Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0011268g0020 Nicotiana tabacum HOM05D001100 ORTHO05D007514 7.2e-53 210.3 105 100.0
Nitab4.5_0001967g0040 Nicotiana tabacum HOM05D001100 ORTHO05D007514 7.9e-44 180.3 96 94.8
CAN.G424.28 Capsicum annuum HOM05D001100 ORTHO05D007514 3.8e-38 161.4 100 84.0
Solyc02g079270.4 Solanum lycopersicum HOM05D001100 ORTHO05D007514 2.5e-37 158.7 100 82.0
Sopen02g024090 Solanum pennellii HOM05D001100 ORTHO05D007514 9.4e-37 156.8 100 81.0
Solyc02g079250.4 Solanum lycopersicum HOM05D001100 ORTHO05D007514 2.4e-32 142.1 100 76.0
Sopen02g024070 Solanum pennellii HOM05D001100 ORTHO05D007514 2.4e-32 142.1 100 76.0
Nitab4.5_0000649g0030 Nicotiana tabacum HOM05D001100 ORTHO05D007514 3.1e-32 141.7 100 76.0
Nitab4.5_0011268g0010 Nicotiana tabacum HOM05D001100 ORTHO05D007514 4.1e-32 141.4 100 77.0
CAN.G424.26 Capsicum annuum HOM05D001100 ORTHO05D007514 2.0e-31 139.0 100 74.0
SalBow8G3393 Salvia bowleyana HOM05D001100 ORTHO05D007514 6.1e-28 127.5 101 64.4
Cfa000342 Carpinus fangiana HOM05D001100 ORTHO05D007514 4.0e-27 124.8 103 67.0
Cc02_g12340 Coffea canephora HOM05D001100 ORTHO05D007514 5.2e-27 124.4 106 67.0
CANSAT56G3927 Cannabis sativa HOM05D001100 ORTHO05D007514 1.1e-26 123.2 102 68.6
SGA_v2.0_scaffold7G03928 Striga asiatica HOM05D001100 ORTHO05D007514 1.5e-26 122.9 80 73.8
Actinidia05567 Actinidia chinensis HOM05D001100 ORTHO05D007514 2.0e-26 122.5 108 64.8
MSTRG.15941 Avicennia marina HOM05D001100 ORTHO05D007514 3.3e-26 121.7 86 69.8
CSS0027676 Camellia sinensis var. sinensis HOM05D001100 ORTHO05D007514 3.3e-26 121.7 108 63.9
Atru.chr10.2023 Acer truncatum HOM05D001100 ORTHO05D007514 4.4e-26 121.3 79 81.0
Thecc.06G201200 Theobroma cacao HOM05D001100 ORTHO05D007514 4.4e-26 121.3 99 65.7
Gohir.A05G166200 Gossypium hirsutum HOM05D001100 ORTHO05D007514 7.5e-26 120.6 99 65.7
Gorai.009G174400 Gossypium raimondii HOM05D001100 ORTHO05D007514 7.5e-26 120.6 99 65.7
Peaxi162Scf00779g00412 Petunia axillaris HOM05D001100 ORTHO05D007514 9.7e-26 120.2 97 72.2
TAR629G1200 Trochodendron aralioides HOM05D001100 ORTHO05D007514 1.7e-25 119.4 101 63.4
Sabra04G0019000 Salix brachista HOM05D001100 ORTHO05D007514 6.3e-25 117.5 84 70.2
Dinv18985 Davidia involucrata HOM05D001100 ORTHO05D007514 8.2e-25 117.1 112 64.3
Haze_06589 Corylus avellana HOM05D001100 ORTHO05D007514 1.4e-24 116.3 100 65.0
Migut.M01223 Erythranthe guttata HOM05D001100 ORTHO05D007514 1.4e-24 116.3 95 64.2
