Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.1e-146 522.3 264 100.0
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 2.7e-117 425.6 277 81.2
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 2.7e-117 425.6 277 79.8
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 1.2e-112 410.2 278 74.8
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 2.7e-109 399.1 276 71.7
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 1.0e-108 397.1 277 76.2
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 1.8e-108 396.4 264 73.5
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 5.1e-108 394.8 275 76.4
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 2.6e-107 392.5 259 75.7
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 4.4e-107 391.7 259 73.7
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 1.7e-106 389.8 266 71.1
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 2.8e-106 389.0 276 69.6
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 6.3e-106 387.9 264 75.0
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 8.2e-106 387.5 265 74.3
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 8.2e-106 387.5 259 73.7
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 1.1e-105 387.1 277 72.2
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 1.4e-105 386.7 258 76.4
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 2.4e-105 386.0 265 75.8
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 3.1e-105 385.6 244 74.6
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 5.3e-105 384.8 263 76.8
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 9.1e-105 384.0 261 72.8
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.2e-104 383.6 212 88.7
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 1.6e-104 383.3 256 76.2
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 2.0e-104 382.9 274 69.7
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 2.0e-104 382.9 245 75.9
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 2.6e-104 382.5 262 72.9
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 3.5e-104 382.1 258 74.0
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 5.9e-104 381.3 264 70.8
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 5.9e-104 381.3 254 72.4
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 7.7e-104 380.9 261 72.8
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 7.7e-104 380.9 247 72.9
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 1.7e-103 379.8 264 76.5
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 2.9e-103 379.0 265 71.3
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 2.9e-103 379.0 265 71.3
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 3.8e-103 378.6 261 71.3
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 3.8e-103 378.6 263 74.9
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 5.0e-103 378.3 263 73.4
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 5.0e-103 378.3 258 74.4
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 8.5e-103 377.5 249 72.3
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 1.1e-102 377.1 250 72.0
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 1.5e-102 376.7 243 72.0
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 1.9e-102 376.3 259 69.5
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 1.9e-102 376.3 261 77.0
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 2.5e-102 375.9 264 74.6
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 3.2e-102 375.6 268 73.5
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 4.2e-102 375.2 258 74.0
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 4.2e-102 375.2 259 71.4
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 5.5e-102 374.8 267 75.3
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 7.2e-102 374.4 271 71.6
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 7.2e-102 374.4 264 75.0
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 7.2e-102 374.4 254 76.4
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 9.4e-102 374.0 260 73.8
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 1.2e-101 373.6 259 70.7
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 1.6e-101 373.2 259 73.4
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 2.1e-101 372.9 287 66.2
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 2.1e-101 372.9 274 67.2
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 3.6e-101 372.1 249 71.5
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 3.6e-101 372.1 248 72.2
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 4.7e-101 371.7 255 70.2
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 6.1e-101 371.3 250 76.0
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 1.0e-100 370.5 260 68.8
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 1.4e-100 370.2 250 71.6
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 1.4e-100 370.2 260 73.5
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 1.4e-100 370.2 257 75.1
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 2.3e-100 369.4 261 73.6
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 2.3e-100 369.4 261 73.6
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 2.3e-100 369.4 261 73.6
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 2.3e-100 369.4 261 73.2
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 2.3e-100 369.4 259 72.2
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 2.3e-100 369.4 259 72.2
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 3.0e-100 369.0 259 73.0
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 3.0e-100 369.0 261 70.9
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 8.8e-100 367.5 246 76.0
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.1e-99 367.1 256 73.0
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.5e-99 366.7 257 72.0
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 2.0e-99 366.3 261 72.8
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 2.0e-99 366.3 250 75.2
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 2.0e-99 366.3 273 66.7
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.6e-99 365.9 257 72.0
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 2.6e-99 365.9 220 79.5
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 3.3e-99 365.5 275 70.9
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 3.3e-99 365.5 257 67.7
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 1.3e-98 363.6 278 67.3
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 2.2e-98 362.8 246 74.0
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 4.8e-98 361.7 259 73.7
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 6.3e-98 361.3 250 69.2
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 6.3e-98 361.3 260 70.0
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 1.1e-97 360.5 279 71.3
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 1.8e-97 359.8 245 71.0
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 5.3e-97 358.2 259 68.3
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 7.0e-97 357.8 268 69.8
