oeu018052.1 Olea europaea HOM05D003536 ORTHO05D004233 6.3e-16 87.0 52 84.6
Oeu039254.1 Olea europaea HOM05D003536 ORTHO05D004233 6.3e-16 87.0 54 79.6
Sc12g0007550 Simmondsia chinensis HOM05D003536 ORTHO05D004233 6.3e-16 87.0 52 84.6
CANSAT11G2387 Cannabis sativa HOM05D003536 ORTHO05D004233 8.2e-16 86.7 52 84.6
COL.COLO4_31399 Corchorus olitorius HOM05D003536 ORTHO05D004233 8.2e-16 86.7 52 84.6
HanXRQChr14g0462891 Helianthus annuus HOM05D003536 ORTHO05D004233 1.1e-15 86.3 52 82.7
Sed0014057 Sechium edule HOM05D003536 ORTHO05D004233 1.1e-15 86.3 52 82.7
ECA238G2064 Erigeron canadensis HOM05D003536 ORTHO05D004233 1.4e-15 85.9 52 84.6
Lsat_1_v5_gn_2_134160 Lactuca sativa HOM05D003536 ORTHO05D004233 1.4e-15 85.9 52 82.7
CiPaw.11G159200 Carya illinoinensis HOM05D003536 ORTHO05D004233 1.8e-15 85.5 52 82.7
DCAR_019273 Daucus carota HOM05D003536 ORTHO05D004233 1.8e-15 85.5 53 81.1
SGA_v2.0_scaffold189G40381 Striga asiatica HOM05D003536 ORTHO05D004233 1.8e-15 85.5 52 82.7
Ciclev10009295m.g Citrus clementina HOM05D003536 ORTHO05D004233 2.4e-15 85.1 72 68.1
Eucgr.J00643 Eucalyptus grandis HOM05D003536 ORTHO05D004233 2.4e-15 85.1 52 80.8
FvH4_3g22850 Fragaria vesca HOM05D003536 ORTHO05D004233 2.4e-15 85.1 52 82.7
FAN16G1068 Fragaria x ananassa HOM05D003536 ORTHO05D004233 2.4e-15 85.1 52 82.7
FAN21G1823 Fragaria x ananassa HOM05D003536 ORTHO05D004233 2.4e-15 85.1 52 82.7
FAN25G2670 Fragaria x ananassa HOM05D003536 ORTHO05D004233 2.4e-15 85.1 52 82.7
Gohir.A01G165866 Gossypium hirsutum HOM05D003536 ORTHO05D004233 2.4e-15 85.1 54 79.6
RcHm_v2.0_Chr5g0040091 Rosa chinensis HOM05D003536 ORTHO05D004233 2.4e-15 85.1 52 82.7
MD03G1200000 Malus domestica HOM05D003536 ORTHO05D004233 3.1e-15 84.7 52 82.7
QL08p025876 Quercus lobata HOM05D003536 ORTHO05D004233 4.1e-15 84.3 52 82.7
Atru.chr11.1823 Acer truncatum HOM05D003536 ORTHO05D004233 5.3e-15 84.0 52 80.8
MD11G1217000 Malus domestica HOM05D003536 ORTHO05D004233 5.3e-15 84.0 52 80.8
Prupe.4G214600 Prunus persica HOM05D003536 ORTHO05D004233 5.3e-15 84.0 52 80.8
Atru.chr2.3484 Acer truncatum HOM05D003536 ORTHO05D004233 6.9e-15 83.6 52 78.8
A08p25480 Brassica napus HOM05D003536 ORTHO05D004233 6.9e-15 83.6 52 80.8
BraA08t34499Z Brassica rapa HOM05D003536 ORTHO05D004233 6.9e-15 83.6 52 80.8
Cfa019551 Carpinus fangiana HOM05D003536 ORTHO05D004233 6.9e-15 83.6 53 81.1
AUR62037629 Chenopodium quinoa HOM05D003536 ORTHO05D004233 6.9e-15 83.6 71 64.8
Haze_23535 Corylus avellana HOM05D003536 ORTHO05D004233 6.9e-15 83.6 53 81.1
DCAR_012946 Daucus carota HOM05D003536 ORTHO05D004233 6.9e-15 83.6 66 68.2