Gohir.D05G169200 Gossypium hirsutum HOM05D001100 ORTHO05D007514 1.4e-24 116.3 99 63.6
Oeu038207.1 Olea europaea HOM05D001100 ORTHO05D007514 1.8e-24 115.9 108 59.3
QL05p081056 Quercus lobata HOM05D001100 ORTHO05D007514 2.4e-24 115.5 65 86.2
GSVIVG01003661001 Vitis vinifera HOM05D001100 ORTHO05D007514 3.1e-24 115.2 92 70.7
Lj1A1214T67 Lonicera japonica HOM05D001100 ORTHO05D007514 5.3e-24 114.4 85 68.2
Manes.17G033700 Manihot esculenta HOM05D001100 ORTHO05D007514 9.1e-24 113.6 104 63.5
A09p25750 Brassica napus HOM05D001100 ORTHO05D007514 1.2e-23 113.2 97 63.9
BraA09t38144Z Brassica rapa HOM05D001100 ORTHO05D007514 1.2e-23 113.2 97 63.9
Ciclev10015399m.g Citrus clementina HOM05D001100 ORTHO05D007514 1.2e-23 113.2 85 70.6
BcaB01g01868 Brassica carinata HOM05D001100 ORTHO05D007514 2.0e-23 112.5 97 61.9
CiPaw.10G117500 Carya illinoinensis HOM05D001100 ORTHO05D007514 2.0e-23 112.5 103 64.1
Lsat_1_v5_gn_4_56421 Lactuca sativa HOM05D001100 ORTHO05D007514 2.0e-23 112.5 106 59.4
Duzib235G0531 Durio zibethinus HOM05D001100 ORTHO05D007514 2.7e-23 112.1 97 61.9
Lj6g0001591 Lotus japonicus HOM05D001100 ORTHO05D007514 3.5e-23 111.7 100 61.0
Potri.004G033200 Populus trichocarpa HOM05D001100 ORTHO05D007514 3.5e-23 111.7 98 63.3
Nn1g06802 Nelumbo nucifera HOM05D001100 ORTHO05D007514 4.5e-23 111.3 83 68.7
BcaC04g21369 Brassica carinata HOM05D001100 ORTHO05D007514 5.9e-23 110.9 97 63.9
C09p32620 Brassica napus HOM05D001100 ORTHO05D007514 5.9e-23 110.9 97 63.9
Sp6g03900 Schrenkiella parvula HOM05D001100 ORTHO05D007514 1.0e-22 110.2 97 60.8
BolC9t56107H Brassica oleracea HOM05D001100 ORTHO05D007514 1.3e-22 109.8 97 62.9
MBI18_g26906_MAGBIO Magnolia biondii HOM05D001100 ORTHO05D007514 1.3e-22 109.8 87 66.7
Carub.0006s3305 Capsella rubella HOM05D001100 ORTHO05D007514 1.7e-22 109.4 98 60.2
DCAR_028145 Daucus carota HOM05D001100 ORTHO05D007514 1.7e-22 109.4 70 75.7
Peaxi162Scf00779g00210 Petunia axillaris HOM05D001100 ORTHO05D007514 2.9e-22 108.6 65 81.5
TPR.G36734 Trifolium pratense HOM05D001100 ORTHO05D007514 2.9e-22 108.6 100 61.0
Aa31LG9G9380 Aethionema arabicum HOM05D001100 ORTHO05D007514 3.8e-22 108.2 100 60.0
Medtr2g011680 Medicago truncatula HOM05D001100 ORTHO05D007514 3.8e-22 108.2 98 59.2
Ca_29840_v3 Cicer arietinum L. HOM05D001100 ORTHO05D007514 6.5e-22 107.5 65 76.9
CARHR252470 Cardamine hirsuta HOM05D001100 ORTHO05D007514 8.5e-22 107.1 74 67.6
