Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0011320g0020 Nicotiana tabacum HOM05D017013 ORTHO05D020321 1.1e-60 236.9 166 100.0
Nitab4.5_0001128g0060 Nicotiana tabacum HOM05D017013 ORTHO05D020321 4.0e-42 175.3 166 78.3
Peaxi162Scf00274g00413 Petunia axillaris HOM05D017013 ORTHO05D020321 3.0e-21 105.9 106 58.5
Peaxi162Scf00013g00413 Petunia axillaris HOM05D023403 ORTHO05D022180 7.2e-15 84.7 80 58.8
CAN.G587.5 Capsicum annuum HOM05D023403 ORTHO05D022180 9.4e-15 84.3 96 50.0
CAN.G837.28 Capsicum annuum HOM05D017013 ORTHO05D020321 1.2e-14 84.0 102 52.0
Nitab4.5_0007189g0050 Nicotiana tabacum HOM05D017013 ORTHO05D022180 1.6e-14 83.6 123 43.9
PGSC0003DMG400019527 Solanum tuberosum HOM05D017013 ORTHO05D020321 6.1e-14 81.6 110 46.4
PSO013G0121 Papaver somniferum HOM05D002107 ORTHO05D002067 1.1e-12 77.4 124 39.5
PSO170G1488 Papaver somniferum HOM05D002107 ORTHO05D002067 9.7e-12 74.3 78 51.3
PSO832G2801 Papaver somniferum HOM05D002107 ORTHO05D002067 1.7e-11 73.6 78 51.3
TAR374G0829 Trochodendron aralioides HOM05D002107 ORTHO05D002067 2.8e-11 72.8 78 50.0
GSVIVG01011435001 Vitis vinifera HOM05D002107 ORTHO05D002067 1.8e-10 70.1 118 41.5
Cpa.g.sc14.95 Carica papaya HOM05D002107 ORTHO05D002067 4.1e-10 68.9 76 52.6
CiPaw.04G016200 Carya illinoinensis HOM05D002107 ORTHO05D002067 4.1e-10 68.9 96 42.7
Glyma.09G236800 Glycine max HOM05D002107 ORTHO05D002067 4.1e-10 68.9 82 43.9
PGSC0003DMG400017084 Solanum tuberosum HOM05D023403 ORTHO05D022180 1.2e-09 67.4 68 54.4
TWI75G1605 Tripterygium wilfordii HOM05D002107 ORTHO05D002067 1.2e-09 67.4 78 50.0
Glyma.18G260700 Glycine max HOM05D002107 ORTHO05D002067 1.5e-09 67.0 82 42.7
MD09G1052700 Malus domestica HOM05D002107 ORTHO05D002067 1.5e-09 67.0 75 48.0
THA.LOC104805475 Tarenaya hassleriana HOM05D002107 ORTHO05D002067 1.5e-09 67.0 92 48.9
QL02p082514 Quercus lobata HOM05D002107 ORTHO05D002067 2.0e-09 66.6 78 48.7
CSS0013301 Camellia sinensis var. sinensis HOM05D002107 ORTHO05D002067 2.6e-09 66.2 89 46.1
Haze_14513 Corylus avellana HOM05D002107 ORTHO05D002067 2.6e-09 66.2 99 41.4
Ciclev10012752m.g Citrus clementina HOM05D002107 ORTHO05D002067 3.4e-09 65.9 98 43.9
Medtr4g127560 Medicago truncatula HOM05D002107 ORTHO05D002067 3.4e-09 65.9 96 39.6
TAR629G1678 Trochodendron aralioides HOM05D002107 ORTHO05D002067 3.4e-09 65.9 96 44.8
Ca_02904_v3 Cicer arietinum L. HOM05D002107 ORTHO05D002067 4.5e-09 65.5 75 42.7
VMungo1383G0436 Vigna mungo HOM05D002107 ORTHO05D002067 4.5e-09 65.5 81 43.2
CSS0029813 Camellia sinensis var. sinensis HOM05D002107 ORTHO05D002067 5.9e-09 65.1 113 38.9
CSS0037782 Camellia sinensis var. sinensis HOM05D002107 ORTHO05D002067 7.7e-09 64.7 89 46.1
Hma1.2p1_0409F.1_g146870 Hydrangea macrophylla HOM05D002107 ORTHO05D002067 7.7e-09 64.7 113 38.1
