Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010616g0050 Nicotiana tabacum HOM05D004324 ORTHO05D004840 1.8e-190 669.1 339 100.0
Nitab4.5_0000457g0100 Nicotiana tabacum HOM05D004324 ORTHO05D004840 2.9e-188 661.8 339 99.1
Sopen01g036910 Solanum pennellii HOM05D004324 ORTHO05D004840 7.4e-184 647.1 339 95.9
Solyc01g091160.4 Solanum lycopersicum HOM05D004324 ORTHO05D004840 1.6e-183 646.0 339 95.6
CAN.G388.33 Capsicum annuum HOM05D004324 ORTHO05D004840 1.1e-182 643.3 338 95.3
Peaxi162Scf00013g03018 Petunia axillaris HOM05D004324 ORTHO05D004840 6.9e-182 640.6 339 94.7
Manes.05G047100 Manihot esculenta HOM05D004324 ORTHO05D004840 8.7e-177 623.6 339 90.9
MSTRG.17174 Avicennia marina HOM05D004324 ORTHO05D004840 1.5e-176 622.9 339 89.7
Hma1.2p1_0442F.1_g153860 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 1.9e-176 622.5 337 91.4
Manes.01G267300 Manihot esculenta HOM05D004324 ORTHO05D004840 5.7e-176 620.9 339 90.3
Ciclev10021006m.g Citrus clementina HOM05D004324 ORTHO05D004840 7.4e-176 620.5 335 90.7
Cc02_g24110 Coffea canephora HOM05D004324 ORTHO05D004840 7.4e-176 620.5 339 91.2
Nn1g01122 Nelumbo nucifera HOM05D004324 ORTHO05D004840 1.3e-175 619.8 335 91.0
vmacro13417 Vaccinium macrocarpon HOM05D004324 ORTHO05D004840 1.7e-175 619.4 339 90.3
EL10Ac1g00868 Beta vulgaris HOM05D004324 ORTHO05D004840 2.2e-175 619.0 339 90.3
SalBow5G2819 Salvia bowleyana HOM05D004324 ORTHO05D004840 2.8e-175 618.6 339 90.9
Dinv32365 Davidia involucrata HOM05D004324 ORTHO05D004840 3.7e-175 618.2 339 89.4
GSVIVG01027662001 Vitis vinifera HOM05D004324 ORTHO05D004840 3.7e-175 618.2 338 90.2
Migut.B01616 Erythranthe guttata HOM05D004324 ORTHO05D004840 4.8e-175 617.8 339 89.7
Actinidia12245 Actinidia chinensis HOM05D004324 ORTHO05D004840 1.1e-174 616.7 339 91.2
RcHm_v2.0_Chr1g0349771 Rosa chinensis HOM05D004324 ORTHO05D004840 1.1e-174 616.7 339 89.7
MD07G1119200 Malus domestica HOM05D004324 ORTHO05D004840 1.8e-174 615.9 339 90.0
Potri.002G146200 Populus trichocarpa HOM05D004324 ORTHO05D004840 6.9e-174 614.0 339 89.7
FAN03G2758 Fragaria x ananassa HOM05D004324 ORTHO05D004840 3.4e-173 611.7 339 88.8
FAN06G1729 Fragaria x ananassa HOM05D004324 ORTHO05D004840 3.4e-173 611.7 339 88.8
FAN06G4220 Fragaria x ananassa HOM05D004324 ORTHO05D004840 3.4e-173 611.7 339 88.8
Cpa.g.sc145.18 Carica papaya HOM05D004324 ORTHO05D004840 4.5e-173 611.3 339 89.1
HanXRQChr16g0519961 Helianthus annuus HOM05D004324 ORTHO05D004840 5.9e-173 610.9 339 89.7
Thecc.08G173500 Theobroma cacao HOM05D004324 ORTHO05D004840 7.7e-173 610.5 340 88.8
TWI59G0845 Tripterygium wilfordii HOM05D004324 ORTHO05D004840 7.7e-173 610.5 339 88.5
Rhsim07G0029000 Rhododendron simsii HOM05D004324 ORTHO05D004840 1.0e-172 610.1 362 85.6
FAN01G0081 Fragaria x ananassa HOM05D004324 ORTHO05D004840 1.3e-172 609.8 339 88.5
THA.LOC104826515 Tarenaya hassleriana HOM05D004324 ORTHO05D004840 1.3e-172 609.8 339 89.4