Eucgr.E03818 Eucalyptus grandis HOM05D001100 ORTHO05D007514 8.5e-22 107.1 67 77.6
Glyma.15G066900 Glycine max HOM05D001100 ORTHO05D007514 8.5e-22 107.1 64 73.4
AT4G05090 Arabidopsis thaliana HOM05D001100 ORTHO05D007514 1.5e-21 106.3 103 59.2
Ca_00249_v3 Cicer arietinum L. HOM05D001100 ORTHO05D007514 1.5e-21 106.3 65 75.4
Thhalv10028719m.g Eutrema salsugineum HOM05D001100 ORTHO05D007514 1.5e-21 106.3 98 60.2
Glyma.13G247100 Glycine max HOM05D001100 ORTHO05D007514 1.5e-21 106.3 91 63.7
PSO423G0128 Papaver somniferum HOM05D001100 ORTHO05D007514 1.5e-21 106.3 102 58.8
ClCG01G022470 Citrullus lanatus HOM05D001100 ORTHO05D007514 1.9e-21 105.9 97 57.7
BcaB06g28342 Brassica carinata HOM05D001100 ORTHO05D007514 2.5e-21 105.5 71 70.4
COL.COLO4_31601 Corchorus olitorius HOM05D001100 ORTHO05D007514 3.2e-21 105.1 96 63.5
PSO079G0027 Papaver somniferum HOM05D001100 ORTHO05D007514 3.2e-21 105.1 80 68.8
Aqoxy1G03915 Aquilegia oxysepala HOM05D001100 ORTHO05D007514 5.5e-21 104.4 65 75.4
MD10G1304400 Malus domestica HOM05D001100 ORTHO05D007514 5.5e-21 104.4 93 64.5
Lalb_Chr20g0122331 Lupinus albus HOM05D001100 ORTHO05D007514 9.4e-21 103.6 70 70.0
Psat1g209040 Pisum sativum HOM05D001100 ORTHO05D007514 9.4e-21 103.6 65 72.3
CsaV3_6G049640 Cucumis sativus L. HOM05D001100 ORTHO05D007514 1.2e-20 103.2 64 76.6
ATR0693G145 Amborella trichopoda HOM05D001100 ORTHO05D007514 1.6e-20 102.8 85 62.4
CDE02G3173 Ceratophyllum demersum HOM05D001100 ORTHO05D007514 1.6e-20 102.8 79 60.8
Sed0027927 Sechium edule HOM05D001100 ORTHO05D007514 1.6e-20 102.8 95 62.1
MELO3C007329.2 Cucumis melo HOM05D001100 ORTHO05D007514 2.1e-20 102.4 64 75.0
PGR042G3840 Punica granatum HOM05D001100 ORTHO05D007514 2.7e-20 102.1 78 67.9
THA.LOC104806271 Tarenaya hassleriana HOM05D001100 ORTHO05D007514 2.7e-20 102.1 70 68.6
Cpa.g.sc27.134 Carica papaya HOM05D001100 ORTHO05D007514 3.6e-20 101.7 82 62.2
unitig_37.g12335 Utricularia gibba HOM05D001100 ORTHO05D007514 3.6e-20 101.7 74 66.2
EL10Ac8g20544 Beta vulgaris HOM05D001100 ORTHO05D007514 4.7e-20 101.3 93 58.1
AUR62012491 Chenopodium quinoa HOM05D001100 ORTHO05D007514 6.1e-20 100.9 73 67.1
Prupe.4G035200 Prunus persica HOM05D001100 ORTHO05D007514 6.1e-20 100.9 93 61.3
AUR62014704 Chenopodium quinoa HOM05D001100 ORTHO05D007514 1.4e-19 99.8 65 72.3
MD05G1326400 Malus domestica HOM05D001100 ORTHO05D007514 1.4e-19 99.8 93 62.4
