Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010521g0010 Nicotiana tabacum HOM05D003840 ORTHO05D004565 2.3e-99 365.5 185 100.0
Nitab4.5_0003769g0100 Nicotiana tabacum HOM05D003840 ORTHO05D004565 6.3e-52 208.0 169 69.8
Nitab4.5_0003769g0030 Nicotiana tabacum HOM05D003840 ORTHO05D004565 4.6e-39 165.2 168 59.5
Peaxi162Scf00069g01212 Petunia axillaris HOM05D003840 ORTHO05D004565 4.6e-39 165.2 168 59.5
Dinv18297 Davidia involucrata HOM05D003840 ORTHO05D004565 1.8e-38 163.3 177 56.5
Cc05_g12240 Coffea canephora HOM05D003840 ORTHO05D004565 3.9e-38 162.2 170 57.6
Oeu005421.1 Olea europaea HOM05D003840 ORTHO05D004565 3.9e-38 162.2 155 60.6
Solyc07g063270.3 Solanum lycopersicum HOM05D003840 ORTHO05D004565 6.7e-38 161.4 152 63.2
Sopen07g031450 Solanum pennellii HOM05D003840 ORTHO05D004565 6.7e-38 161.4 152 63.2
TAR626G1410 Trochodendron aralioides HOM05D003840 ORTHO05D004565 6.7e-38 161.4 153 59.5
Nn1g06588 Nelumbo nucifera HOM05D003840 ORTHO05D004565 1.1e-37 160.6 155 59.4
PGSC0003DMG400012452 Solanum tuberosum HOM05D003840 ORTHO05D004565 1.1e-37 160.6 152 63.2
TAR624G1142 Trochodendron aralioides HOM05D003840 ORTHO05D004565 1.1e-37 160.6 153 60.1
Dinv08310 Davidia involucrata HOM05D003840 ORTHO05D004565 1.5e-37 160.2 175 56.6
Oeu060544.1 Olea europaea HOM05D003840 ORTHO05D004565 1.5e-37 160.2 155 61.3
Actinidia35256 Actinidia chinensis HOM05D003840 ORTHO05D004565 4.4e-37 158.7 153 59.5
Lsat_1_v5_gn_9_97121 Lactuca sativa HOM05D003840 ORTHO05D004565 5.7e-37 158.3 164 58.5
Nitab4.5_0011553g0010 Nicotiana tabacum HOM05D003840 ORTHO05D004565 5.7e-37 158.3 175 57.1
MSTRG.15219 Avicennia marina HOM05D003840 ORTHO05D004565 7.4e-37 157.9 164 59.1
Hma1.2p1_0148F.1_g066150 Hydrangea macrophylla HOM05D003840 ORTHO05D004565 7.4e-37 157.9 165 55.8
Manes.03G112600 Manihot esculenta HOM05D003840 ORTHO05D004565 7.4e-37 157.9 174 52.9
CSS0003611 Camellia sinensis var. sinensis HOM05D003840 ORTHO05D004565 1.3e-36 157.1 153 60.8
Lj8A157T55 Lonicera japonica HOM05D003840 ORTHO05D004565 2.2e-36 156.4 171 55.6
Rhsim04G0019800 Rhododendron simsii HOM05D003840 ORTHO05D004565 2.2e-36 156.4 153 60.8
Sc07g0002600 Simmondsia chinensis HOM05D003840 ORTHO05D004565 3.7e-36 155.6 150 58.7
SGA_v2.0_scaffold73G24291 Striga asiatica HOM05D003840 ORTHO05D004565 3.7e-36 155.6 161 57.8
SalBow7G0398 Salvia bowleyana HOM05D003840 ORTHO05D004565 1.4e-35 153.7 155 59.4
SalBow7G4534 Salvia bowleyana HOM05D003840 ORTHO05D004565 1.4e-35 153.7 155 59.4
Gorai.009G434700 Gossypium raimondii HOM05D003840 ORTHO05D004565 2.4e-35 152.9 176 51.7
Manes.01G147800 Manihot esculenta HOM05D003840 ORTHO05D004565 2.4e-35 152.9 157 56.7