Aqoxy7G00682 Aquilegia oxysepala HOM05D004324 ORTHO05D004840 1.7e-172 609.4 339 89.4
Potri.014G067700 Populus trichocarpa HOM05D004324 ORTHO05D004840 2.2e-172 609.0 332 90.4
Lsat_1_v5_gn_4_43080 Lactuca sativa HOM05D004324 ORTHO05D004840 2.9e-172 608.6 335 90.4
Sc26g0001240 Simmondsia chinensis HOM05D004324 ORTHO05D004840 2.9e-172 608.6 339 89.1
Gorai.009G265900 Gossypium raimondii HOM05D004324 ORTHO05D004840 3.8e-172 608.2 334 89.8
QL08p052832 Quercus lobata HOM05D004324 ORTHO05D004840 3.8e-172 608.2 338 89.1
Oeu055504.4 Olea europaea HOM05D004324 ORTHO05D004840 6.5e-172 607.4 376 82.4
Duzib177G0253 Durio zibethinus HOM05D004324 ORTHO05D004840 8.5e-172 607.1 335 89.0
Gohir.D05G254400 Gossypium hirsutum HOM05D004324 ORTHO05D004840 8.5e-172 607.1 334 89.5
Aa31LG9G14610 Aethionema arabicum HOM05D004324 ORTHO05D004840 1.1e-171 606.7 341 89.4
Duzib268G1605 Durio zibethinus HOM05D004324 ORTHO05D004840 1.4e-171 606.3 335 88.7
CANSAT56G0022 Cannabis sativa HOM05D004324 ORTHO05D004840 1.9e-171 605.9 334 88.9
PSO782G5694 Papaver somniferum HOM05D004324 ORTHO05D004840 4.2e-171 604.7 335 89.6
TAR375G0703 Trochodendron aralioides HOM05D004324 ORTHO05D004840 4.2e-171 604.7 335 88.7
Sopen01g036920 Solanum pennellii HOM05D004324 ORTHO05D004840 7.2e-171 604.0 339 87.9
COL.COLO4_24610 Corchorus olitorius HOM05D004324 ORTHO05D004840 9.4e-171 603.6 332 89.5
SGA_v2.0_scaffold153G36989 Striga asiatica HOM05D004324 ORTHO05D004840 1.2e-170 603.2 335 89.6
CiPaw.01G263900 Carya illinoinensis HOM05D004324 ORTHO05D004840 1.6e-170 602.8 339 87.9
Solyc01g091170.3 Solanum lycopersicum HOM05D004324 ORTHO05D004840 1.6e-170 602.8 339 87.6
Eucgr.E01445 Eucalyptus grandis HOM05D004324 ORTHO05D004840 2.1e-170 602.4 339 87.3
ECA234G2725 Erigeron canadensis HOM05D004324 ORTHO05D004840 2.7e-170 602.1 335 89.3
Prupe.2G142300 Prunus persica HOM05D004324 ORTHO05D004840 7.9e-170 600.5 339 87.0
PGR042G0702 Punica granatum HOM05D004324 ORTHO05D004840 1.0e-169 600.1 339 87.0
PSO478G0881 Papaver somniferum HOM05D004324 ORTHO05D004840 1.8e-169 599.4 335 89.0
Hund27368 Selenicereus undatus HOM05D004324 ORTHO05D004840 2.3e-169 599.0 328 88.7
Sp6g08900 Schrenkiella parvula HOM05D004324 ORTHO05D004840 3.9e-169 598.2 338 87.9
CDE04G0300 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 8.8e-169 597.0 327 89.6
DCAR_008551 Daucus carota HOM05D004324 ORTHO05D004840 2.0e-168 595.9 324 90.1
CARHR259850 Cardamine hirsuta HOM05D004324 ORTHO05D004840 2.6e-168 595.5 341 87.1
BcaB01g02843 Brassica carinata HOM05D004324 ORTHO05D004840 4.4e-168 594.7 342 86.5
Atru.chr5.282 Acer truncatum HOM05D004324 ORTHO05D004840 7.4e-168 594.0 335 87.5
AT4G08900 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 9.7e-168 593.6 338 87.9
AL6G41660 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 1.7e-167 592.8 341 86.8