vmacro03805 Vaccinium macrocarpon HOM05D001100 ORTHO05D007514 1.4e-19 99.8 64 73.4
Gorai.011G023700 Gossypium raimondii HOM05D001100 ORTHO05D007514 3.0e-19 98.6 89 64.0
SEGI_35269 Sequoiadendron giganteum HOM05D001100 ORTHO05D007514 3.0e-19 98.6 80 61.2
Gohir.A10G021800 Gossypium hirsutum HOM05D001100 ORTHO05D007514 4.0e-19 98.2 89 64.0
Gohir.D10G022600 Gossypium hirsutum HOM05D001100 ORTHO05D007514 5.2e-19 97.8 89 64.0
Duzib116G0436 Durio zibethinus HOM05D001100 ORTHO05D007514 6.8e-19 97.4 62 71.0
ECA234G0676 Erigeron canadensis HOM05D001100 ORTHO05D007514 6.8e-19 97.4 70 72.9
Sc06g0010650 Simmondsia chinensis HOM05D001100 ORTHO05D007514 6.8e-19 97.4 64 76.6
arahy.Tifrunner.gnm1.ann1.F2LMP4 Arachis hypogaea HOM05D001100 ORTHO05D007514 8.8e-19 97.1 75 64.0
arahy.Tifrunner.gnm1.ann1.Y92ER0 Arachis hypogaea HOM05D001100 ORTHO05D007514 2.0e-18 95.9 63 71.4
Phvul.006G192800 Phaseolus vulgaris HOM05D001100 ORTHO05D007514 2.0e-18 95.9 65 67.7
VMungo0540G1113 Vigna mungo HOM05D001100 ORTHO05D007514 3.4e-18 95.1 87 55.2
HanXRQChr17g0552591 Helianthus annuus HOM05D001100 ORTHO05D007514 7.5e-18 94.0 59 78.0
Os07g0558200 Oryza sativa ssp. japonica HOM05D001100 ORTHO05D007514 1.3e-17 93.2 64 67.2
Os07g0558300 Oryza sativa ssp. japonica HOM05D001100 ORTHO05D007514 2.8e-17 92.0 72 61.1
Zm00001eb324080 Zea mays HOM05D001100 ORTHO05D007514 3.1e-16 88.6 64 68.8
FAN21G0538 Fragaria x ananassa HOM05D001100 ORTHO05D007514 7.0e-16 87.4 67 62.7
FvH4_3g03790 Fragaria vesca HOM05D001100 ORTHO05D007514 2.7e-15 85.5 67 61.2
FAN11G0383 Fragaria x ananassa HOM05D001100 ORTHO05D007514 2.7e-15 85.5 67 61.2
TWI63G1131 Tripterygium wilfordii HOM05D001100 ORTHO05D007514 7.7e-15 84.0 68 69.1
RcHm_v2.0_Chr5g0006041 Rosa chinensis HOM05D001100 ORTHO05D007514 1.3e-14 83.2 69 58.0
CDE05G2691 Ceratophyllum demersum HOM05D001100 ORTHO05D007514 2.9e-14 82.0 53 69.8
FAN25G0315 Fragaria x ananassa HOM05D001100 ORTHO05D007514 5.0e-14 81.3 63 60.3
BcaB03g15312 Brassica carinata HOM05D001100 ORTHO05D007514 1.9e-13 79.3 72 51.4
Mapoly0031s0113 Marchantia polymorpha HOM05D001100 ORTHO05D007514 1.2e-12 76.6 91 48.4
Dinv40471 Davidia involucrata HOM05D001100 ORTHO05D007514 4.0e-11 71.6 72 58.3
Nitab4.5_0000649g0100 Nicotiana tabacum HOM05D001100 ORTHO05D007514 1.3e-09 66.6 34 97.1
Pp3c14_9660 Physcomitrium patens HOM05D001100 ORTHO05D007514 7.0e-08 60.8 94 41.5
MD10G1301100 Malus domestica HOM05D001100 ORTHO05D001503 1.2e-07 60.1 93 41.9