Sp1g24750 Schrenkiella parvula HOM05D003536 ORTHO05D004233 6.9e-15 83.6 53 79.2
MSTRG.15254 Avicennia marina HOM05D003536 ORTHO05D004233 9.0e-15 83.2 72 66.7
CSS0046625 Camellia sinensis var. sinensis HOM05D003536 ORTHO05D004233 9.0e-15 83.2 52 80.8
Cc03_g14490 Coffea canephora HOM05D003536 ORTHO05D004233 9.0e-15 83.2 52 80.8
Duzib160G0652 Durio zibethinus HOM05D003536 ORTHO05D004233 9.0e-15 83.2 72 66.7
Duzib192G0083 Durio zibethinus HOM05D003536 ORTHO05D004233 9.0e-15 83.2 72 65.3
Duzib235G0074 Durio zibethinus HOM05D003536 ORTHO05D004233 9.0e-15 83.2 72 65.3
Gohir.A05G158100 Gossypium hirsutum HOM05D003536 ORTHO05D004233 9.0e-15 83.2 52 78.8
Sabra11G0041300 Salix brachista HOM05D003536 ORTHO05D004233 9.0e-15 83.2 52 80.8
Sed0001901 Sechium edule HOM05D003536 ORTHO05D004233 9.0e-15 83.2 52 80.8
SGA_v2.0_scaffold20G08963 Striga asiatica HOM05D003536 ORTHO05D004233 9.0e-15 83.2 52 80.8
Thecc.06G179100 Theobroma cacao HOM05D003536 ORTHO05D004233 9.0e-15 83.2 72 65.3
TWI63G0523 Tripterygium wilfordii HOM05D003536 ORTHO05D004233 9.0e-15 83.2 52 78.8
EL10Ac2g03342 Beta vulgaris HOM05D003536 ORTHO05D004233 1.2e-14 82.8 52 78.8
MELO3C022490.2 Cucumis melo HOM05D003536 ORTHO05D004233 1.2e-14 82.8 72 66.7
CsaV3_6G006300 Cucumis sativus L. HOM05D003536 ORTHO05D004233 1.2e-14 82.8 72 66.7
Gohir.A09G074000 Gossypium hirsutum HOM05D003536 ORTHO05D004233 1.2e-14 82.8 52 78.8
Gohir.D09G073600 Gossypium hirsutum HOM05D003536 ORTHO05D004233 1.2e-14 82.8 52 78.8
Gorai.006G088600 Gossypium raimondii HOM05D003536 ORTHO05D004233 1.2e-14 82.8 52 78.8
THA.LOC104820574 Tarenaya hassleriana HOM05D003536 ORTHO05D004233 1.2e-14 82.8 52 78.8
TWI38G2316 Tripterygium wilfordii HOM05D003536 ORTHO05D004233 1.2e-14 82.8 52 80.8
BcaB03g12101 Brassica carinata HOM05D003536 ORTHO05D004233 1.5e-14 82.4 52 78.8
BcaB03g13924 Brassica carinata HOM05D003536 ORTHO05D004233 1.5e-14 82.4 52 78.8
BcaB07g32470 Brassica carinata HOM05D003536 ORTHO05D004233 1.5e-14 82.4 52 78.8
BcaC01g00063 Brassica carinata HOM05D003536 ORTHO05D004233 1.5e-14 82.4 52 78.8
BcaC05g26899 Brassica carinata HOM05D003536 ORTHO05D004233 1.5e-14 82.4 52 78.8
A07p11150 Brassica napus HOM05D003536 ORTHO05D004233 1.5e-14 82.4 52 78.8
A09p37550 Brassica napus HOM05D003536 ORTHO05D004233 1.5e-14 82.4 52 78.8
C05p27490 Brassica napus HOM05D003536 ORTHO05D004233 1.5e-14 82.4 52 78.8
BolC3t19791H Brassica oleracea HOM05D003536 ORTHO05D004233 1.5e-14 82.4 52 78.8
BolC5t31469H Brassica oleracea HOM05D003536 ORTHO05D004233 1.5e-14 82.4 52 78.8
BolC7t42188H Brassica oleracea HOM05D003536 ORTHO05D004233 1.5e-14 82.4 52 78.8