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 5.9e-96 354.8 217 77.0
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 1.3e-95 353.6 248 74.2
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 1.3e-95 353.6 248 74.2
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 8.5e-95 350.9 238 76.5
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 1.6e-93 346.7 220 77.3
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 1.6e-93 346.7 237 73.4
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 3.6e-93 345.5 245 67.3
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 1.8e-92 343.2 250 68.4
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 4.0e-92 342.0 244 66.4
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 5.2e-92 341.7 241 76.3
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 1.2e-91 340.5 270 64.8
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 4.4e-91 338.6 242 69.8
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 5.7e-91 338.2 253 69.6
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 6.3e-90 334.7 241 75.1
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 9.1e-89 330.9 255 65.1
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 2.0e-88 329.7 229 71.2
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 3.5e-88 328.9 240 74.6
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 4.2e-86 322.0 222 70.7
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 4.2e-86 322.0 214 76.2
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 9.4e-86 320.9 229 68.1
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 2.7e-85 319.3 235 62.6
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 1.4e-84 317.0 229 70.7
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 1.2e-83 313.9 229 68.1
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 1.7e-82 310.1 247 63.6
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 2.8e-82 309.3 231 65.4
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 8.3e-82 307.8 242 65.7
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 3.5e-80 302.4 221 72.9
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 3.5e-80 302.4 266 58.6
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 4.5e-80 302.0 276 56.9
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 1.9e-78 296.6 283 53.0
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 8.9e-68 261.2 230 57.8
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 1.5e-67 260.4 244 55.7
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.7e-66 256.9 161 75.8
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 9.2e-65 251.1 230 55.2
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 1.2e-64 250.8 166 72.9
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 1.6e-61 240.4 168 63.1
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.2e-56 224.2 185 63.8
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 3.5e-56 222.6 207 61.4
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 1.7e-55 220.3 229 54.1
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 3.4e-51 206.1 222 48.6
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 9.9e-51 204.5 140 70.7
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 2.1e-48 196.8 163 61.3
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 2.1e-48 196.8 163 61.3
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 7.8e-48 194.9 137 67.9
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 3.9e-47 192.6 227 49.3
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 6.6e-47 191.8 150 62.7
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 8.1e-45 184.9 153 60.8
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 1.1e-44 184.5 149 67.1
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 1.8e-44 183.7 136 68.4
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 6.8e-44 181.8 248 46.8
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 3.4e-43 179.5 174 56.9
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 3.8e-42 176.0 111 79.3
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 9.3e-41 171.4 184 50.0
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 3.6e-37 159.5 108 75.0
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 4.8e-37 159.1 150 49.3
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 8.1e-37 158.3 159 48.4
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 1.8e-36 157.1 139 59.0
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 2.4e-36 156.8 202 39.6
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 5.4e-33 145.6 156 48.7
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 2.7e-32 143.3 106 59.4
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 9.6e-30 134.8 166 46.4
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 9.6e-30 134.8 166 46.4
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 2.1e-29 133.7 166 46.4
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 1.5e-27 127.5 212 36.3
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 2.1e-24 117.1 82 74.4
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 3.0e-23 113.2 141 49.6
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 5.6e-22 109.0 82 63.4
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 8.1e-21 105.1 62 66.1
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.4e-20 104.4 93 52.7
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 2.4e-20 103.6 102 49.0
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 3.1e-20 103.2 61 65.6
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 4.0e-20 102.8 94 47.9
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 2.0e-19 100.5 65 60.0
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 3.4e-19 99.8 93 50.5
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 3.4e-19 99.8 93 50.5
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 3.4e-19 99.8 62 62.9
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 4.9e-18 95.9 123 44.7
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 8.4e-18 95.1 98 48.0
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 8.4e-18 95.1 98 48.0
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 8.4e-18 95.1 60 61.7
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 3.0e-15 86.7 62 54.8
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 3.0e-15 86.7 62 54.8
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 1.9e-14 84.0 66 68.2
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.6e-13 80.9 75 50.7
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 3.7e-13 79.7 209 40.2
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 6.9e-12 75.5 110 33.6
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 1.5e-11 74.3 82 48.8
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.1e-09 68.2 117 43.6
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 1.1e-06 58.2 51 58.8
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 7.4e-06 55.5 71 46.5
A02p43170 Brassica napus HOM05D003601 ORTHO05D013806 9.7e-06 55.1 89 39.3


User provided reference genes

Program Settings