Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0014666g0090 Nicotiana tabacum HOM05D000540 ORTHO05D008899 8.6e-44 179.9 87 100.0
CAN.G1109.8 Capsicum annuum HOM05D000540 ORTHO05D008899 7.5e-40 166.8 94 88.3
CAN.G114.6 Capsicum annuum HOM05D000540 ORTHO05D008899 7.5e-40 166.8 94 88.3
CAN.G781.25 Capsicum annuum HOM05D000540 ORTHO05D008899 7.5e-40 166.8 94 88.3
MELO3C028092.2 Cucumis melo HOM05D000540 ORTHO05D008899 9.8e-40 166.4 94 88.3
LjContig00489g0018536 Lotus japonicus HOM05D000540 ORTHO05D008899 9.8e-40 166.4 94 88.3
Sed0004093 Sechium edule HOM05D000540 ORTHO05D008899 9.8e-40 166.4 94 88.3
Sed0008426 Sechium edule HOM05D000540 ORTHO05D008899 9.8e-40 166.4 94 88.3
Sed0015411 Sechium edule HOM05D000540 ORTHO05D008899 9.8e-40 166.4 94 88.3
Sed0019752 Sechium edule HOM05D000540 ORTHO05D008899 9.8e-40 166.4 94 88.3
Sed0026411 Sechium edule HOM05D000540 ORTHO05D008899 9.8e-40 166.4 94 88.3
SalBow1G0808 Salvia bowleyana HOM05D000540 ORTHO05D008899 1.7e-39 165.6 94 87.2
SalBow1G3106 Salvia bowleyana HOM05D000540 ORTHO05D008899 1.7e-39 165.6 94 87.2
Sed0007321 Sechium edule HOM05D000540 ORTHO05D008899 2.9e-39 164.9 94 87.2
Nn020s41485 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.7e-39 164.5 94 87.2
Nn5g27213 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.7e-39 164.5 94 87.2
RcHm_v2.0_CPg0502591 Rosa chinensis HOM05D000540 ORTHO05D008899 3.7e-39 164.5 94 87.2
DCAR_032528 Daucus carota HOM05D000540 ORTHO05D008899 8.3e-39 163.3 94 87.2
DCAR_032548 Daucus carota HOM05D000540 ORTHO05D008899 8.3e-39 163.3 94 87.2
CsaV3_UNG209010 Cucumis sativus L. HOM05D000540 ORTHO05D008899 1.1e-38 162.9 93 87.1
Nn1g08201 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.4e-38 162.5 94 86.2
Peaxi162Scf00211g00237 Petunia axillaris HOM05D000540 ORTHO05D008899 1.9e-38 162.2 94 87.2
PGR111G0050 Punica granatum HOM05D000540 ORTHO05D008899 2.4e-38 161.8 94 86.2
PGR111G0124 Punica granatum HOM05D000540 ORTHO05D008899 2.4e-38 161.8 94 86.2
AL2G20490 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 4.1e-38 161.0 94 85.1
AL4G23550 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 4.1e-38 161.0 94 85.1
ATCG00840 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 4.1e-38 161.0 94 85.1
ATCG01300 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 4.1e-38 161.0 94 85.1
CARHR282300 Cardamine hirsuta HOM05D000540 ORTHO05D008899 4.1e-38 161.0 94 85.1
CARHR282570 Cardamine hirsuta HOM05D000540 ORTHO05D008899 4.1e-38 161.0 94 85.1
AL2G21780 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 1.6e-37 159.1 94 84.0
HanXRQChr00c0165g0572201 Helianthus annuus HOM05D000540 ORTHO05D008899 1.6e-37 159.1 94 85.1
HanXRQChr00c0368g0574201 Helianthus annuus HOM05D000540 ORTHO05D008899 1.6e-37 159.1 94 85.1
HanXRQChr00c0496g0575201 Helianthus annuus HOM05D000540 ORTHO05D008899 1.6e-37 159.1 94 85.1