BraA07t28906Z Brassica rapa HOM05D003536 ORTHO05D004233 1.5e-14 82.4 52 78.8
BraA09t39265Z Brassica rapa HOM05D003536 ORTHO05D004233 1.5e-14 82.4 52 78.8
CSS0012110 Camellia sinensis var. sinensis HOM05D003536 ORTHO05D004233 1.5e-14 82.4 52 80.8
Thhalv10008609m.g Eutrema salsugineum HOM05D003536 ORTHO05D004233 1.5e-14 82.4 52 78.8
Gohir.A10G028700 Gossypium hirsutum HOM05D003536 ORTHO05D004233 1.5e-14 82.4 52 78.8
HanXRQChr15g0493141 Helianthus annuus HOM05D003536 ORTHO05D004233 1.5e-14 82.4 52 78.8
Medtr3g052210 Medicago truncatula HOM05D003536 ORTHO05D004233 1.5e-14 82.4 73 65.8
QL01p015305 Quercus lobata HOM05D003536 ORTHO05D004233 1.5e-14 82.4 72 62.5
THA.LOC104812620 Tarenaya hassleriana HOM05D003536 ORTHO05D004233 1.5e-14 82.4 52 78.8
unitig_37.g12355 Utricularia gibba HOM05D003536 ORTHO05D004233 1.5e-14 82.4 52 78.8
unitig_46.g18655 Utricularia gibba HOM05D003536 ORTHO05D004233 1.5e-14 82.4 52 78.8
Aqoxy1G04249 Aquilegia oxysepala HOM05D003536 ORTHO05D004233 2.0e-14 82.0 52 80.8
CSS0007932 Camellia sinensis var. sinensis HOM05D003536 ORTHO05D004233 2.0e-14 82.0 52 80.8
Cpa.g.sc7.5 Carica papaya HOM05D003536 ORTHO05D004233 2.0e-14 82.0 52 80.8
Dinv05292 Davidia involucrata HOM05D003536 ORTHO05D004233 2.0e-14 82.0 52 78.8
TPR.G33765 Trifolium pratense HOM05D003536 ORTHO05D004233 2.0e-14 82.0 73 65.8
VMungo0647G0941 Vigna mungo HOM05D003536 ORTHO05D004233 2.0e-14 82.0 72 63.9
C07p16800 Brassica napus HOM05D003536 ORTHO05D004233 2.6e-14 81.6 52 78.8
CiPaw.12G113000 Carya illinoinensis HOM05D003536 ORTHO05D004233 2.6e-14 81.6 72 65.3
AUR62039177 Chenopodium quinoa HOM05D003536 ORTHO05D004233 2.6e-14 81.6 62 67.7
Dinv33222 Davidia involucrata HOM05D003536 ORTHO05D004233 2.6e-14 81.6 52 78.8
Manes.08G040100 Manihot esculenta HOM05D003536 ORTHO05D004233 2.6e-14 81.6 52 80.8
Medtr5g092870 Medicago truncatula HOM05D003536 ORTHO05D004233 2.6e-14 81.6 52 78.8
Carub.0001s2696 Capsella rubella HOM05D003536 ORTHO05D004233 3.4e-14 81.3 52 78.8
AL1G42100 Arabidopsis lyrata HOM05D003536 ORTHO05D004233 4.5e-14 80.9 52 78.8
AT1G28490 Arabidopsis thaliana HOM05D003536 ORTHO05D004233 4.5e-14 80.9 52 78.8
CARHR027980 Cardamine hirsuta HOM05D003536 ORTHO05D004233 4.5e-14 80.9 52 78.8
Manes.09G040400 Manihot esculenta HOM05D003536 ORTHO05D004233 4.5e-14 80.9 72 65.3
PGR119G0635 Punica granatum HOM05D003536 ORTHO05D004233 4.5e-14 80.9 72 65.3
Gohir.D10G029100 Gossypium hirsutum HOM05D003536 ORTHO05D004233 5.9e-14 80.5 52 76.9
Gorai.011G031000 Gossypium raimondii HOM05D003536 ORTHO05D004233 5.9e-14 80.5 52 76.9