ATR0680G057 Amborella trichopoda HOM05D003840 ORTHO05D004565 3.1e-35 152.5 133 61.7
DCAR_013090 Daucus carota HOM05D003840 ORTHO05D004565 3.1e-35 152.5 161 59.0
Gohir.D05G358600 Gossypium hirsutum HOM05D003840 ORTHO05D004565 3.1e-35 152.5 176 51.7
arahy.Tifrunner.gnm1.ann1.D4F45X Arachis hypogaea HOM05D003840 ORTHO05D004565 4.1e-35 152.1 178 53.4
HanXRQChr13g0407421 Helianthus annuus HOM05D003840 ORTHO05D004565 4.1e-35 152.1 150 59.3
Haze_09463 Corylus avellana HOM05D003840 ORTHO05D004565 5.3e-35 151.8 177 52.5
Duzib213G0026 Durio zibethinus HOM05D003840 ORTHO05D004565 5.3e-35 151.8 155 56.8
Glyma.12G223000 Glycine max HOM05D003840 ORTHO05D004565 5.3e-35 151.8 176 52.8
Glyma.13G278500 Glycine max HOM05D003840 ORTHO05D004565 5.3e-35 151.8 176 51.7
Gohir.A04G028700 Gossypium hirsutum HOM05D003840 ORTHO05D004565 5.3e-35 151.8 176 51.7
Migut.M00853 Erythranthe guttata HOM05D003840 ORTHO05D004565 6.9e-35 151.4 158 55.1
Thecc.06G008900 Theobroma cacao HOM05D003840 ORTHO05D004565 6.9e-35 151.4 154 56.5
unitig_46.g18324 Utricularia gibba HOM05D003840 ORTHO05D004565 6.9e-35 151.4 157 57.3
HPP92_027892 Vanilla planifolia HOM05D003840 ORTHO05D004565 9.1e-35 151.0 167 53.3
arahy.Tifrunner.gnm1.ann1.7MJ4MY Arachis hypogaea HOM05D003840 ORTHO05D004565 1.2e-34 150.6 178 51.7
CsaV3_5G037440 Cucumis sativus L. HOM05D003840 ORTHO05D004565 1.2e-34 150.6 154 55.8
PSO210G5630 Papaver somniferum HOM05D003840 ORTHO05D004565 2.6e-34 149.4 169 53.3
Lj5g0011990 Lotus japonicus HOM05D003840 ORTHO05D004565 4.5e-34 148.7 166 54.8
Potri.001G402500 Populus trichocarpa HOM05D003840 ORTHO05D004565 5.9e-34 148.3 154 56.5
Sed0025069 Sechium edule HOM05D003840 ORTHO05D004565 5.9e-34 148.3 153 57.5
Solyc07g063280.3 Solanum lycopersicum HOM05D003840 ORTHO05D004565 7.7e-34 147.9 112 68.8
Lalb_Chr01g0016961 Lupinus albus HOM05D003840 ORTHO05D004565 1.3e-33 147.1 178 51.1
Sabra16G0264000 Salix brachista HOM05D003840 ORTHO05D004565 1.3e-33 147.1 177 50.8
Cpa.g.sc80.41 Carica papaya HOM05D003840 ORTHO05D004565 1.7e-33 146.7 155 56.8
THA.LOC104818066 Tarenaya hassleriana HOM05D003840 ORTHO05D004565 1.7e-33 146.7 155 55.5
Eucgr.F03333 Eucalyptus grandis HOM05D003840 ORTHO05D004565 2.9e-33 146.0 146 58.2
PSO832G0205 Papaver somniferum HOM05D003840 ORTHO05D004565 2.9e-33 146.0 169 52.7
RcHm_v2.0_Chr7g0222551 Rosa chinensis HOM05D003840 ORTHO05D004565 2.9e-33 146.0 162 53.1
THA.LOC104810482 Tarenaya hassleriana HOM05D003840 ORTHO05D004565 3.8e-33 145.6 155 54.8
Atru.chr2.2716 Acer truncatum HOM05D003840 ORTHO05D004565 5.0e-33 145.2 154 55.2
ECA240G0083 Erigeron canadensis HOM05D003840 ORTHO05D004565 5.0e-33 145.2 164 53.7