HanXRQChr00c0572g0575951 Helianthus annuus HOM05D000540 ORTHO05D008899 1.6e-37 159.1 94 85.1
HanXRQChr00c0585g0576271 Helianthus annuus HOM05D000540 ORTHO05D008899 1.6e-37 159.1 94 85.1
HanXRQChr05g0152521 Helianthus annuus HOM05D000540 ORTHO05D008899 1.6e-37 159.1 94 85.1
HanXRQChr10g0284441 Helianthus annuus HOM05D000540 ORTHO05D008899 1.6e-37 159.1 94 85.1
HanXRQChr10g0318001 Helianthus annuus HOM05D000540 ORTHO05D008899 1.6e-37 159.1 94 85.1
HanXRQChr11g0321161 Helianthus annuus HOM05D000540 ORTHO05D008899 1.6e-37 159.1 94 85.1
HanXRQChr13g0416611 Helianthus annuus HOM05D000540 ORTHO05D008899 1.6e-37 159.1 94 85.1
HanXRQChr15g0488331 Helianthus annuus HOM05D000540 ORTHO05D008899 1.6e-37 159.1 94 85.1
GSVIVG01023980001 Vitis vinifera HOM05D000540 ORTHO05D008899 1.6e-37 159.1 94 85.1
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 2.0e-37 158.7 92 87.0
RcHm_v2.0_Chr2g0118491 Rosa chinensis HOM05D000540 ORTHO05D008899 2.7e-37 158.3 94 85.1
PSO548G0098 Papaver somniferum HOM05D000540 ORTHO05D008899 6.0e-37 157.1 94 85.1
PSO548G0119 Papaver somniferum HOM05D000540 ORTHO05D008899 6.0e-37 157.1 94 85.1
Potri.005G154350 Populus trichocarpa HOM05D000540 ORTHO05D008899 7.8e-37 156.8 94 85.1
Potri.013G138612 Populus trichocarpa HOM05D000540 ORTHO05D008899 7.8e-37 156.8 94 85.1
Gohir.A04G039075 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.0e-36 156.4 94 84.0
Lalb_Chr07g0191961 Lupinus albus HOM05D000540 ORTHO05D008899 1.0e-36 156.4 94 85.1
Nitab4.5_0020349g0050 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.7e-36 155.6 92 85.9
Gohir.D01G102216 Gossypium hirsutum HOM05D000540 ORTHO05D008899 3.0e-36 154.8 94 83.0
LjContig00318g0005310 Lotus japonicus HOM05D000540 ORTHO05D008899 3.9e-36 154.5 94 83.0
LjContig00318g0024355 Lotus japonicus HOM05D000540 ORTHO05D008899 3.9e-36 154.5 94 83.0
LjContig00319g0005990 Lotus japonicus HOM05D000540 ORTHO05D008899 3.9e-36 154.5 94 83.0
LjContig00319g0017169 Lotus japonicus HOM05D000540 ORTHO05D008899 3.9e-36 154.5 94 83.0
Gohir.A10G084500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 8.6e-36 153.3 94 81.9
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.1e-35 152.9 90 83.3
Lj4g0015929 Lotus japonicus HOM05D000540 ORTHO05D008899 1.9e-35 152.1 94 81.9
Sed0012077 Sechium edule HOM05D000540 ORTHO05D008899 1.9e-35 152.1 87 88.5
Gohir.D06G104900 Gossypium hirsutum HOM05D000540 ORTHO05D008899 4.3e-35 151.0 94 80.9
Gohir.1Z050392 Gossypium hirsutum HOM05D000540 ORTHO05D008899 7.3e-35 150.2 94 81.9
Nn4g25233 Nelumbo nucifera HOM05D000540 ORTHO05D008899 7.3e-35 150.2 94 80.9
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 7.3e-35 150.2 92 82.6
Gorai.007G229500 Gossypium raimondii HOM05D000540 ORTHO05D008899 6.2e-34 147.1 94 79.8
Gohir.D04G085766 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.5e-32 142.5 94 77.7
Peaxi162Scf00483g00319 Petunia axillaris HOM05D000540 ORTHO05D008899 1.5e-32 142.5 81 87.7