arahy.Tifrunner.gnm1.ann1.IT4TLX Arachis hypogaea HOM05D001100 ORTHO05D001503 2.0e-07 59.3 57 57.9
arahy.Tifrunner.gnm1.ann1.NC667I Arachis hypogaea HOM05D001100 ORTHO05D001503 2.0e-07 59.3 57 57.9
Duzib213G0651 Durio zibethinus HOM05D001100 ORTHO05D001503 2.7e-07 58.9 60 51.7
Actinidia01923 Actinidia chinensis HOM05D001100 ORTHO05D001503 3.5e-07 58.5 61 49.2
CiPaw.09G159900 Carya illinoinensis HOM05D001100 ORTHO05D001503 3.5e-07 58.5 69 46.4
MD05G1323300 Malus domestica HOM05D001100 ORTHO05D001503 4.5e-07 58.2 67 49.3
Sed0002135 Sechium edule HOM05D001100 ORTHO05D001503 4.5e-07 58.2 91 37.4
COL.COLO4_09462 Corchorus olitorius HOM05D001100 ORTHO05D001503 5.9e-07 57.8 60 51.7
Os02g0805500 Oryza sativa ssp. japonica HOM05D001100 ORTHO05D001503 7.7e-07 57.4 66 50.0
Pp3c3_21240 Physcomitrium patens HOM05D001100 ORTHO05D001503 7.7e-07 57.4 60 45.0
ECA234G2407 Erigeron canadensis HOM05D001100 ORTHO05D001503 1.0e-06 57.0 57 54.4
QL08p019034 Quercus lobata HOM05D001100 ORTHO05D001503 1.0e-06 57.0 56 53.6
HPP92_013157 Vanilla planifolia HOM05D001100 ORTHO05D001503 1.0e-06 57.0 95 40.0
Aqoxy1G02660 Aquilegia oxysepala HOM05D001100 ORTHO05D001503 1.3e-06 56.6 66 47.0
Oeu031649.1 Olea europaea HOM05D001100 ORTHO05D001503 1.3e-06 56.6 56 50.0
ATR0693G320 Amborella trichopoda HOM05D001100 ORTHO05D001503 1.7e-06 56.2 55 49.1
Nn1g06698 Nelumbo nucifera HOM05D001100 ORTHO05D001503 1.7e-06 56.2 75 42.7
Oeu053966.2 Olea europaea HOM05D001100 ORTHO05D001503 1.7e-06 56.2 56 48.2
PGR004G1129 Punica granatum HOM05D001100 ORTHO05D001503 1.7e-06 56.2 95 40.0
TAR624G0534 Trochodendron aralioides HOM05D001100 ORTHO05D001503 1.7e-06 56.2 56 50.0
Cfa000374 Carpinus fangiana HOM05D001100 ORTHO05D001503 2.3e-06 55.8 56 50.0
Glyma.06G249500 Glycine max HOM05D001100 ORTHO05D001503 2.3e-06 55.8 59 49.2
GSVIVG01005836001 Vitis vinifera HOM05D001100 ORTHO05D001503 2.3e-06 55.8 63 49.2
CSS0015291 Camellia sinensis var. sinensis HOM05D001100 ORTHO05D001503 2.9e-06 55.5 56 51.8
Ciclev10008644m.g Citrus clementina HOM05D001100 ORTHO05D001503 2.9e-06 55.5 61 47.5
Hma1.2p1_0144F.1_g065020 Hydrangea macrophylla HOM05D001100 ORTHO05D001503 2.9e-06 55.5 69 42.0
Manes.16G022600 Manihot esculenta HOM05D001100 ORTHO05D001503 2.9e-06 55.5 69 44.9
MELO3C002563.2 Cucumis melo HOM05D001100 ORTHO05D001503 3.8e-06 55.1 94 35.1
DCAR_017157 Daucus carota HOM05D001100 ORTHO05D001503 3.8e-06 55.1 59 47.5