Aqoxy4G01004 Aquilegia oxysepala HOM05D003840 ORTHO05D004565 6.5e-33 144.8 150 56.7
CANSAT56G3533 Cannabis sativa HOM05D003840 ORTHO05D004565 8.5e-33 144.4 160 51.9
SGA_v2.0_scaffold34G13732 Striga asiatica HOM05D003840 ORTHO05D004565 2.5e-32 142.9 141 57.4
TWI53G0481 Tripterygium wilfordii HOM05D003840 ORTHO05D004565 2.5e-32 142.9 152 55.3
VMungo1080G0416 Vigna mungo HOM05D003840 ORTHO05D004565 2.5e-32 142.9 154 53.9
Phvul.007G273700 Phaseolus vulgaris HOM05D003840 ORTHO05D004565 3.2e-32 142.5 153 54.2
Phvul.011G177700 Phaseolus vulgaris HOM05D003840 ORTHO05D004565 3.2e-32 142.5 153 54.2
Ca_01831_v3 Cicer arietinum L. HOM05D003840 ORTHO05D004565 5.5e-32 141.7 154 55.8
Lalb_Chr25g0286531 Lupinus albus HOM05D003840 ORTHO05D004565 5.5e-32 141.7 170 51.8
Hund22938 Selenicereus undatus HOM05D003840 ORTHO05D004565 5.5e-32 141.7 131 58.8
Os03g0352400 Oryza sativa ssp. japonica HOM05D003840 ORTHO05D004565 7.2e-32 141.4 130 59.2
PGSC0003DMG400012453 Solanum tuberosum HOM05D003840 ORTHO05D004565 7.2e-32 141.4 100 73.0
Ciclev10007878m.g Citrus clementina HOM05D003840 ORTHO05D004565 9.4e-32 141.0 154 53.2
SEGI_28100 Sequoiadendron giganteum HOM05D003840 ORTHO05D004565 9.4e-32 141.0 133 58.6
GSVIVG01014369001 Vitis vinifera HOM05D003840 ORTHO05D004565 9.4e-32 141.0 145 56.6
vmacro09541 Vaccinium macrocarpon HOM05D003840 ORTHO05D004565 1.6e-31 140.2 219 45.2
Cfa020553 Carpinus fangiana HOM05D003840 ORTHO05D004565 3.6e-31 139.0 162 51.2
QL08p020021 Quercus lobata HOM05D003840 ORTHO05D004565 4.7e-31 138.7 177 48.6
MD00G1089700 Malus domestica HOM05D003840 ORTHO05D004565 6.1e-31 138.3 178 48.3
Zm00001eb016990 Zea mays HOM05D003840 ORTHO05D004565 7.9e-31 137.9 149 53.0
ClCG09G018660 Citrullus lanatus HOM05D003840 ORTHO05D004565 1.0e-30 137.5 184 46.7
PGR031G3608 Punica granatum HOM05D003840 ORTHO05D004565 1.4e-30 137.1 153 54.2
TWI73G0301 Tripterygium wilfordii HOM05D003840 ORTHO05D004565 1.8e-30 136.7 152 52.0
CiPaw.08G146100 Carya illinoinensis HOM05D003840 ORTHO05D004565 3.0e-30 136.0 145 53.8
CiPaw.12G120400 Carya illinoinensis HOM05D003840 ORTHO05D004565 3.9e-30 135.6 145 53.8
Prupe.4G184700 Prunus persica HOM05D003840 ORTHO05D004565 3.9e-30 135.6 178 47.8
Thhalv10011345m.g Eutrema salsugineum HOM05D003840 ORTHO05D004565 6.7e-30 134.8 140 55.7
Sed0017316 Sechium edule HOM05D003840 ORTHO05D004565 4.4e-29 132.1 158 51.9
COL.COLO4_09425 Corchorus olitorius HOM05D003840 ORTHO05D004565 7.4e-29 131.3 140 54.3
Aa31LG10G2130 Aethionema arabicum HOM05D003840 ORTHO05D004565 9.7e-29 131.0 167 47.3
Carub.0001s4212 Capsella rubella HOM05D003840 ORTHO05D004565 9.7e-29 131.0 140 54.3