ClCG06G000480 Citrullus lanatus HOM05D004324 ORTHO05D004840 2.2e-167 592.4 339 85.5
SHI13535 Sapria himalayana HOM05D004324 ORTHO05D004840 2.2e-167 592.4 334 87.1
Thecc.08G173700 Theobroma cacao HOM05D004324 ORTHO05D004840 6.3e-167 590.9 340 85.0
CSS0015452 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 8.2e-167 590.5 339 85.5
CSS0042374 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 8.2e-167 590.5 339 85.5
Lalb_Chr12g0208141 Lupinus albus HOM05D004324 ORTHO05D004840 1.1e-166 590.1 339 85.3
BcaC01g04748 Brassica carinata HOM05D004324 ORTHO05D004840 1.8e-166 589.3 338 86.4
A03p28290 Brassica napus HOM05D004324 ORTHO05D004840 6.9e-166 587.4 338 86.1
CsaV3_6G006290 Cucumis sativus L. HOM05D004324 ORTHO05D004840 6.9e-166 587.4 339 85.0
Lj3g0015076 Lotus japonicus HOM05D004324 ORTHO05D004840 6.9e-166 587.4 339 84.4
C03p34220 Brassica napus HOM05D004324 ORTHO05D004840 1.2e-165 586.6 338 86.1
BraA03t12035Z Brassica rapa HOM05D004324 ORTHO05D004840 1.2e-165 586.6 338 86.1
Carub.0006s2738 Capsella rubella HOM05D004324 ORTHO05D004840 1.2e-165 586.6 338 87.3
unitig_899.g15094 Utricularia gibba HOM05D004324 ORTHO05D004840 1.5e-165 586.3 324 88.6
HPP92_007375 Vanilla planifolia HOM05D004324 ORTHO05D004840 2.0e-165 585.9 335 85.7
BolC3t15731H Brassica oleracea HOM05D004324 ORTHO05D004840 2.6e-165 585.5 338 85.8
ATR0665G432 Amborella trichopoda HOM05D004324 ORTHO05D004840 4.5e-165 584.7 339 85.5
CSS0002473 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 4.5e-165 584.7 315 91.7
AUR62013655 Chenopodium quinoa HOM05D004324 ORTHO05D004840 4.5e-165 584.7 339 82.6
RcHm_v2.0_Chr1g0349751 Rosa chinensis HOM05D004324 ORTHO05D004840 4.5e-165 584.7 338 86.1
Ca_19938_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 5.9e-165 584.3 339 84.7
Os04g0106300 Oryza sativa ssp. japonica HOM05D004324 ORTHO05D004840 1.7e-164 582.8 336 85.7
TPR.G7599 Trifolium pratense HOM05D004324 ORTHO05D004840 2.2e-164 582.4 339 84.1
Sc26g0001250 Simmondsia chinensis HOM05D004324 ORTHO05D004840 1.1e-163 580.1 339 85.3
Thhalv10028793m.g Eutrema salsugineum HOM05D004324 ORTHO05D004840 1.9e-163 579.3 315 90.8
AUR62004190 Chenopodium quinoa HOM05D004324 ORTHO05D004840 9.4e-163 577.0 339 81.4
Sed0016777 Sechium edule HOM05D004324 ORTHO05D004840 2.1e-162 575.9 339 83.5
Psat0s3070g0160 Pisum sativum HOM05D004324 ORTHO05D004840 1.0e-161 573.5 339 82.9
Glyma.01G140200 Glycine max HOM05D004324 ORTHO05D004840 3.9e-161 571.6 339 83.2
Glyma.17G131300 Glycine max HOM05D004324 ORTHO05D004840 6.7e-161 570.9 339 83.5
arahy.Tifrunner.gnm1.ann1.2VF8XD Arachis hypogaea HOM05D004324 ORTHO05D004840 1.3e-159 566.6 365 78.6
Phvul.010G081600 Phaseolus vulgaris HOM05D004324 ORTHO05D004840 1.3e-159 566.6 334 83.5
AT4G08870 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 1.8e-158 562.8 341 81.2
CiPaw.02G169300 Carya illinoinensis HOM05D004324 ORTHO05D004840 1.2e-157 560.1 328 83.5