CAN.G1468.2 Capsicum annuum HOM05D000540 ORTHO05D008899 2.6e-32 141.7 94 77.7
Gohir.D11G213500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.6e-32 141.7 94 77.7
Migut.D01325 Erythranthe guttata HOM05D000540 ORTHO05D000681 7.5e-32 140.2 82 84.1
BolSC56t61242H Brassica oleracea HOM05D000540 ORTHO05D008899 1.7e-31 139.0 84 79.8
Gohir.D06G105280 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.2e-31 138.7 94 76.6
HanXRQChr09g0256691 Helianthus annuus HOM05D000540 ORTHO05D008899 2.2e-31 138.7 83 83.1
CAN.G895.34 Capsicum annuum HOM05D000540 ORTHO05D008899 4.9e-31 137.5 91 79.1
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.1e-30 136.3 79 86.1
HanXRQChr11g0352351 Helianthus annuus HOM05D000540 ORTHO05D000681 1.4e-30 136.0 82 82.9
HanXRQChr00c0349g0573971 Helianthus annuus HOM05D000540 ORTHO05D000681 4.1e-30 134.4 83 80.7
Medtr0002s0350 Medicago truncatula HOM05D000540 ORTHO05D008899 7.0e-30 133.7 82 79.3
Gohir.A12G089000 Gossypium hirsutum HOM05D000540 ORTHO05D008899 9.2e-30 133.3 81 82.7
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 1.2e-29 132.9 84 77.4
AL1G45030 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 2.7e-29 131.7 77 83.1
BolC2t10582H Brassica oleracea HOM05D000540 ORTHO05D008899 3.5e-29 131.3 79 79.7
CAN.G895.33 Capsicum annuum HOM05D000540 ORTHO05D008899 6.0e-29 130.6 94 75.5
Lalb_Chr25g0281971 Lupinus albus HOM05D000540 ORTHO05D008899 1.5e-27 125.9 94 69.1
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 5.6e-27 124.0 79 75.9
HanXRQChr13g0413481 Helianthus annuus HOM05D000540 ORTHO05D008899 1.1e-25 119.8 74 81.1
Medtr4g047920 Medicago truncatula HOM05D000540 ORTHO05D000681 5.2e-25 117.5 79 74.7
ClCG00G001570 Citrullus lanatus HOM05D000540 ORTHO05D008899 6.8e-25 117.1 72 79.2
HanXRQChr00c0451g0574831 Helianthus annuus HOM05D000540 ORTHO05D008899 8.9e-25 116.7 72 80.6
Ciclev10010272m.g Citrus clementina HOM05D000540 ORTHO05D008899 1.5e-24 115.9 88 72.7
Medtr4g051430 Medicago truncatula HOM05D000540 ORTHO05D000681 1.5e-24 115.9 79 74.7
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 2.0e-24 115.5 82 72.0
Lsat_1_v5_gn_5_27661 Lactuca sativa HOM05D000540 ORTHO05D008899 1.3e-23 112.8 69 81.2
Lsat_1_v5_gn_7_82661 Lactuca sativa HOM05D000540 ORTHO05D008899 1.3e-23 112.8 69 81.2
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.3e-23 112.8 72 77.8
GSVIVG01023244001 Vitis vinifera HOM05D000540 ORTHO05D008899 2.4e-22 108.6 86 62.8
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 7.1e-22 107.1 67 80.6
ClCG10G020130 Citrullus lanatus HOM05D000540 ORTHO05D008899 9.2e-22 106.7 94 61.7
Nn021s41514 Nelumbo nucifera HOM05D000540 ORTHO05D008899 6.6e-20 100.5 75 69.3
Nn145s44091 Nelumbo nucifera HOM05D000540 ORTHO05D008899 6.6e-20 100.5 75 69.3
Nn3g16152 Nelumbo nucifera HOM05D000540 ORTHO05D008899 6.6e-20 100.5 75 69.3
GSVIVG01010311001 Vitis vinifera HOM05D000540 ORTHO05D008899 6.6e-20 100.5 63 81.0