FvH4_5g29580 Fragaria vesca HOM05D003840 ORTHO05D004565 2.8e-28 129.4 162 49.4
FAN13G0946 Fragaria x ananassa HOM05D003840 ORTHO05D004565 2.8e-28 129.4 162 49.4
FAN18G3753 Fragaria x ananassa HOM05D003840 ORTHO05D004565 2.8e-28 129.4 162 49.4
PSO782G4342 Papaver somniferum HOM05D003840 ORTHO05D004565 2.8e-28 129.4 168 47.6
Psat6g240320 Pisum sativum HOM05D003840 ORTHO05D004565 4.8e-28 128.6 154 52.6
RcHm_v2.0_Chr4g0433481 Rosa chinensis HOM05D003840 ORTHO05D004565 4.8e-28 128.6 96 66.7
AL1G61320 Arabidopsis lyrata HOM05D003840 ORTHO05D004565 8.2e-28 127.9 165 46.7
AT1G52980 Arabidopsis thaliana HOM05D003840 ORTHO05D004565 8.2e-28 127.9 165 47.3
FAN04G1578 Fragaria x ananassa HOM05D003840 ORTHO05D004565 8.2e-28 127.9 162 48.8
Peaxi162Scf00052g02012 Petunia axillaris HOM05D003840 ORTHO05D004565 1.8e-27 126.7 104 66.3
PSO832G2656 Papaver somniferum HOM05D003840 ORTHO05D004565 2.4e-27 126.3 91 69.2
PGSC0003DMG400016932 Solanum tuberosum HOM05D003840 ORTHO05D004565 2.4e-27 126.3 81 74.1
Medtr2g079510 Medicago truncatula HOM05D003840 ORTHO05D004565 3.1e-27 125.9 176 46.0
SMO367G1211 Selaginella moellendorffii HOM05D003840 ORTHO05D004565 4.1e-27 125.6 131 54.2
BcaB02g10967 Brassica carinata HOM05D003840 ORTHO05D004565 5.3e-27 125.2 165 46.7
BcaB07g33370 Brassica carinata HOM05D003840 ORTHO05D004565 5.3e-27 125.2 165 46.7
A06p01380 Brassica napus HOM05D003840 ORTHO05D004565 7.0e-27 124.8 165 46.7
C06p14330 Brassica napus HOM05D003840 ORTHO05D004565 7.0e-27 124.8 165 46.7
BraA06t23360Z Brassica rapa HOM05D003840 ORTHO05D004565 7.0e-27 124.8 165 46.7
Sp1g39540 Schrenkiella parvula HOM05D003840 ORTHO05D004565 7.0e-27 124.8 165 46.7
BcaC08g44019 Brassica carinata HOM05D003840 ORTHO05D004565 1.6e-26 123.6 165 46.1
BolC6t36608H Brassica oleracea HOM05D003840 ORTHO05D004565 1.6e-26 123.6 165 46.1
SHI05032 Sapria himalayana HOM05D003840 ORTHO05D004565 1.6e-26 123.6 131 51.9
Medtr4g081850 Medicago truncatula HOM05D003840 ORTHO05D004565 2.6e-26 122.9 154 49.4
EL10Ac4g08140 Beta vulgaris HOM05D003840 ORTHO05D004565 4.5e-26 122.1 137 51.8
MELO3C033647.2 Cucumis melo HOM05D003840 ORTHO05D004565 4.5e-26 122.1 131 51.9
BcaC08g43481 Brassica carinata HOM05D003840 ORTHO05D004565 5.9e-26 121.7 165 46.1
C06p08670 Brassica napus HOM05D003840 ORTHO05D004565 5.9e-26 121.7 165 46.1
Manes.03G112800 Manihot esculenta HOM05D003840 ORTHO05D004565 7.7e-26 121.3 93 63.4
PSO210G3517 Papaver somniferum HOM05D003840 ORTHO05D004565 1.7e-25 120.2 88 68.2
TPR.G28203 Trifolium pratense HOM05D003840 ORTHO05D004565 1.7e-25 120.2 154 50.0
Lj3g0017419 Lotus japonicus HOM05D003840 ORTHO05D004565 5.0e-25 118.6 162 44.4