TPR.G33550 Trifolium pratense HOM05D002107 ORTHO05D002067 7.7e-09 64.7 75 44.0
Cfa007573 Carpinus fangiana HOM05D002107 ORTHO05D002067 1.0e-08 64.3 78 44.9
Nn4g23202 Nelumbo nucifera HOM05D002107 ORTHO05D002067 1.0e-08 64.3 111 36.9
TAR622G0103 Trochodendron aralioides HOM05D000715 ORTHO05D000024 1.3e-08 63.9 104 42.3
AL5G18860 Arabidopsis lyrata HOM05D002107 ORTHO05D002067 1.7e-08 63.5 84 47.6
Dinv11518 Davidia involucrata HOM05D002107 ORTHO05D002067 1.7e-08 63.5 85 43.5
Thhalv10028351m.g Eutrema salsugineum HOM05D002107 ORTHO05D002067 1.7e-08 63.5 109 38.5
FvH4_6g48240 Fragaria vesca HOM05D002107 ORTHO05D002067 1.7e-08 63.5 116 37.9
FAN02G0855 Fragaria x ananassa HOM05D002107 ORTHO05D002067 1.7e-08 63.5 116 37.9
FAN05G0674 Fragaria x ananassa HOM05D002107 ORTHO05D002067 1.7e-08 63.5 116 37.9
FAN05G5651 Fragaria x ananassa HOM05D002107 ORTHO05D002067 1.7e-08 63.5 116 37.9
FAN14G4105 Fragaria x ananassa HOM05D002107 ORTHO05D002067 1.7e-08 63.5 116 37.9
Manes.01G092300 Manihot esculenta HOM05D002107 ORTHO05D002067 1.7e-08 63.5 98 40.8
Phvul.008G037300 Phaseolus vulgaris HOM05D002107 ORTHO05D002067 1.7e-08 63.5 80 42.5
THA.LOC104823116 Tarenaya hassleriana HOM05D002107 ORTHO05D002067 1.7e-08 63.5 92 42.4
TWI32G0278 Tripterygium wilfordii HOM05D002107 ORTHO05D002067 1.7e-08 63.5 101 38.6
FAN09G2398 Fragaria x ananassa HOM05D002107 ORTHO05D002067 2.2e-08 63.2 100 40.0
Lj4P111T48 Lonicera japonica HOM05D002107 ORTHO05D002067 2.2e-08 63.2 63 46.0
Lju41C10T7 Lonicera japonica HOM05D002107 ORTHO05D002067 2.2e-08 63.2 63 46.0
MD00G1125300 Malus domestica HOM05D002107 ORTHO05D002067 2.2e-08 63.2 109 37.6
Psat0ss2585g0440 Pisum sativum HOM05D002107 ORTHO05D002067 2.2e-08 63.2 109 33.9
Sabra17G0074700 Salix brachista HOM05D002107 ORTHO05D002067 2.2e-08 63.2 75 44.0
Sp2g17630 Schrenkiella parvula HOM05D002107 ORTHO05D002067 2.2e-08 63.2 99 40.4
Lj1g0018487 Lotus japonicus HOM05D002107 ORTHO05D002067 2.9e-08 62.8 110 37.3
Prupe.3G266000 Prunus persica HOM05D002107 ORTHO05D002067 2.9e-08 62.8 111 37.8
Rhsim10G0037300 Rhododendron simsii HOM05D002107 ORTHO05D002067 2.9e-08 62.8 64 48.4
Psat3g200360 Pisum sativum HOM05D002107 ORTHO05D002067 3.8e-08 62.4 62 50.0
Prupe.1G276100 Prunus persica HOM05D002107 ORTHO05D002067 5.0e-08 62.0 77 48.1
Actinidia26225 Actinidia chinensis HOM05D002107 ORTHO05D002067 6.5e-08 61.6 79 44.3
CANSAT64G0045 Cannabis sativa HOM05D002107 ORTHO05D002067 6.5e-08 61.6 74 45.9
Gohir.A05G366900 Gossypium hirsutum HOM05D002107 ORTHO05D002067 6.5e-08 61.6 107 37.4
Gohir.D04G048200 Gossypium hirsutum HOM05D002107 ORTHO05D002067 6.5e-08 61.6 107 36.4
CARHR152090 Cardamine hirsuta HOM05D002107 ORTHO05D002067 8.5e-08 61.2 75 48.0
Medtr5g025690 Medicago truncatula HOM05D002107 ORTHO05D002067 8.5e-08 61.2 75 44.0