Lsat_1_v5_gn_9_58001 Lactuca sativa HOM05D003536 ORTHO05D004233 5.9e-14 80.5 52 76.9
Nn1g00740 Nelumbo nucifera HOM05D003536 ORTHO05D004233 5.9e-14 80.5 53 77.4
vmacro02467 Vaccinium macrocarpon HOM05D003536 ORTHO05D004233 5.9e-14 80.5 70 65.7
Aa31LG6G11010 Aethionema arabicum HOM05D003536 ORTHO05D004233 7.7e-14 80.1 52 76.9
Migut.L00733 Erythranthe guttata HOM05D003536 ORTHO05D004233 7.7e-14 80.1 52 76.9
Migut.L00928 Erythranthe guttata HOM05D003536 ORTHO05D004233 7.7e-14 80.1 52 76.9
Gohir.A12G052800 Gossypium hirsutum HOM05D003536 ORTHO05D004233 7.7e-14 80.1 52 78.8
Lj6g0024406 Lotus japonicus HOM05D003536 ORTHO05D004233 7.7e-14 80.1 52 73.1
Psat5g178600 Pisum sativum HOM05D003536 ORTHO05D004233 7.7e-14 80.1 73 63.0
TPR.G1154 Trifolium pratense HOM05D003536 ORTHO05D004233 7.7e-14 80.1 52 76.9
PSO339G1992 Papaver somniferum HOM05D003536 ORTHO05D004233 1.0e-13 79.7 52 76.9
PSO648G0105 Papaver somniferum HOM05D003536 ORTHO05D004233 1.0e-13 79.7 52 76.9
Hund02378 Selenicereus undatus HOM05D003536 ORTHO05D004233 1.0e-13 79.7 53 73.6
TAR629G2543 Trochodendron aralioides HOM05D003536 ORTHO05D004233 1.0e-13 79.7 52 76.9
arahy.Tifrunner.gnm1.ann1.3L4J3R Arachis hypogaea HOM05D003536 ORTHO05D004233 1.3e-13 79.3 72 63.9
arahy.Tifrunner.gnm1.ann1.NDA9EK Arachis hypogaea HOM05D003536 ORTHO05D004233 1.3e-13 79.3 72 63.9
Glyma.14G023200 Glycine max HOM05D003536 ORTHO05D004233 1.3e-13 79.3 72 63.9
Gohir.D05G160800 Gossypium hirsutum HOM05D003536 ORTHO05D004233 1.3e-13 79.3 72 62.5
Phvul.006G044400 Phaseolus vulgaris HOM05D003536 ORTHO05D004233 1.7e-13 79.0 52 75.0
Potri.004G050800 Populus trichocarpa HOM05D003536 ORTHO05D004233 1.7e-13 79.0 52 75.0
GSVIVG01038187001 Vitis vinifera HOM05D003536 ORTHO05D004233 1.7e-13 79.0 72 63.9
Aqoxy6G01555 Aquilegia oxysepala HOM05D003536 ORTHO05D004233 2.2e-13 78.6 52 75.0
Potri.011G059700 Populus trichocarpa HOM05D003536 ORTHO05D004233 2.2e-13 78.6 52 73.1
Gorai.009G166000 Gossypium raimondii HOM05D003536 ORTHO05D004233 2.9e-13 78.2 72 62.5
LjContig00272g0022132 Lotus japonicus HOM05D003536 ORTHO05D004233 2.9e-13 78.2 52 73.1
Psat2g011920 Pisum sativum HOM05D003536 ORTHO05D004233 2.9e-13 78.2 52 75.0
Glyma.02G291600 Glycine max HOM05D003536 ORTHO05D004233 3.8e-13 77.8 72 62.5
Lalb_Chr04g0248391 Lupinus albus HOM05D003536 ORTHO05D004233 3.8e-13 77.8 72 59.7
Nn6g33747 Nelumbo nucifera HOM05D003536 ORTHO05D004233 3.8e-13 77.8 72 62.5
Phvul.008G267900 Phaseolus vulgaris HOM05D003536 ORTHO05D004233 3.8e-13 77.8 72 59.7
Glyma.08G316900 Glycine max HOM05D003536 ORTHO05D004233 6.5e-13 77.0 72 61.1