Pp3c1_3230 Physcomitrium patens HOM05D003840 ORTHO05D004565 6.5e-25 118.2 135 50.4
TPR.G39016 Trifolium pratense HOM05D003840 ORTHO05D004565 8.5e-25 117.9 146 50.0
PGSC0003DMG400015436 Solanum tuberosum HOM05D003840 ORTHO05D004565 3.2e-24 115.9 81 70.4
CARHR043180 Cardamine hirsuta HOM05D003840 ORTHO05D004565 4.2e-24 115.5 164 45.1
Cre07.g340050 Chlamydomonas reinhardtii HOM05D003840 ORTHO05D004565 7.2e-24 114.8 146 47.3
Ah.03g144680 Amaranthus hybridus HOM05D003840 ORTHO05D004565 9.4e-24 114.4 155 45.8
Mapoly0122s0018 Marchantia polymorpha HOM05D003840 ORTHO05D004565 4.7e-23 112.1 135 50.4
MD10G1052400 Malus domestica HOM05D003840 ORTHO05D004565 6.1e-23 111.7 147 46.9
CARHR224670 Cardamine hirsuta HOM05D003840 ORTHO05D004565 8.0e-23 111.3 125 48.8
PGSC0003DMG400028011 Solanum tuberosum HOM05D003840 ORTHO05D004565 1.8e-22 110.2 81 67.9
AUR62034278 Chenopodium quinoa HOM05D003840 ORTHO05D004565 4.0e-22 109.0 131 50.4
FAN14G4652 Fragaria x ananassa HOM05D003840 ORTHO05D004565 4.0e-22 109.0 98 57.1
FAN08G1280 Fragaria x ananassa HOM05D003840 ORTHO05D004565 5.2e-22 108.6 96 57.3
FvH4_6g33850 Fragaria vesca HOM05D003840 ORTHO05D004565 1.2e-21 107.5 97 56.7
PRCOL_00004437 Prasinoderma coloniale HOM05D003840 ORTHO05D004565 1.2e-21 107.5 134 47.8
TPR.G38959 Trifolium pratense HOM05D003840 ORTHO05D004565 3.3e-21 105.9 86 61.6
MCO07G526 Micromonas commoda HOM05D003840 ORTHO05D004565 4.4e-21 105.5 91 59.3
AagrBONN_evm.TU.Sc2ySwM_117.381 Anthoceros agrestis HOM05D003840 ORTHO05D004565 9.7e-21 104.4 134 46.3
AagrBONN_evm.TU.Sc2ySwM_344.5148 Anthoceros agrestis HOM05D003840 ORTHO05D004565 9.7e-21 104.4 134 46.3
Ca_01830_v3 Cicer arietinum L. HOM05D003840 ORTHO05D004565 1.1e-19 100.9 157 45.9
MD03G1224500 Malus domestica HOM05D003840 ORTHO05D004565 1.1e-19 100.9 127 47.2
Phvul.005G082701 Phaseolus vulgaris HOM05D003840 ORTHO05D004565 7.7e-18 94.7 112 50.9
HPP92_018299 Vanilla planifolia HOM05D003840 ORTHO05D004565 2.3e-14 83.2 125 43.2
Cfa026970 Carpinus fangiana HOM05D003840 ORTHO05D004565 1.7e-09 67.0 162 32.7
Medtr5g010400 Medicago truncatula HOM05D003840 ORTHO05D004565 1.7e-09 67.0 50 66.0
Haze_27102 Corylus avellana HOM05D003840 ORTHO05D004565 3.8e-09 65.9 163 32.5
CBR_g28541 Chara braunii HOM05D003840 ORTHO05D004565 1.1e-08 64.3 56 53.6
CAN.G162.71 Capsicum annuum HOM05D003840 ORTHO05D004565 9.5e-08 61.2 36 75.0
FAN05G0276 Fragaria x ananassa HOM05D003840 ORTHO05D004565 1.2e-07 60.8 98 42.9
VMungo0540G2174 Vigna mungo HOM05D003840 ORTHO05D004565 2.1e-07 60.1 49 61.2


User provided reference genes

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