Potri.004G122900 Populus trichocarpa HOM05D002107 ORTHO05D002067 8.5e-08 61.2 116 37.9
Potri.017G084800 Populus trichocarpa HOM05D002107 ORTHO05D002067 8.5e-08 61.2 101 37.6
Solyc06g069740.1 Solanum lycopersicum HOM05D023403 ORTHO05D022180 8.5e-08 61.2 99 42.4
TWI18G1108 Tripterygium wilfordii HOM05D002107 ORTHO05D002067 8.5e-08 61.2 99 45.5
Aa31LG9G16440 Aethionema arabicum HOM05D002107 ORTHO05D002067 1.1e-07 60.8 96 41.7
EL10Ac2g02996 Beta vulgaris HOM05D002107 ORTHO05D002067 1.1e-07 60.8 106 38.7
Manes.02G047200 Manihot esculenta HOM05D002107 ORTHO05D002067 1.1e-07 60.8 99 38.4
QL03p068673 Quercus lobata HOM05D002107 ORTHO05D002067 1.1e-07 60.8 76 43.4
Aqoxy3G03427 Aquilegia oxysepala HOM05D002107 ORTHO05D002067 1.4e-07 60.5 84 41.7
Atru.chr8.189 Acer truncatum HOM05D002107 ORTHO05D002067 1.9e-07 60.1 97 37.1
Cc04_g16480 Coffea canephora HOM05D002107 ORTHO05D002067 1.9e-07 60.1 78 43.6
Dinv38723 Davidia involucrata HOM05D002107 ORTHO05D002067 1.9e-07 60.1 105 41.0
Gohir.D04G047800 Gossypium hirsutum HOM05D002107 ORTHO05D002067 1.9e-07 60.1 107 36.4
Gorai.012G053200 Gossypium raimondii HOM05D002107 ORTHO05D002067 1.9e-07 60.1 107 36.4
Lj5C110T20 Lonicera japonica HOM05D002107 ORTHO05D002067 1.9e-07 60.1 61 44.3
MD13G1070500 Malus domestica HOM05D002107 ORTHO05D002067 1.9e-07 60.1 90 43.3
Manes.05G103201 Manihot esculenta HOM05D002107 ORTHO05D002067 1.9e-07 60.1 95 43.2
Nn3g17271 Nelumbo nucifera HOM05D002107 ORTHO05D002067 1.9e-07 60.1 101 42.6
Sopen06g027040 Solanum pennellii HOM05D023403 ORTHO05D022180 1.9e-07 60.1 99 41.4
Carub.0005s0759 Capsella rubella HOM05D002107 ORTHO05D002067 2.5e-07 59.7 72 43.1
Ca_21248_v3 Cicer arietinum L. HOM05D002107 ORTHO05D002067 2.5e-07 59.7 91 37.4
Lsat_1_v5_gn_2_87480 Lactuca sativa HOM05D002107 ORTHO05D002067 2.5e-07 59.7 101 33.7
Medtr7g011010 Medicago truncatula HOM05D002107 ORTHO05D002067 2.5e-07 59.7 90 41.1
Solyc03g115930.3 Solanum lycopersicum HOM05D017013 ORTHO05D020321 2.5e-07 59.7 111 36.0
Gohir.D04G191400 Gossypium hirsutum HOM05D002107 ORTHO05D002067 3.2e-07 59.3 76 43.4
vmacro17534 Vaccinium macrocarpon HOM05D002107 ORTHO05D002067 3.2e-07 59.3 124 33.9
C07p37910 Brassica napus HOM05D004915 ORTHO05D006048 4.2e-07 58.9 78 44.9
BolC7t44312H Brassica oleracea HOM05D004915 ORTHO05D006048 4.2e-07 58.9 78 44.9
Peaxi162Scf00451g00071 Petunia axillaris HOM05D002107 ORTHO05D002067 4.2e-07 58.9 85 40.0
CiPaw.12G012900 Carya illinoinensis HOM05D002107 ORTHO05D002067 5.5e-07 58.5 38 73.7
CDE02G3745 Ceratophyllum demersum HOM05D002107 ORTHO05D002067 5.5e-07 58.5 72 47.2
Dinv33764 Davidia involucrata HOM05D002107 ORTHO05D002067 5.5e-07 58.5 99 42.4
FvH4_4g31200 Fragaria vesca HOM05D002107 ORTHO05D002067 5.5e-07 58.5 78 46.2
FAN12G0510 Fragaria x ananassa HOM05D002107 ORTHO05D002067 5.5e-07 58.5 78 46.2