Dinv39795 Davidia involucrata HOM05D001100 ORTHO05D001503 3.8e-06 55.1 56 51.8
ECA236G0140 Erigeron canadensis HOM05D001100 ORTHO05D001503 3.8e-06 55.1 56 48.2
Glyma.12G148400 Glycine max HOM05D001100 ORTHO05D001503 3.8e-06 55.1 60 46.7
Zm00001eb192000 Zea mays HOM05D001100 ORTHO05D001503 3.8e-06 55.1 61 49.2
Cc02_g12650 Coffea canephora HOM05D001100 ORTHO05D001503 5.0e-06 54.7 64 46.9
Haze_06551 Corylus avellana HOM05D001100 ORTHO05D001503 5.0e-06 54.7 56 48.2
Phvul.006G190400 Phaseolus vulgaris HOM05D001100 ORTHO05D001503 5.0e-06 54.7 72 41.7
arahy.Tifrunner.gnm1.ann1.1HMN83 Arachis hypogaea HOM05D001100 ORTHO05D001503 6.6e-06 54.3 66 43.9
CDE12G0704 Ceratophyllum demersum HOM05D001100 ORTHO05D001503 6.6e-06 54.3 68 42.6
Duzib235G1189 Durio zibethinus HOM05D001100 ORTHO05D001503 6.6e-06 54.3 56 50.0
Glyma.13G244900 Glycine max HOM05D001100 ORTHO05D001503 6.6e-06 54.3 65 46.2
RcHm_v2.0_Chr5g0006821 Rosa chinensis HOM05D001100 ORTHO05D001503 6.6e-06 54.3 59 47.5
Thecc.07G074400 Theobroma cacao HOM05D001100 ORTHO05D001503 6.6e-06 54.3 60 48.3
arahy.Tifrunner.gnm1.ann1.U4QVWL Arachis hypogaea HOM05D001100 ORTHO05D001503 8.6e-06 53.9 66 43.9
Eucgr.F03343 Eucalyptus grandis HOM05D001100 ORTHO05D001503 8.6e-06 53.9 56 48.2
FAN16G2544 Fragaria x ananassa HOM05D001100 ORTHO05D001503 8.6e-06 53.9 56 51.8
FAN25G3062 Fragaria x ananassa HOM05D001100 ORTHO05D001503 8.6e-06 53.9 56 51.8
Gohir.A01G067300 Gossypium hirsutum HOM05D001100 ORTHO05D001503 8.6e-06 53.9 60 50.0
Gohir.D01G054500 Gossypium hirsutum HOM05D001100 ORTHO05D001503 8.6e-06 53.9 60 50.0
Gorai.002G074400 Gossypium raimondii HOM05D001100 ORTHO05D001503 8.6e-06 53.9 60 50.0
Gorai.011G024100 Gossypium raimondii HOM05D001100 ORTHO05D001503 8.6e-06 53.9 56 48.2
Lsat_1_v5_gn_7_106201 Lactuca sativa HOM05D001100 ORTHO05D001503 8.6e-06 53.9 56 48.2
Lalb_Chr15g0090021 Lupinus albus HOM05D001100 ORTHO05D001503 8.6e-06 53.9 70 41.4
Nn1g03945 Nelumbo nucifera HOM05D001100 ORTHO05D001503 8.6e-06 53.9 63 46.0
QL05p038543 Quercus lobata HOM05D001100 ORTHO05D001503 8.6e-06 53.9 61 44.3
RcHm_v2.0_Chr5g0035001 Rosa chinensis HOM05D001100 ORTHO05D001503 8.6e-06 53.9 56 51.8
Thecc.06G196000 Theobroma cacao HOM05D001100 ORTHO05D001503 8.6e-06 53.9 67 46.3
TAR626G0779 Trochodendron aralioides HOM05D001100 ORTHO05D001503 8.6e-06 53.9 63 49.2


User provided reference genes

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