arahy.Tifrunner.gnm1.ann1.J6F3FE Arachis hypogaea HOM05D004324 ORTHO05D004840 1.1e-155 553.5 394 73.1
SEGI_09298 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 4.2e-155 551.6 339 79.4
Carub.0006s2736 Capsella rubella HOM05D004324 ORTHO05D004840 7.2e-155 550.8 341 79.2
Haze_16793 Corylus avellana HOM05D004324 ORTHO05D004840 9.4e-155 550.4 359 78.3
Lj3g0002034 Lotus japonicus HOM05D004324 ORTHO05D004840 8.8e-153 543.9 339 77.6
Mapoly0082s0038 Marchantia polymorpha HOM05D004324 ORTHO05D004840 8.2e-151 537.3 315 81.3
Lj7A531T56 Lonicera japonica HOM05D004324 ORTHO05D004840 4.1e-150 535.0 339 81.1
Ah.05g174550 Amaranthus hybridus HOM05D004324 ORTHO05D004840 9.1e-150 533.9 334 76.6
Lj3g0008609 Lotus japonicus HOM05D004324 ORTHO05D004840 5.9e-149 531.2 339 76.4
Glyma.03G028000 Glycine max HOM05D004324 ORTHO05D004840 6.5e-148 527.7 335 75.2
Medtr4g024960 Medicago truncatula HOM05D004324 ORTHO05D004840 3.2e-147 525.4 339 75.2
SMO367G0287 Selaginella moellendorffii HOM05D004324 ORTHO05D004840 1.4e-145 520.0 334 76.6
TPR.G7597 Trifolium pratense HOM05D004324 ORTHO05D004840 7.5e-144 514.2 343 73.5
Lj3g0012371 Lotus japonicus HOM05D004324 ORTHO05D004840 3.7e-143 511.9 338 73.4
Pp3c5_2190 Physcomitrium patens HOM05D004324 ORTHO05D004840 3.0e-137 492.3 313 74.8
HanXRQChr16g0519941 Helianthus annuus HOM05D004324 ORTHO05D004840 7.0e-134 481.1 335 70.4
CBR_g50887 Chara braunii HOM05D004324 ORTHO05D004840 1.2e-130 470.3 312 73.4
Dinv43690 Davidia involucrata HOM05D004324 ORTHO05D004840 7.0e-126 454.5 339 71.1
COL.COLO4_24608 Corchorus olitorius HOM05D004324 ORTHO05D004840 3.1e-121 439.1 332 67.2
Sed0023731 Sechium edule HOM05D004324 ORTHO05D004840 1.5e-120 436.8 252 84.5
Psat7g231720 Pisum sativum HOM05D004324 ORTHO05D004840 2.6e-120 436.0 320 65.3
MELO3C022492.2 Cucumis melo HOM05D004324 ORTHO05D004840 2.8e-114 416.0 239 84.1
Atru.chr5.284 Acer truncatum HOM05D004324 ORTHO05D004840 1.1e-113 414.1 245 83.3
Hma1.2p1_0375F.1_g138670 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 4.0e-113 412.1 245 84.9
SEGI_04392 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 3.7e-111 405.6 249 79.9
arahy.Tifrunner.gnm1.ann1.J17N2W Arachis hypogaea HOM05D004324 ORTHO05D004840 5.1e-108 395.2 327 63.9
FvH4_7g11450 Fragaria vesca HOM05D004324 ORTHO05D004840 3.6e-106 389.0 219 86.8
Medtr4g024940 Medicago truncatula HOM05D004324 ORTHO05D004840 8.1e-106 387.9 231 81.8
MBI04_g35670_MAGBIO Magnolia biondii HOM05D004324 ORTHO05D004840 1.4e-105 387.1 216 88.0
Zm00001eb418690 Zea mays HOM05D004324 ORTHO05D004840 7.6e-104 381.3 208 90.4
AL6G42680 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 5.4e-94 348.6 194 87.1
Psat6g218040 Pisum sativum HOM05D004324 ORTHO05D004840 1.2e-93 347.4 326 55.5
Gohir.A05G252532 Gossypium hirsutum HOM05D004324 ORTHO05D004840 7.8e-93 344.7 188 89.4
AagrBONN_evm.TU.Sc2ySwM_368.1743 Anthoceros agrestis HOM05D004324 ORTHO05D004840 2.0e-88 330.1 200 79.0