Gorai.012G053700 Gossypium raimondii HOM05D002107 ORTHO05D002067 5.5e-07 58.5 103 36.9
PGR044G2639 Punica granatum HOM05D002107 ORTHO05D002067 5.5e-07 58.5 37 67.6
HPP92_004332 Vanilla planifolia HOM05D002107 ORTHO05D002067 5.5e-07 58.5 116 34.5
Actinidia17555 Actinidia chinensis HOM05D002107 ORTHO05D002067 7.2e-07 58.2 77 45.5
QL10p017202 Quercus lobata HOM05D002107 ORTHO05D002067 7.2e-07 58.2 79 46.8
RcHm_v2.0_Chr2g0167751 Rosa chinensis HOM05D002107 ORTHO05D002067 7.2e-07 58.2 97 42.3
Actinidia38765 Actinidia chinensis HOM05D000556 ORTHO05D002067 9.4e-07 57.8 104 39.4
BcaC06g33662 Brassica carinata HOM05D004915 ORTHO05D006048 9.4e-07 57.8 87 39.1
Ciclev10024475m.g Citrus clementina HOM05D002107 ORTHO05D002067 9.4e-07 57.8 38 68.4
TPR.G5396 Trifolium pratense HOM05D002107 ORTHO05D002067 9.4e-07 57.8 113 31.9
CiPaw.11G045700 Carya illinoinensis HOM05D002107 ORTHO05D002067 1.2e-06 57.4 78 42.3
ClCG10G015230 Citrullus lanatus HOM05D002107 ORTHO05D002067 1.2e-06 57.4 94 41.5
Duzib084G0513 Durio zibethinus HOM05D002107 ORTHO05D002067 1.2e-06 57.4 33 75.8
Eucgr.K02484 Eucalyptus grandis HOM05D002107 ORTHO05D002067 1.6e-06 57.0 76 46.1
Gohir.A04G147000 Gossypium hirsutum HOM05D002107 ORTHO05D002067 1.6e-06 57.0 76 43.4
TWI34G1788 Tripterygium wilfordii HOM05D002107 ORTHO05D002067 1.6e-06 57.0 96 38.5
AT5G39670 Arabidopsis thaliana HOM05D002107 ORTHO05D002067 2.1e-06 56.6 77 42.9
Cc07_g03480 Coffea canephora HOM05D002107 ORTHO05D002067 2.1e-06 56.6 75 40.0
COL.COLO4_22951 Corchorus olitorius HOM05D002107 ORTHO05D002067 2.1e-06 56.6 38 65.8
Eucgr.K02482 Eucalyptus grandis HOM05D002107 ORTHO05D002067 2.1e-06 56.6 80 45.0
HanXRQChr07g0199331 Helianthus annuus HOM05D002107 ORTHO05D002067 2.1e-06 56.6 94 34.0
HanXRQChr14g0449811 Helianthus annuus HOM05D002107 ORTHO05D002067 2.1e-06 56.6 75 34.7
HanXRQChr15g0473221 Helianthus annuus HOM05D002107 ORTHO05D002067 2.1e-06 56.6 71 39.4
HanXRQChr17g0546001 Helianthus annuus HOM05D002107 ORTHO05D002067 2.1e-06 56.6 72 41.7
Sabra08G0065700 Salix brachista HOM05D002107 ORTHO05D002067 2.1e-06 56.6 74 43.2
ATR0564G478 Amborella trichopoda HOM05D002107 ORTHO05D002067 2.7e-06 56.2 95 44.2
BcaC08g44426 Brassica carinata HOM05D002107 ORTHO05D002067 2.7e-06 56.2 68 45.6
C06p18630 Brassica napus HOM05D002107 ORTHO05D002067 2.7e-06 56.2 68 45.6
BolC6t37076H Brassica oleracea HOM05D002107 ORTHO05D002067 2.7e-06 56.2 68 45.6
CARHR262620 Cardamine hirsuta HOM05D002107 ORTHO05D002067 2.7e-06 56.2 70 44.3
Hma1.2p1_0795F.1_g218960 Hydrangea macrophylla HOM05D002107 ORTHO05D002067 2.7e-06 56.2 62 50.0
Lsat_1_v5_gn_1_14060 Lactuca sativa HOM05D002107 ORTHO05D002067 2.7e-06 56.2 61 47.5
Manes.01G034900 Manihot esculenta HOM05D002107 ORTHO05D002067 2.7e-06 56.2 76 39.5