Peaxi162Scf00525g00033 Petunia axillaris HOM05D000540 ORTHO05D008899 8.6e-20 100.1 60 83.3
Potri.011G074401 Populus trichocarpa HOM05D000540 ORTHO05D000681 5.6e-19 97.4 66 77.3
Migut.D01406 Erythranthe guttata HOM05D000540 ORTHO05D000681 7.3e-19 97.1 73 69.9
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.6e-18 95.9 61 78.7
CSS0033691 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 8.1e-18 93.6 75 61.3
HanXRQChr03g0073071 Helianthus annuus HOM05D000540 ORTHO05D008899 1.8e-17 92.4 60 76.7
Sed0017282 Sechium edule HOM05D000540 ORTHO05D000681 3.1e-17 91.7 44 93.2
CiPaw.06G075700 Carya illinoinensis HOM05D000540 ORTHO05D008899 1.2e-16 89.7 63 73.0
Sed0006593 Sechium edule HOM05D000540 ORTHO05D000681 1.5e-16 89.4 44 90.9
HanXRQChr00c0126g0571811 Helianthus annuus HOM05D000540 ORTHO05D000681 2.6e-16 88.6 83 59.0
CSS0035327 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 5.8e-16 87.4 53 79.2
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 1.3e-15 86.3 76 64.5
Gohir.D11G067360 Gossypium hirsutum HOM05D000540 ORTHO05D000681 2.9e-15 85.1 43 88.4
TAR636G2296 Trochodendron aralioides HOM05D000216 ORTHO05D008899 2.9e-15 85.1 45 91.1
Nitab4.5_0004376g0180 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.9e-14 82.4 59 71.2
BraSC103t45440Z Brassica rapa HOM05D000540 ORTHO05D008899 3.2e-14 81.6 43 90.7
Nn1g04854 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.2e-14 81.6 58 74.1
Nn1g08182 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.2e-14 81.6 42 92.9
HanXRQChr00c0512g0575371 Helianthus annuus HOM05D000540 ORTHO05D008899 3.5e-13 78.2 61 70.5
HanXRQChr07g0194921 Helianthus annuus HOM05D000540 ORTHO05D008899 1.0e-12 76.6 42 83.3
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.7e-12 75.9 40 87.5
Lsat_1_v5_gn_3_85660 Lactuca sativa HOM05D000445 ORTHO05D008899 5.1e-12 74.3 52 69.2
EL10Ac9g22727 Beta vulgaris HOM05D000540 ORTHO05D008899 8.7e-12 73.6 44 81.8
Lalb_Chr13g0292941 Lupinus albus HOM05D000540 ORTHO05D008899 1.9e-11 72.4 56 69.6
arahy.Tifrunner.gnm1.ann1.LF45NH Arachis hypogaea HOM05D000540 ORTHO05D000681 9.6e-11 70.1 77 54.5
CAN.G1690.3 Capsicum annuum HOM05D000540 ORTHO05D000681 1.3e-10 69.7 32 96.9
Oeu062848.1 Olea europaea HOM05D000540 ORTHO05D008899 2.8e-10 68.6 77 48.1
HanXRQChr00c0533g0575581 Helianthus annuus HOM05D000540 ORTHO05D008899 6.2e-10 67.4 35 94.3
Migut.K00974 Erythranthe guttata HOM05D000540 ORTHO05D000681 1.8e-09 65.9 30 96.7
vmacro07326 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 6.9e-09 63.9 61 59.0
ClCG00G001500 Citrullus lanatus HOM05D000540 ORTHO05D008899 1.5e-08 62.8 32 87.5
Nn4g25231 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.4e-06 56.2 37 70.3
Medtr2g098600 Medicago truncatula HOM05D000540 ORTHO05D008899 7.1e-06 53.9 44 63.6


User provided reference genes

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