Glyma.18G096200 Glycine max HOM05D003536 ORTHO05D004233 6.5e-13 77.0 72 61.1
Migut.H00835 Erythranthe guttata HOM05D003536 ORTHO05D004233 8.5e-13 76.6 52 75.0
HPP92_012149 Vanilla planifolia HOM05D003536 ORTHO05D004233 8.5e-13 76.6 52 71.2
CDE04G1024 Ceratophyllum demersum HOM05D003536 ORTHO05D004233 1.1e-12 76.3 52 71.2
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 1.1e-12 76.3 52 71.2
Gohir.A11G169750 Gossypium hirsutum HOM05D003536 ORTHO05D004233 1.1e-12 76.3 74 62.2
Os01g0963300 Oryza sativa ssp. japonica HOM05D003536 ORTHO05D004233 1.1e-12 76.3 52 73.1
VMungo0540G1494 Vigna mungo HOM05D003536 ORTHO05D004233 1.1e-12 76.3 73 60.3
Zm00001eb140280 Zea mays HOM05D003536 ORTHO05D004233 1.1e-12 76.3 52 73.1
Zm00001eb400730 Zea mays HOM05D003536 ORTHO05D004233 1.1e-12 76.3 52 73.1
Lalb_Chr15g0081231 Lupinus albus HOM05D003536 ORTHO05D004233 3.2e-12 74.7 72 58.3
Lalb_Chr15g0081241 Lupinus albus HOM05D003536 ORTHO05D004233 3.2e-12 74.7 72 58.3
Lalb_Chr15g0081251 Lupinus albus HOM05D003536 ORTHO05D004233 3.2e-12 74.7 72 58.3
Os11g0168100 Oryza sativa ssp. japonica HOM05D003536 ORTHO05D004233 4.2e-12 74.3 71 57.7
MBI05_g13422_MAGBIO Magnolia biondii HOM05D003536 ORTHO05D004233 9.4e-12 73.2 52 69.2
AagrBONN_evm.TU.Sc2ySwM_344.813 Anthoceros agrestis HOM05D003536 ORTHO05D004233 1.2e-11 72.8 52 65.4
SEGI_08171 Sequoiadendron giganteum HOM05D003536 ORTHO05D004233 1.2e-11 72.8 52 65.4
Gohir.A07G160875 Gossypium hirsutum HOM05D003536 ORTHO05D004233 1.6e-11 72.4 71 59.2
SMO337G0082 Selaginella moellendorffii HOM05D003536 ORTHO05D004233 2.1e-11 72.0 51 64.7
ATR0681G197 Amborella trichopoda HOM05D003536 ORTHO05D004233 2.7e-11 71.6 72 52.8
ClCG06G000520 Citrullus lanatus HOM05D003536 ORTHO05D004233 1.4e-10 69.3 46 76.1
TAR375G0806 Trochodendron aralioides HOM05D003536 ORTHO05D004233 3.0e-10 68.2 46 73.9
Pp3c17_23220 Physcomitrium patens HOM05D003536 ORTHO05D004233 6.7e-10 67.0 52 59.6
AagrBONN_evm.TU.Sc2ySwM_228.4577 Anthoceros agrestis HOM05D006544 ORTHO05D008757 1.1e-09 66.2 52 57.7
Ca_06324_v3 Cicer arietinum L. HOM05D003536 ORTHO05D004233 1.1e-09 66.2 44 75.0
vmacro15697 Vaccinium macrocarpon HOM05D003536 ORTHO05D004233 4.8e-08 60.8 37 83.8
Mapoly0140s0004 Marchantia polymorpha HOM05D003536 ORTHO05D004233 8.2e-08 60.1 57 49.1
SMO144G0089 Selaginella moellendorffii HOM05D003536 ORTHO05D004233 4.1e-07 57.8 52 50.0
C03p75320 Brassica napus HOM05D003536 ORTHO05D004233 1.5e-06 55.8 52 63.5
Mapoly0079s0013 Marchantia polymorpha HOM05D003536 ORTHO05D004233 2.0e-06 55.5 52 44.2


User provided reference genes

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