Ah.02g129610 Amaranthus hybridus HOM05D002107 ORTHO05D002067 3.6e-06 55.8 110 33.6
BraA02t08625Z Brassica rapa HOM05D002107 ORTHO05D002067 3.6e-06 55.8 78 42.3
Duzib187G0664 Durio zibethinus HOM05D002107 ORTHO05D002067 3.6e-06 55.8 92 40.2
FvH4_5g14810 Fragaria vesca HOM05D002107 ORTHO05D002067 3.6e-06 55.8 62 46.8
FAN18G3479 Fragaria x ananassa HOM05D002107 ORTHO05D002067 3.6e-06 55.8 62 46.8
Gohir.D12G180650 Gossypium hirsutum HOM05D002107 ORTHO05D002067 3.6e-06 55.8 41 61.0
Gorai.008G193900 Gossypium raimondii HOM05D002107 ORTHO05D002067 3.6e-06 55.8 41 61.0
AT3G29000 Arabidopsis thaliana HOM05D002107 ORTHO05D002067 4.7e-06 55.5 72 41.7
BcaC04g23853 Brassica carinata HOM05D002107 ORTHO05D002067 4.7e-06 55.5 78 43.6
A07p20070 Brassica napus HOM05D002107 ORTHO05D002067 4.7e-06 55.5 68 45.6
C09p04120 Brassica napus HOM05D002107 ORTHO05D002067 4.7e-06 55.5 78 43.6
BolC9t53342H Brassica oleracea HOM05D002107 ORTHO05D002067 4.7e-06 55.5 78 43.6
Eucgr.K02486 Eucalyptus grandis HOM05D002107 ORTHO05D002067 4.7e-06 55.5 72 45.8
Gohir.A12G178250 Gossypium hirsutum HOM05D002107 ORTHO05D002067 4.7e-06 55.5 41 61.0
Gorai.012G186800 Gossypium raimondii HOM05D002107 ORTHO05D002067 4.7e-06 55.5 76 42.1
Sopen03g034930 Solanum pennellii HOM05D017013 ORTHO05D020321 4.7e-06 55.5 111 34.2
A06p40200 Brassica napus HOM05D004915 ORTHO05D006048 6.1e-06 55.1 86 39.5
BraA06t26934Z Brassica rapa HOM05D004915 ORTHO05D006048 6.1e-06 55.1 86 39.5
BraA07t29706Z Brassica rapa HOM05D002107 ORTHO05D002067 6.1e-06 55.1 68 45.6
DCAR_005558 Daucus carota HOM05D002107 ORTHO05D002067 6.1e-06 55.1 71 42.3
DCAR_011089 Daucus carota HOM05D002107 ORTHO05D002067 6.1e-06 55.1 76 40.8
Gohir.D11G074300 Gossypium hirsutum HOM05D002107 ORTHO05D002067 6.1e-06 55.1 68 45.6
MBI05_g10775_MAGBIO Magnolia biondii HOM05D002107 ORTHO05D002067 6.1e-06 55.1 72 44.4
SalBow1G3065 Salvia bowleyana HOM05D002107 ORTHO05D002067 6.1e-06 55.1 40 60.0
Atru.chr11.1768 Acer truncatum HOM05D002107 ORTHO05D002067 7.9e-06 54.7 75 45.3
Actinidia38783 Actinidia chinensis HOM05D002107 ORTHO05D002067 7.9e-06 54.7 104 38.5
AL7G50640 Arabidopsis lyrata HOM05D002107 ORTHO05D002067 7.9e-06 54.7 97 37.1
MSTRG.3332 Avicennia marina HOM05D002107 ORTHO05D002067 7.9e-06 54.7 118 31.4
A09p03890 Brassica napus HOM05D002107 ORTHO05D002067 7.9e-06 54.7 38 63.2
BraA09t36026Z Brassica rapa HOM05D002107 ORTHO05D002067 7.9e-06 54.7 38 63.2
Migut.E00084 Erythranthe guttata HOM05D002107 ORTHO05D002067 7.9e-06 54.7 38 57.9
FAN17G0930 Fragaria x ananassa HOM05D002107 ORTHO05D002067 7.9e-06 54.7 78 44.9
Gohir.A09G014700 Gossypium hirsutum HOM05D002107 ORTHO05D002067 7.9e-06 54.7 90 40.0
QL10p017195 Quercus lobata HOM05D002107 ORTHO05D002067 7.9e-06 54.7 125 37.6


User provided reference genes

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