Medtr0088s0100 Medicago truncatula HOM05D004324 ORTHO05D004840 1.3e-84 317.4 332 51.2
SGA_v2.0_scaffold11G05569 Striga asiatica HOM05D004324 ORTHO05D004840 6.0e-77 292.0 242 61.2
Sc26g0001270 Simmondsia chinensis HOM05D004324 ORTHO05D004840 2.5e-75 286.6 171 84.2
Psat6g218080 Pisum sativum HOM05D004324 ORTHO05D004840 6.2e-74 282.0 195 67.2
RcHm_v2.0_Chr1g0349761 Rosa chinensis HOM05D004324 ORTHO05D004840 3.4e-64 249.6 145 84.1
Gohir.A05G252466 Gossypium hirsutum HOM05D004324 ORTHO05D004840 5.0e-63 245.7 135 89.6
AL6G42730 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 2.7e-53 213.4 147 70.7
Psat6g217960 Pisum sativum HOM05D004324 ORTHO05D004840 1.3e-50 204.5 155 62.6
CDE02G4314 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 2.5e-46 190.3 148 68.9
Actinidia02863 Actinidia chinensis HOM05D004324 ORTHO05D004840 2.4e-41 173.7 98 87.8
arahy.Tifrunner.gnm1.ann1.V33WN8 Arachis hypogaea HOM05D004324 ORTHO05D004840 5.0e-39 166.0 87 89.7
MD02G1206600 Malus domestica HOM05D004324 ORTHO05D004840 5.7e-35 152.5 82 86.6
Duzib177G0443 Durio zibethinus HOM05D004324 ORTHO05D004840 1.4e-33 147.9 101 76.2
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 1.8e-33 147.5 87 85.1
SEGI_10460 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 5.3e-33 146.0 104 68.3
MD02G1206500 Malus domestica HOM05D004324 ORTHO05D004840 7.0e-33 145.6 74 93.2
CAN.G23.23 Capsicum annuum HOM05D004324 ORTHO05D004840 2.9e-31 140.2 78 85.9
Duzib106G1980 Durio zibethinus HOM05D004324 ORTHO05D004840 1.3e-26 124.8 88 69.3
Sc26g0001260 Simmondsia chinensis HOM05D004324 ORTHO05D004840 1.6e-24 117.9 127 55.9
Actinidia02867 Actinidia chinensis HOM05D004324 ORTHO05D004840 2.0e-24 117.5 104 62.5
Actinidia31395 Actinidia chinensis HOM05D004324 ORTHO05D004840 3.8e-23 113.2 73 79.5
Prupe.7G087800 Prunus persica HOM05D004324 ORTHO05D004840 9.5e-22 108.6 124 56.5
MCO07G634 Micromonas commoda HOM05D004324 ORTHO05D004840 1.3e-18 98.2 285 30.5
Psat0s13993g0040 Pisum sativum HOM05D004324 ORTHO05D004840 8.3e-18 95.5 74 64.9
Pp3s30_709 Physcomitrium patens HOM05D004324 ORTHO05D004840 2.4e-17 94.0 234 29.9
Cfa025533 Carpinus fangiana HOM05D000146 ORTHO05D004840 2.0e-16 90.9 323 26.6
Ca_28979_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 1.0e-15 88.6 281 29.9
Cfa023222 Carpinus fangiana HOM05D004324 ORTHO05D004840 1.9e-14 84.3 268 29.5
Actinidia02866 Actinidia chinensis HOM05D004324 ORTHO05D004840 1.5e-11 74.7 103 47.6
Prupe.2G076400 Prunus persica HOM05D004324 ORTHO05D004840 9.8e-11 72.0 53 69.8
Cfa024978 Carpinus fangiana HOM05D004324 ORTHO05D034102 1.6e-08 64.7 247 27.1
Medtr4g019730 Medicago truncatula HOM05D000814 ORTHO05D004840 6.0e-08 62.8 42 71.4
Aa31sc49G50 Aethionema arabicum HOM05D004324 ORTHO05D004840 1.1e-06 58.5 45 64.4


User provided reference genes

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